diff --git a/.gitignore b/.gitignore index 0ea15735..ead19031 100644 --- a/.gitignore +++ b/.gitignore @@ -4,3 +4,4 @@ mwe centos-upgrade-plan.txt workflow/out/ workflow/scans/ +last.dump.rda diff --git a/workflow/apps/java/clustering/bin/ExecMain.class b/workflow/apps/java/clustering/bin/ExecMain.class new file mode 100644 index 00000000..56c278d9 Binary files /dev/null and b/workflow/apps/java/clustering/bin/ExecMain.class differ diff --git a/workflow/apps/java/clustering/bin/GetClusters.class b/workflow/apps/java/clustering/bin/GetClusters.class new file mode 100644 index 00000000..130fefe9 Binary files /dev/null and b/workflow/apps/java/clustering/bin/GetClusters.class differ diff --git a/workflow/apps/java/clustering/bin/Information.class b/workflow/apps/java/clustering/bin/Information.class new file mode 100644 index 00000000..aa191289 Binary files /dev/null and b/workflow/apps/java/clustering/bin/Information.class differ diff --git a/workflow/apps/java/clustering/bin/META-INF/MANIFEST.MF b/workflow/apps/java/clustering/bin/META-INF/MANIFEST.MF new file mode 100644 index 00000000..e618d8c4 --- /dev/null +++ b/workflow/apps/java/clustering/bin/META-INF/MANIFEST.MF @@ -0,0 +1,5 @@ +Manifest-Version: 1.0 +Ant-Version: Apache Ant 1.10.1 +Created-By: 17.0.1+12-LTS (Azul Systems, Inc.) +Main-Class: weka.gui.GUIChooser + diff --git a/workflow/apps/java/clustering/bin/Matrix.class b/workflow/apps/java/clustering/bin/Matrix.class new file mode 100644 index 00000000..3edc66c6 Binary files /dev/null and b/workflow/apps/java/clustering/bin/Matrix.class differ diff --git a/workflow/apps/java/clustering/bin/RawGoID.class b/workflow/apps/java/clustering/bin/RawGoID.class new file mode 100644 index 00000000..b73942e4 Binary files /dev/null and b/workflow/apps/java/clustering/bin/RawGoID.class differ diff --git a/workflow/apps/java/clustering/bin/SGD2AttrTable.class b/workflow/apps/java/clustering/bin/SGD2AttrTable.class new file mode 100644 index 00000000..e865fb89 Binary files /dev/null and b/workflow/apps/java/clustering/bin/SGD2AttrTable.class differ diff --git a/workflow/apps/java/clustering/bin/Stats.class b/workflow/apps/java/clustering/bin/Stats.class new file mode 100644 index 00000000..9af1379c Binary files /dev/null and b/workflow/apps/java/clustering/bin/Stats.class differ diff --git a/workflow/apps/java/clustering/bin/TreeNode.class b/workflow/apps/java/clustering/bin/TreeNode.class new file mode 100644 index 00000000..60fcea0f Binary files /dev/null and b/workflow/apps/java/clustering/bin/TreeNode.class differ diff --git a/workflow/apps/java/clustering/bin/arpack_combined.jar b/workflow/apps/java/clustering/bin/arpack_combined.jar new file mode 100644 index 00000000..7444ccc2 Binary files /dev/null and b/workflow/apps/java/clustering/bin/arpack_combined.jar differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatClientProperties.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatClientProperties.class new file mode 100644 index 00000000..1d953696 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatClientProperties.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDarculaLaf.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDarculaLaf.class new file mode 100644 index 00000000..46b4c437 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDarculaLaf.