From 68dea8ecb427e83410fc23277b5a216319fc1ce2 Mon Sep 17 00:00:00 2001
From: Bryan Roessler <bryanroessler@gmail.com>
Date: Sun, 4 Aug 2024 22:19:36 -0400
Subject: [PATCH] Improve Study Info formatting

---
 workflow/qhtcp-workflow | 22 +++++++++++++++-------
 1 file changed, 15 insertions(+), 7 deletions(-)

diff --git a/workflow/qhtcp-workflow b/workflow/qhtcp-workflow
index 99a9c61d..6bc80f0d 100755
--- a/workflow/qhtcp-workflow
+++ b/workflow/qhtcp-workflow
@@ -1973,7 +1973,7 @@ get_studies() {
 
   next_study_entry="$empty_study,$PROJECT_SUFFIX,NA,NA,$INITIALS"
 
-  echo "${underline}Study Info${nounderline}"
+  echo "${underline}Study Info File${nounderline}"
 
   if [[ ! -f $1 ]]; then
     echo "Creating default $1"
@@ -1984,12 +1984,12 @@ get_studies() {
 
   # Print current studies
   cat <<-EOF 
-		Give each experiment labels to be used for the plots and specific files. 
-		Enter the desired Experiment names and order them in the way you want them to appear in the REMc heatmaps
+		* Give each experiment labels to be used for the plots and specific files. 
+		* Enter the desired Experiment names and order them in the way you want them to appear in the REMc heatmaps
 
 		Current study info file:
 
-    ${underline}$1${nounderline}
+		${underline}$1${nounderline}
 		$(cat "$1")
 	
 	EOF
@@ -1997,9 +1997,17 @@ get_studies() {
   # Allow user to add/edit the study info file
   if ! ((YES)); then
     for ((i=1; i<2; i++)); do
-      echo "Auto-entry suggestion: $next_study_entry"
-      echo "Would you like to (a)dd the auto-entry, (e)dit the StudyInfo.csv file in nano, or (c)ontinue?"
-      read -r -p "Hit [Enter] or c to continue: " response
+      cat <<-EOF
+				"Next entry suggestion: $next_study_entry"
+
+				"Would you like to: 
+				* (a)dd the suggested entry
+				* (e)dit the StudyInfo.csv file manually in nano
+				* (c)ontinue?"
+
+			EOF
+      read -r -p "(c): " response
+      echo ""
       [[ -z $response ]] && break
       case $response in
         a)