diff --git a/workflow/qhtcp-workflow b/workflow/qhtcp-workflow index 70f504a3..959aa309 100755 --- a/workflow/qhtcp-workflow +++ b/workflow/qhtcp-workflow @@ -532,7 +532,7 @@ interactive_header() { else for ((c=1; c<2; c++)); do # safe loop that only runs once echo "Enter a comma-separated list of project numbers to analyze" - ((YES)) || read -r -p "Or enter 0 to add a new project or hit Enter for default project($num): " response + ((YES)) || read -r -p "Or enter 0 to add a new project or hit Enter for default project ($num): " response if [[ $response == 0 ]]; then ask_pn && PROJECTS+=("${ADD_PROJECTS[@]}") else @@ -638,9 +638,9 @@ install_dependencies() { debug "Running: ${FUNCNAME[0]} $*" # Dependency arrays - depends_rpm=(graphviz pandoc pdftk-java gd-devel perl-CPAN shdoc nano rsync coreutils libcurl-devel openssl-devel) - depends_deb=(graphviz pandoc pdftk-java libgd-dev perl shdoc nano rsync coreutils libcurl-dev openssl-dev) - depends_brew=(graphiz pandoc gd pdftk-java shdoc nano perl rsync coreutils) + depends_rpm=(graphviz pandoc pdftk-java gd-devel perl-CPAN shdoc nano rsync coreutils libcurl-devel openssl-devel harffbuzz-devel fribidi-devel) + depends_deb=(graphviz pandoc pdftk-java libgd-dev perl shdoc nano rsync coreutils libcurl-dev openssl-dev libharfbuzz-dev libfribidi-dev) + depends_brew=(graphiz pandoc gd pdftk-java shdoc nano perl rsync coreutils harfbuzz fribidi) depends_perl=(Test::Warnings Test::Fatal File::Map Sub::Uplevel ExtUtils::Config ExtUtils::PkgConfig IPC::Run Module::Build::Tiny IPC::Run GD GO::TermFinder) depends_r=(BiocManager ontologyIndex ggrepel tidyverse sos openxlsx ggplot2 plyr extrafont gridExtra gplots stringr plotly ggthemes pandoc rmarkdown