diff --git a/qhtcp-workflow/apps/r/calculate_interaction_zscores.R b/qhtcp-workflow/apps/r/calculate_interaction_zscores.R index bdaf0d03..9f2aa982 100644 --- a/qhtcp-workflow/apps/r/calculate_interaction_zscores.R +++ b/qhtcp-workflow/apps/r/calculate_interaction_zscores.R @@ -394,10 +394,10 @@ generate_and_save_plots <- function(output_dir, file_name, plot_configs, grid_la plot_base <- ggplot(df, aes_mapping) # Function to generate the plot - generate_plot <- function(is_interactive) { + generate_plot <- function(interactive) { # Use appropriate helper function based on plot type plot <- switch(config$plot_type, - "scatter" = generate_scatter_plot(plot_base, config, is_interactive = is_interactive), + "scatter" = generate_scatter_plot(plot_base, config, is_interactive = interactive), "box" = generate_box_plot(plot_base, config), "density" = plot_base + geom_density(), "bar" = plot_base + geom_bar(), @@ -479,7 +479,7 @@ generate_scatter_plot <- function(plot, config, is_interactive = FALSE) { ) } - # Add the interactive `text` aesthetic if `is_interactive` is TRUE + # Add the interactive text aesthetic if `is_interactive` is TRUE if (is_interactive) { if (!is.null(config$delta_bg_point) && config$delta_bg_point) { plot <- plot + geom_point( @@ -561,7 +561,7 @@ generate_scatter_plot <- function(plot, config, is_interactive = FALSE) { plot <- plot + scale_y_continuous(limits = config$ylim_vals) } - # Add annotations if provided + # Add annotations if specified if (!is.null(config$annotations)) { for (annotation in config$annotations) { plot <- plot + annotate("text", x = annotation$x, y = annotation$y, label = annotation$label)