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDarculaLaf.properties b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDarculaLaf.properties new file mode 100644 index 00000000..b2b669aa --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDarculaLaf.properties @@ -0,0 +1,69 @@ +# +# Copyright 2019 FormDev Software GmbH +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# + +# +# This file is loaded for "FlatLaf Darcula" theme (that extend class FlatDarculaLaf) +# and for all dark IntelliJ Platform themes. +# +# Documentation: +# - https://www.formdev.com/flatlaf/properties-files/ +# - https://www.formdev.com/flatlaf/how-to-customize/ +# +# NOTE: Avoid copying the whole content of this file to own properties files. +# This will make upgrading to newer FlatLaf versions complex and error-prone. +# Instead copy and modify only those properties that you need to alter. +# + +# Colors and style mostly based on Darcula theme from IntelliJ IDEA Community Edition, +# which is licensed under the Apache 2.0 license. Copyright 2000-2019 JetBrains s.r.o. +# See: https://github.com/JetBrains/intellij-community/ + +#---- variables ---- + +# accent colors (blueish) +@accentFocusColor = if(@accentColor, darken(@accentColor,20%), shade(spin(@accentBaseColor,-8),20%)) + + +#---- Button ---- + +Button.innerFocusWidth = 0 + +Button.default.boldText = true + + +#---- CheckBox ---- + +CheckBox.icon.focusWidth = null +CheckBox.icon.focusedBackground = null + + +#---- Component ---- + +Component.focusWidth = 2 +Component.innerFocusWidth = 0 +Component.innerOutlineWidth = 0 +Component.arrowType = triangle + + +#---- ProgressBar ---- + +ProgressBar.foreground = darken(@foreground,10%) +ProgressBar.selectionForeground = @background + + +#---- RadioButton ---- + +RadioButton.icon.centerDiameter = 5 diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDarkLaf.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDarkLaf.class new file mode 100644 index 00000000..737626d2 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDarkLaf.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDarkLaf.properties b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDarkLaf.properties new file mode 100644 index 00000000..f32253ea --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDarkLaf.properties @@ -0,0 +1,372 @@ +# +# Copyright 2019 FormDev Software GmbH +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# + +# +# This file is loaded for all dark themes (that extend class FlatDarkLaf). +# +# Documentation: +# - https://www.formdev.com/flatlaf/properties-files/ +# - https://www.formdev.com/flatlaf/how-to-customize/ +# +# NOTE: Avoid copying the whole content of this file to own properties files. +# This will make upgrading to newer FlatLaf versions complex and error-prone. +# Instead copy and modify only those properties that you need to alter. +# + +# Colors and style mostly based on Darcula theme from IntelliJ IDEA Community Edition, +# which is licensed under the Apache 2.0 license. Copyright 2000-2019 JetBrains s.r.o. +# See: https://github.com/JetBrains/intellij-community/ + +#---- variables ---- + +# general background and foreground (text color) +@background = #3c3f41 +@foreground = #bbb +@disabledBackground = @background +@disabledForeground = shade(@foreground,25%) + +# component background +@buttonBackground = tint(@background,9%) +@componentBackground = tint(@background,5%) +@menuBackground = darken(@background,5%) + +# selection +@selectionBackground = @accentSelectionBackground +@selectionForeground = contrast(@selectionBackground, @background, @foreground, 25%) +@selectionInactiveBackground = spin(saturate(shade(@selectionBackground,70%),20%),-15) +@selectionInactiveForeground = @foreground + +# menu +@menuHoverBackground = lighten(@menuBackground,10%,derived) +@menuCheckBackground = darken(@selectionBackground,10%,derived noAutoInverse) +@menuAcceleratorForeground = darken(@foreground,15%) +@menuAcceleratorSelectionForeground = @selectionForeground + +# misc +@cellFocusColor = #000 +@icon = shade(@foreground,7%) + +# accent colors (blueish) +# set @accentColor to use single accent color or +# modify @accentBaseColor to use variations of accent base color +@accentColor = null +@accentBaseColor = #4B6EAF +@accentBase2Color = lighten(saturate(spin(@accentBaseColor,-8),13%),5%) +# accent color variations +@accentFocusColor = if(@accentColor, @accentColor, shade(spin(@accentBaseColor,-8),20%)) +@accentLinkColor = if(@accentColor, @accentColor, lighten(saturate(spin(@accentBaseColor,-5),50%),16%)) +@accentSelectionBackground = if(@accentColor, @accentColor, @accentBaseColor) +@accentSliderColor = if(@accentColor, @accentColor, @accentBase2Color) +@accentUnderlineColor = if(@accentColor, @accentColor, @accentBase2Color) +@accentButtonDefaultBackground = if(@accentColor, @accentColor, darken(spin(@accentBaseColor,-8),13%)) + +# for buttons within components (e.g. combobox or spinner) +@buttonArrowColor = shade(@foreground,17%) +@buttonDisabledArrowColor = darken(@buttonArrowColor,25%) +@buttonHoverArrowColor = lighten(@buttonArrowColor,10%,derived noAutoInverse) +@buttonPressedArrowColor = lighten(@buttonArrowColor,20%,derived noAutoInverse) + +# Drop (use lazy colors for IntelliJ platform themes, which usually do not specify these colors) +@dropCellBackground = darken(List.selectionBackground,10%,lazy) +@dropCellForeground = lazy(List.selectionForeground) +@dropLineColor = lighten(List.selectionBackground,10%,lazy) +@dropLineShortColor = lighten(List.selectionBackground,30%,lazy) + + +#---- system colors ---- + +activeCaption = #434E60 +inactiveCaption = #393C3D +controlHighlight = darken($controlShadow,20%) +controlLtHighlight = darken($controlShadow,25%) +controlDkShadow = lighten($controlShadow,10%) + + +#---- Button ---- + +Button.background = @buttonBackground +Button.hoverBackground = lighten($Button.background,3%,derived) +Button.pressedBackground = lighten($Button.background,6%,derived) +Button.selectedBackground = lighten($Button.background,10%,derived) +Button.selectedForeground = $Button.foreground +Button.disabledSelectedBackground = lighten($Button.background,3%,derived) + +Button.borderColor = tint($Button.background,10%) +Button.disabledBorderColor = $Button.borderColor +Button.focusedBorderColor = $Component.focusedBorderColor +Button.hoverBorderColor = $Button.focusedBorderColor + +Button.innerFocusWidth = 1 + +Button.default.background = @accentButtonDefaultBackground +Button.default.foreground = contrast($Button.default.background, @background, $Button.foreground, 25%) +Button.default.hoverBackground = lighten($Button.default.background,3%,derived) +Button.default.pressedBackground = lighten($Button.default.background,6%,derived) +Button.default.borderColor = tint($Button.default.background,15%) +Button.default.hoverBorderColor = tint($Button.default.background,18%) +Button.default.focusedBorderColor = $Button.default.hoverBorderColor +Button.default.focusColor = lighten($Component.focusColor,3%) +Button.default.boldText = true + +Button.toolbar.hoverBackground = lighten($Button.background,1%,derived) +Button.toolbar.pressedBackground = lighten($Button.background,4%,derived) +Button.toolbar.selectedBackground = lighten($Button.background,7%,derived) + + +#---- CheckBox ---- + +CheckBox.icon.focusWidth = 1 + +# enabled +CheckBox.icon.borderColor = tint($Component.borderColor,5%) +CheckBox.icon.background = tint(@background,5%) +CheckBox.icon.selectedBorderColor = tint($CheckBox.icon.borderColor,20%) +CheckBox.icon.selectedBackground = $CheckBox.icon.background +CheckBox.icon.checkmarkColor = shade(@foreground,10%) + +# disabled +CheckBox.icon.disabledBorderColor = shade($CheckBox.icon.borderColor,20%) +CheckBox.icon.disabledBackground = @disabledBackground +CheckBox.icon.disabledCheckmarkColor = darken($CheckBox.icon.checkmarkColor,25%) + +# focused +CheckBox.icon.focusedBorderColor = $Component.focusedBorderColor +CheckBox.icon.focusedBackground = fade($CheckBox.icon.focusedBorderColor,30%) + +# hover +CheckBox.icon.hoverBorderColor = $CheckBox.icon.focusedBorderColor +CheckBox.icon.hoverBackground = lighten($CheckBox.icon.background,3%,derived) + +# pressed +CheckBox.icon.pressedBorderColor = $CheckBox.icon.focusedBorderColor +CheckBox.icon.pressedBackground = lighten($CheckBox.icon.background,6%,derived) + + +# used if CheckBox.icon.style or RadioButton.icon.style = filled +# enabled +CheckBox.icon[filled].selectedBorderColor = $CheckBox.icon.checkmarkColor +CheckBox.icon[filled].selectedBackground = $CheckBox.icon.checkmarkColor +CheckBox.icon[filled].checkmarkColor = $CheckBox.icon.background +# hover +CheckBox.icon[filled].hoverSelectedBackground = darken($CheckBox.icon[filled].selectedBackground,3%,derived) +# pressed +CheckBox.icon[filled].pressedSelectedBackground = darken($CheckBox.icon[filled].selectedBackground,6%,derived) + + +#---- CheckBoxMenuItem ---- + +CheckBoxMenuItem.icon.checkmarkColor = @buttonArrowColor +CheckBoxMenuItem.icon.disabledCheckmarkColor = @buttonDisabledArrowColor + + +#---- Component ---- + +Component.borderColor = tint(@background,19%) +Component.disabledBorderColor = $Component.borderColor +Component.focusedBorderColor = lighten($Component.focusColor,5%) +Component.focusColor = @accentFocusColor +Component.linkColor = @accentLinkColor +Component.accentColor = if(@accentColor, @accentColor, @accentBaseColor) +Component.grayFilter = -20,-70,100 + +Component.error.borderColor = desaturate($Component.error.focusedBorderColor,25%) +Component.error.focusedBorderColor = #8b3c3c +Component.warning.borderColor = darken(desaturate($Component.warning.focusedBorderColor,20%),10%) +Component.warning.focusedBorderColor = #ac7920 +Component.custom.borderColor = desaturate(#f00,50%,relative derived noAutoInverse) + + +#---- Desktop ---- + +Desktop.background = #3E434C + + +#---- DesktopIcon ---- + +DesktopIcon.background = lighten($Desktop.background,10%,derived) + + +#---- HelpButton ---- + +HelpButton.questionMarkColor = shade(@foreground,10%) +HelpButton.disabledQuestionMarkColor = tint(@background,30%) + + +#---- InternalFrame ---- + +InternalFrame.activeTitleBackground = darken(@background,10%) +InternalFrame.activeTitleForeground = @foreground +InternalFrame.inactiveTitleBackground = lighten($InternalFrame.activeTitleBackground,5%) +InternalFrame.inactiveTitleForeground = @disabledForeground + +InternalFrame.activeBorderColor = darken(@background,7%) +InternalFrame.inactiveBorderColor = darken(@background,3%) + +InternalFrame.buttonHoverBackground = lighten($InternalFrame.activeTitleBackground,10%,derived) +InternalFrame.buttonPressedBackground = lighten($InternalFrame.activeTitleBackground,20%,derived) +InternalFrame.closeHoverBackground = lazy(Actions.Red) +InternalFrame.closePressedBackground = darken(Actions.Red,10%,lazy) +InternalFrame.closeHoverForeground = #fff +InternalFrame.closePressedForeground = #fff + +InternalFrame.activeDropShadowOpacity = 0.5 +InternalFrame.inactiveDropShadowOpacity = 0.75 + + +#---- Menu ---- + +Menu.icon.arrowColor = @buttonArrowColor +Menu.icon.disabledArrowColor = @buttonDisabledArrowColor + + +#---- MenuBar ---- + +MenuBar.borderColor = $Separator.foreground + + +#---- PasswordField ---- + +PasswordField.capsLockIconColor = #ffffff64 + + +#---- Popup ---- + +Popup.dropShadowColor = #000 +Popup.dropShadowOpacity = 0.25 + + +#---- PopupMenu ---- + +PopupMenu.borderColor = tint(@background,17%) + + +#---- ProgressBar ---- + +ProgressBar.background = lighten(@background,8%) +ProgressBar.foreground = @accentSliderColor +ProgressBar.selectionBackground = @foreground +ProgressBar.selectionForeground = contrast($ProgressBar.foreground, @background, @foreground, 25%) + + +#---- RootPane ---- + +RootPane.activeBorderColor = lighten(@background,7%,derived) +RootPane.inactiveBorderColor = lighten(@background,5%,derived) + + +#---- ScrollBar ---- + +ScrollBar.track = lighten(@background,1%,derived noAutoInverse) +ScrollBar.thumb = lighten($ScrollBar.track,10%,derived noAutoInverse) +ScrollBar.hoverTrackColor = lighten($ScrollBar.track,4%,derived noAutoInverse) +ScrollBar.hoverThumbColor = lighten($ScrollBar.thumb,10%,derived noAutoInverse) +ScrollBar.pressedThumbColor = lighten($ScrollBar.thumb,15%,derived noAutoInverse) +ScrollBar.hoverButtonBackground = lighten(@background,5%,derived noAutoInverse) +ScrollBar.pressedButtonBackground = lighten(@background,10%,derived noAutoInverse) + + +#---- Separator ---- + +Separator.foreground = tint(@background,10%) + + +#---- Slider ---- + +Slider.trackValueColor = @accentSliderColor +Slider.trackColor = lighten(@background,15%) +Slider.thumbColor = $Slider.trackValueColor +Slider.tickColor = @disabledForeground +Slider.focusedColor = fade(changeLightness($Component.focusColor,60%,derived),30%,derived) +Slider.hoverThumbColor = lighten($Slider.thumbColor,5%,derived) +Slider.pressedThumbColor = lighten($Slider.thumbColor,8%,derived) +Slider.disabledTrackColor = lighten(@background,10%) +Slider.disabledThumbColor = $Slider.disabledTrackColor + + +#---- SplitPane ---- + +SplitPaneDivider.draggingColor = $Component.borderColor + + +#---- TabbedPane ---- + +TabbedPane.underlineColor = @accentUnderlineColor +TabbedPane.disabledUnderlineColor = lighten(@background,23%) +TabbedPane.hoverColor = darken($TabbedPane.background,5%,derived noAutoInverse) +TabbedPane.focusColor = mix(@selectionBackground,$TabbedPane.background,25%) +TabbedPane.contentAreaColor = $Component.borderColor + +TabbedPane.buttonHoverBackground = darken($TabbedPane.background,5%,derived noAutoInverse) +TabbedPane.buttonPressedBackground = darken($TabbedPane.background,8%,derived noAutoInverse) + +TabbedPane.closeBackground = null +TabbedPane.closeForeground = @disabledForeground +TabbedPane.closeHoverBackground = lighten($TabbedPane.background,5%,derived) +TabbedPane.closeHoverForeground = @foreground +TabbedPane.closePressedBackground = lighten($TabbedPane.background,10%,derived) +TabbedPane.closePressedForeground = $TabbedPane.closeHoverForeground + + +#---- Table ---- + +Table.gridColor = lighten($Table.background,5%) + + +#---- TableHeader ---- + +TableHeader.separatorColor = lighten($TableHeader.background,10%) +TableHeader.bottomSeparatorColor = $TableHeader.separatorColor + + +#---- TitlePane ---- + +TitlePane.embeddedForeground = darken($TitlePane.foreground,15%) +TitlePane.buttonHoverBackground = lighten($TitlePane.background,15%,derived) +TitlePane.buttonPressedBackground = lighten($TitlePane.background,10%,derived) + + +#---- ToggleButton ---- + +ToggleButton.selectedBackground = lighten($ToggleButton.background,10%,derived) +ToggleButton.disabledSelectedBackground = lighten($ToggleButton.background,3%,derived) + +ToggleButton.toolbar.selectedBackground = lighten($ToggleButton.background,7%,derived) + + +#---- ToolTip ---- + +ToolTip.border = 4,6,4,6 +ToolTip.background = shade(@background,50%) + + +#---- Tree ---- + +Tree.hash = lighten($Tree.background,5%) + + + +#---- Styles ------------------------------------------------------------------ + +#---- inTextField ---- +# for leading/trailing components in text fields + +[style]Button.inTextField = \ + focusable: false; \ + toolbar.margin: 1,1,1,1; \ + toolbar.spacingInsets: 1,1,1,1; \ + toolbar.hoverBackground: fade(Actions.GreyInline,30%,lazy); \ + toolbar.pressedBackground: fade(Actions.GreyInline,40%,lazy); \ + toolbar.selectedBackground: fade(Actions.GreyInline,50%,lazy) diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDefaultsAddon.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDefaultsAddon.class new file mode 100644 index 00000000..39ca2684 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatDefaultsAddon.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatIconColors.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatIconColors.class new file mode 100644 index 00000000..1aa9a87a Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatIconColors.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatInputMaps$LazyInputMapEx.