diff --git a/workflow/qhtcp-workflow b/workflow/qhtcp-workflow index cdd0aa18..89441ffe 100755 --- a/workflow/qhtcp-workflow +++ b/workflow/qhtcp-workflow @@ -423,9 +423,9 @@ install_dependencies() { debug "Running: ${FUNCNAME[0]}" "$@" # Dependency arrays - depends_rpm=(graphviz pandoc pdftk-java gd-devel shdoc nano rsync coreutils) - depends_deb=(graphviz pandoc pdftk-java libgd-dev shdoc nano rsync coreutils) - depends_brew=(graphiz pandoc gd pdftk-java shdoc nano rsync coreutils) + depends_rpm=(graphviz pandoc pdftk-java gd-devel perl-CPAN shdoc nano rsync coreutils) + depends_deb=(graphviz pandoc pdftk-java libgd-dev perl shdoc nano rsync coreutils) + depends_brew=(graphiz pandoc gd pdftk-java shdoc nano perl rsync coreutils) depends_perl=(File::Map ExtUtils::PkgConfig GD GO::TermFinder) depends_r=(BiocManager ontologyIndex ggrepel tidyverse sos openxlsx ggplot2 plyr extrafont gridExtra gplots stringr plotly ggthemes pandoc rmarkdown