From 3bc0b532b753ab56a2b2141481f2e0d4c6046113 Mon Sep 17 00:00:00 2001 From: Bryan Roessler Date: Mon, 16 Sep 2024 21:18:59 -0400 Subject: [PATCH] Fix plot config references --- qhtcp-workflow/apps/r/calculate_interaction_zscores.R | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/qhtcp-workflow/apps/r/calculate_interaction_zscores.R b/qhtcp-workflow/apps/r/calculate_interaction_zscores.R index 90491b19..1fa651ff 100644 --- a/qhtcp-workflow/apps/r/calculate_interaction_zscores.R +++ b/qhtcp-workflow/apps/r/calculate_interaction_zscores.R @@ -14,7 +14,7 @@ options(warn = 2) # Set the memory limit to 30GB (30 * 1024 * 1024 * 1024 bytes) soft_limit <- 30 * 1024 * 1024 * 1024 hard_limit <- 30 * 1024 * 1024 * 1024 -rlimit_as(soft_limit, hard_limit) +invisible(rlimit_as(soft_limit, hard_limit)) # Constants for configuration plot_width <- 14 @@ -1339,8 +1339,8 @@ main <- function() { message("Generating rank plots") zscores_interactions_joined_filtered <- filter_data( - zscores_interactions_joined, - variables, + df = zscores_interactions_joined, + variables = interaction_vars, missing = TRUE, adjust = TRUE, rank = TRUE)