From 5dc6021582378624662716b2f6e148c3a17f242c Mon Sep 17 00:00:00 2001
From: Bryan Roessler <bryanroessler@gmail.com>
Date: Sat, 27 Jul 2024 01:26:58 -0400
Subject: [PATCH] DMPexcel2mat.m refactor

---
 workflow/templates/easy/DMPexcel2mat.m | 13 ++++++-------
 1 file changed, 6 insertions(+), 7 deletions(-)

diff --git a/workflow/templates/easy/DMPexcel2mat.m b/workflow/templates/easy/DMPexcel2mat.m
index 9502ce4d..7da63863 100755
--- a/workflow/templates/easy/DMPexcel2mat.m
+++ b/workflow/templates/easy/DMPexcel2mat.m
@@ -90,8 +90,8 @@ end
 % The input files should be csv, not xlsx
 % This whole file could be much better and more portable
 if ispc
-  [num, txt, raw] = xlsread(masterPlateFile);  %,'Yor1HitsMPsetFinal');
-  fields= {txt(2,1:15)}; %or 1:17 for later but dont wish to exceed and cause error ? if used  
+  [num, txt, raw]=xlsread(masterPlateFile);  %,'Yor1HitsMPsetFinal');
+  fields={txt(2,1:15)}; %or 1:17 for later but dont wish to exceed and cause error ? if used  
 else
   clear MPtbl
   opts=detectImportOptions(masterPlateFile);
@@ -186,7 +186,7 @@ if ~exist(drugMediaFile, 'file') || isempty(drugMediaFile)
         disp(strcat('Using matching DrugMedia file: ', drugMediaFile, ', skipping directory selection'));
       else
         % Try to find the DrugMedia file automatically (newest created first)
-        files=dir(matDir)
+        files=dir(matDir);
         dmFiles={files(strncmp(files.name, 'DrugMedia_', 10)).name};
         if isempty(dmFiles)
           throw (MException('MATLAB:dir', 'No DrugMedia_ files in directory'));
@@ -210,7 +210,7 @@ if ~exist(drugMediaFile, 'file') || isempty(drugMediaFile)
         questdlg('Select DrugMedia directory','Directory Selection','OK',...
         struct('Default','OK','Interpreter','tex'))
         dirToScan=uigetdir();
-        files=dir(dirToScan)
+        files=dir(dirToScan);
         dmFiles={files(strncmp(files.name, 'DrugMedia_', 10)).name};
         if isempty(dmFiles)
           throw (MException('MATLAB:dir', 'No DrugMedia_ files in directory'));
@@ -220,11 +220,10 @@ if ~exist(drugMediaFile, 'file') || isempty(drugMediaFile)
         sortedFiles=dmFiles{sortedIndices};
         drugMediaFile=sortedFiles{1};
       catch ME
-        h = msgbox(ME.message, 'Error', 'error');
+        h=msgbox(ME.message, 'Error', 'error');
         uiwait(h);
-        disp('Rerunning directory selection')
+        disp('Rerunning directory selection');
         % I don't know what else we'll need to do here
-        end
       end
     end
   end