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatInputMaps$LazyInputMapEx.class new file mode 100644 index 00000000..2a4cc5f4 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatInputMaps$LazyInputMapEx.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatInputMaps$LazyModifyInputMap.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatInputMaps$LazyModifyInputMap.class new file mode 100644 index 00000000..03e096fd Binary files /dev/null and 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b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatIntelliJLaf.properties @@ -0,0 +1,71 @@ +# +# Copyright 2019 FormDev Software GmbH +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# + +# +# This file is loaded for "FlatLaf IntelliJ" theme (that extend class FlatIntelliJLaf) +# and for all light IntelliJ Platform themes. +# +# Documentation: +# - https://www.formdev.com/flatlaf/properties-files/ +# - https://www.formdev.com/flatlaf/how-to-customize/ +# +# NOTE: Avoid copying the whole content of this file to own properties files. +# This will make upgrading to newer FlatLaf versions complex and error-prone. +# Instead copy and modify only those properties that you need to alter. +# + +# Colors and style mostly based on IntelliJ theme from IntelliJ IDEA Community Edition, +# which is licensed under the Apache 2.0 license. Copyright 2000-2019 JetBrains s.r.o. +# See: https://github.com/JetBrains/intellij-community/ + +#---- variables ---- + +# accent colors (blueish) +@accentFocusColor = if(@accentColor, lighten(@accentColor,20%), lighten(@accentBaseColor,31%)) +@accentButtonDefaultBackground = if(@accentColor, @accentColor, tint(@accentBaseColor,15%)) + +#---- Button ---- + +Button.focusedBackground = null + +Button.default.background = @accentButtonDefaultBackground +Button.default.foreground = contrast($Button.default.background, tint($Button.foreground,50%), #fff, 50%) +Button.default.focusedBackground = null +Button.default.borderColor = shade($Button.default.background,15%) +Button.default.hoverBorderColor = tint($Button.default.background,50%) +Button.default.focusedBorderColor = $Button.default.hoverBorderColor +Button.default.boldText = true +Button.default.borderWidth = 1 + + +#---- CheckBox ---- + +CheckBox.icon.style = filled +CheckBox.icon.focusWidth = null +CheckBox.icon.focusedBackground = null + + +#---- Component ---- + +Component.focusWidth = 2 +Component.innerFocusWidth = 0 +Component.innerOutlineWidth = 0 +Component.arrowType = triangle + + +#---- RadioButton ---- + +RadioButton.icon.style = filled diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf$ActiveFont.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf$ActiveFont.class new file mode 100644 index 00000000..a42e338a Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf$ActiveFont.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf$DisabledIconProvider.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf$DisabledIconProvider.class new file mode 100644 index 00000000..d015c6d2 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf$DisabledIconProvider.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf$FlatUIDefaults.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf$FlatUIDefaults.class new file mode 100644 index 00000000..dd406bfb Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf$FlatUIDefaults.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf$ImageIconUIResource.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf$ImageIconUIResource.class new file mode 100644 index 00000000..2fb5f675 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf$ImageIconUIResource.