From 815c7615e7ff22ee617249fa5b12b60b7e0ac3cf Mon Sep 17 00:00:00 2001 From: Bryan Roessler Date: Fri, 2 Aug 2024 19:08:45 -0400 Subject: [PATCH] Restructure R library loading --- workflow/qhtcp-workflow | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflow/qhtcp-workflow b/workflow/qhtcp-workflow index 58fe0b42..664a07b9 100755 --- a/workflow/qhtcp-workflow +++ b/workflow/qhtcp-workflow @@ -482,7 +482,7 @@ install_dependencies() { # Install R packages for d in "${depends_r[@]}"; do debug "$RSCRIPT -e \"if (!require(\"$d\", quietly = TRUE)); install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")\"" - "$RSCRIPT" -e "if (!require(\"$d\", quietly = TRUE)); install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")" + "$RSCRIPT" -e "if (!require(\"$d\", quietly = TRUE)); {install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")}" done # Install Bioc packages