diff --git a/qhtcp-workflow/apps/r/calculate_interaction_zscores.R b/qhtcp-workflow/apps/r/calculate_interaction_zscores.R index 85d3e84d..fcb4f48c 100644 --- a/qhtcp-workflow/apps/r/calculate_interaction_zscores.R +++ b/qhtcp-workflow/apps/r/calculate_interaction_zscores.R @@ -293,10 +293,10 @@ calculate_interaction_scores <- function(df, max_conc, variables, group_vars = c lm_Score_K = sapply(lm_K, function(model) coef(model)[2] * max_conc + coef(model)[1]), lm_Score_r = sapply(lm_r, function(model) coef(model)[2] * max_conc + coef(model)[1]), lm_Score_AUC = sapply(lm_AUC, function(model) coef(model)[2] * max_conc + coef(model)[1]), - r_squared_L = sapply(lm_L, function(model) summary(model)$r.squared), - r_squared_K = sapply(lm_K, function(model) summary(model)$r.squared), - r_squared_r = sapply(lm_r, function(model) summary(model)$r.squared), - r_squared_AUC = sapply(lm_AUC, function(model) summary(model)$r.squared), + R_Squared_L = sapply(lm_L, function(model) summary(model)$r.squared), + R_Squared_K = sapply(lm_K, function(model) summary(model)$r.squared), + R_Squared_r = sapply(lm_r, function(model) summary(model)$r.squared), + R_Squared_AUC = sapply(lm_AUC, function(model) summary(model)$r.squared), Sum_Zscore_L = sum(Zscore_L, na.rm = TRUE), Sum_Zscore_K = sum(Zscore_K, na.rm = TRUE), Sum_Zscore_r = sum(Zscore_r, na.rm = TRUE), @@ -324,19 +324,22 @@ calculate_interaction_scores <- function(df, max_conc, variables, group_vars = c "se_L", "se_K", "se_r", "se_AUC", "Raw_Shift_L", "Raw_Shift_K", "Raw_Shift_r", "Raw_Shift_AUC", "Z_Shift_L", "Z_Shift_K", "Z_Shift_r", "Z_Shift_AUC", - "WT_L", "WT_K", "WT_r", "WT_AUC", "WT_sd_L", "WT_sd_K", "WT_sd_r", "WT_sd_AUC", - "Exp_L", "Exp_K", "Exp_r", "Exp_AUC", "Delta_L", "Delta_K", "Delta_r", "Delta_AUC", + "WT_L", "WT_K", "WT_r", "WT_AUC", + "WT_sd_L", "WT_sd_K", "WT_sd_r", "WT_sd_AUC", + "Exp_L", "Exp_K", "Exp_r", "Exp_AUC", + "Delta_L", "Delta_K", "Delta_r", "Delta_AUC", "Zscore_L", "Zscore_K", "Zscore_r", "Zscore_AUC", "NG", "SM", "DB") %>% ungroup() # Also arrange results by Z_lm_L and NG interactions <- stats %>% - select("OrfRep", "Gene", "num", "Raw_Shift_L", "Raw_Shift_K", "Raw_Shift_AUC", "Raw_Shift_r", + select("OrfRep", "Gene", "num", + "Raw_Shift_L", "Raw_Shift_K", "Raw_Shift_AUC", "Raw_Shift_r", "Z_Shift_L", "Z_Shift_K", "Z_Shift_r", "Z_Shift_AUC", "lm_Score_L", "lm_Score_K", "lm_Score_AUC", "lm_Score_r", "R_Squared_L", "R_Squared_K", "R_Squared_r", "R_Squared_AUC", - "Sum_Z_Score_L", "Sum_Z_Score_K", "Sum_Z_Score_r", "Sum_Z_Score_AUC", + "Sum_Zscore_L", "Sum_Zscore_K", "Sum_Zscore_r", "Sum_Zscore_AUC", "Avg_Zscore_L", "Avg_Zscore_K", "Avg_Zscore_r", "Avg_Zscore_AUC", "Z_lm_L", "Z_lm_K", "Z_lm_r", "Z_lm_AUC", "NG", "SM", "DB") %>%