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf.class new file mode 100644 index 00000000..c50353ef Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf.properties b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf.properties new file mode 100644 index 00000000..94a29263 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLaf.properties @@ -0,0 +1,924 @@ +# +# Copyright 2019 FormDev Software GmbH +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# + +# +# This file is loaded for all themes. +# +# Documentation: +# - https://www.formdev.com/flatlaf/properties-files/ +# - https://www.formdev.com/flatlaf/how-to-customize/ +# +# NOTE: Avoid copying the whole content of this file to own properties files. +# This will make upgrading to newer FlatLaf versions complex and error-prone. +# Instead copy and modify only those properties that you need to alter. +# + +#---- typography / fonts ---- + +# headings +h00.font = +24 +h0.font = +18 +h1.font = +12 $semibold.font +h2.font = +6 $semibold.font +h3.font = +3 $semibold.font +h4.font = bold + +h1.regular.font = +12 +h2.regular.font = +6 +h3.regular.font = +3 + +# text +large.font = +2 +medium.font = -1 +small.font = -2 +mini.font = -3 + +# default font +#defaultFont = ... + +# font weights +# Windows +[win]light.font = "Segoe UI Light" +[win]semibold.font = "Segoe UI Semibold" +# macOS +[mac]light.font = "HelveticaNeue-Thin" +[mac]semibold.font = "HelveticaNeue-Medium" +# Linux +[linux]light.font = "Lato Light", "Ubuntu Light", "Cantarell Light" +[linux]semibold.font = "Lato Semibold", "Ubuntu Medium", "Montserrat SemiBold" +# fallback for unknown platform +light.font = +0 +semibold.font = +0 + +# monospaced +[win]monospaced.font = Consolas, "Courier New", Monospaced +[mac]monospaced.font = Menlo, Monospaced +[linux]monospaced.font = "Liberation Mono", "Ubuntu Mono", Monospaced +monospaced.font = Monospaced + +# styles +[style].h00 = font: $h00.font +[style].h0 = font: $h0.font +[style].h1 = font: $h1.font +[style].h2 = font: $h2.font +[style].h3 = font: $h3.font +[style].h4 = font: $h4.font +[style].h1.regular = font: $h1.regular.font +[style].h2.regular = font: $h2.regular.font +[style].h3.regular = font: $h3.regular.font +[style].large = font: $large.font +[style].medium = font: $medium.font +[style].small = font: $small.font +[style].mini = font: $mini.font +[style].light = font: $light.font +[style].semibold = font: $semibold.font +[style].monospaced = font: $monospaced.font + + +#---- UI delegates ---- + +ButtonUI = com.formdev.flatlaf.ui.FlatButtonUI +CheckBoxUI = com.formdev.flatlaf.ui.FlatCheckBoxUI +CheckBoxMenuItemUI = com.formdev.flatlaf.ui.FlatCheckBoxMenuItemUI +ColorChooserUI = com.formdev.flatlaf.ui.FlatColorChooserUI +ComboBoxUI = com.formdev.flatlaf.ui.FlatComboBoxUI +DesktopIconUI = com.formdev.flatlaf.ui.FlatDesktopIconUI +DesktopPaneUI = com.formdev.flatlaf.ui.FlatDesktopPaneUI +EditorPaneUI = com.formdev.flatlaf.ui.FlatEditorPaneUI +FileChooserUI = com.formdev.flatlaf.ui.FlatFileChooserUI +FormattedTextFieldUI = com.formdev.flatlaf.ui.FlatFormattedTextFieldUI +InternalFrameUI = com.formdev.flatlaf.ui.FlatInternalFrameUI +LabelUI = com.formdev.flatlaf.ui.FlatLabelUI +ListUI = com.formdev.flatlaf.ui.FlatListUI +MenuUI = com.formdev.flatlaf.ui.FlatMenuUI +MenuBarUI = com.formdev.flatlaf.ui.FlatMenuBarUI +MenuItemUI = com.formdev.flatlaf.ui.FlatMenuItemUI +OptionPaneUI = com.formdev.flatlaf.ui.FlatOptionPaneUI +PanelUI = com.formdev.flatlaf.ui.FlatPanelUI +PasswordFieldUI = com.formdev.flatlaf.ui.FlatPasswordFieldUI +PopupMenuUI = com.formdev.flatlaf.ui.FlatPopupMenuUI +PopupMenuSeparatorUI = com.formdev.flatlaf.ui.FlatPopupMenuSeparatorUI +ProgressBarUI = com.formdev.flatlaf.ui.FlatProgressBarUI +RadioButtonUI = com.formdev.flatlaf.ui.FlatRadioButtonUI +RadioButtonMenuItemUI = com.formdev.flatlaf.ui.FlatRadioButtonMenuItemUI +RootPaneUI = com.formdev.flatlaf.ui.FlatRootPaneUI +ScrollBarUI = com.formdev.flatlaf.ui.FlatScrollBarUI +ScrollPaneUI = com.formdev.flatlaf.ui.FlatScrollPaneUI +SeparatorUI = com.formdev.flatlaf.ui.FlatSeparatorUI +SliderUI = com.formdev.flatlaf.ui.FlatSliderUI +SpinnerUI = com.formdev.flatlaf.ui.FlatSpinnerUI +SplitPaneUI = com.formdev.flatlaf.ui.FlatSplitPaneUI +TabbedPaneUI = com.formdev.flatlaf.ui.FlatTabbedPaneUI +TableUI = com.formdev.flatlaf.ui.FlatTableUI +TableHeaderUI = com.formdev.flatlaf.ui.FlatTableHeaderUI +TextAreaUI = com.formdev.flatlaf.ui.FlatTextAreaUI +TextFieldUI = com.formdev.flatlaf.ui.FlatTextFieldUI +TextPaneUI = com.formdev.flatlaf.ui.FlatTextPaneUI +ToggleButtonUI = com.formdev.flatlaf.ui.FlatToggleButtonUI +ToolBarUI = com.formdev.flatlaf.ui.FlatToolBarUI +ToolBarSeparatorUI = com.formdev.flatlaf.ui.FlatToolBarSeparatorUI +ToolTipUI = com.formdev.flatlaf.ui.FlatToolTipUI +TreeUI = com.formdev.flatlaf.ui.FlatTreeUI +ViewportUI = com.formdev.flatlaf.ui.FlatViewportUI + + +#---- variables ---- + +@componentMargin = 2,6,2,6 +@menuItemMargin = 3,6,3,6 + + +#---- wildcard replacements ---- + +*.background = @background +*.foreground = @foreground +*.disabledBackground = @disabledBackground +*.disabledForeground = @disabledForeground +*.disabledText = @disabledForeground +*.inactiveBackground = @disabledBackground +*.inactiveForeground = @disabledForeground +*.selectionBackground = @selectionBackground +*.selectionForeground = @selectionForeground +*.caretForeground = @foreground +*.acceleratorForeground = @menuAcceleratorForeground +*.acceleratorSelectionForeground = @menuAcceleratorSelectionForeground + + +#---- system colors ---- + +desktop = @componentBackground +activeCaptionText = @foreground +activeCaptionBorder = $activeCaption +inactiveCaptionText = @foreground +inactiveCaptionBorder = $inactiveCaption +window = @background +windowBorder = @foreground +windowText = @foreground +menu = @background +menuText = @foreground +text = @componentBackground +textText = @foreground +textHighlight = @selectionBackground +textHighlightText = @selectionForeground +textInactiveText = @disabledForeground +control = @background +controlText = @foreground +controlShadow = $Component.borderColor +scrollbar = $ScrollBar.track +info = $ToolTip.background +infoText = @foreground + + +#---- unused colors ---- + +# Colors that are defined in BasicLookAndFeel but are not used in FlatLaf. +# Keep them for compatibility (if used in 3rd party app) and give them useful values. + +*.shadow = $controlShadow +*.darkShadow = $controlDkShadow +*.light = $controlHighlight +*.highlight = $controlLtHighlight + +ComboBox.buttonShadow = $controlShadow +ComboBox.buttonDarkShadow = $controlDkShadow +ComboBox.buttonHighlight = $controlLtHighlight + +InternalFrame.borderColor = $control +InternalFrame.borderShadow = $controlShadow +InternalFrame.borderDarkShadow = $controlDkShadow +InternalFrame.borderHighlight = $controlLtHighlight +InternalFrame.borderLight = $controlHighlight + +Label.disabledShadow = $controlShadow + +ScrollBar.trackHighlight = $controlDkShadow +ScrollBar.thumbHighlight = $controlLtHighlight +ScrollBar.thumbDarkShadow = $controlDkShadow +ScrollBar.thumbShadow = $controlShadow + +Slider.focus = $controlDkShadow + +TabbedPane.focus = $controlText + + +#---- Button ---- + +Button.border = com.formdev.flatlaf.ui.FlatButtonBorder +Button.arc = 6 +Button.minimumWidth = 72 +Button.margin = 2,14,2,14 +Button.iconTextGap = 4 +Button.rollover = true +Button.defaultButtonFollowsFocus = false + +Button.borderWidth = 1 +Button.default.borderWidth = 1 + +# for buttons in toolbars +Button.toolbar.margin = 3,3,3,3 +Button.toolbar.spacingInsets = 1,2,1,2 + + +#---- Caret ---- + +Caret.width = {scaledInteger}1 + + +#---- CheckBox ---- + +CheckBox.border = com.formdev.flatlaf.ui.FlatMarginBorder +CheckBox.icon = com.formdev.flatlaf.icons.FlatCheckBoxIcon +CheckBox.arc = 4 +CheckBox.margin = 2,2,2,2 +CheckBox.iconTextGap = 4 +CheckBox.rollover = true + + +#---- CheckBoxMenuItem ---- + +CheckBoxMenuItem.border = com.formdev.flatlaf.ui.FlatMenuItemBorder +CheckBoxMenuItem.checkIcon = com.formdev.flatlaf.icons.FlatCheckBoxMenuItemIcon +CheckBoxMenuItem.arrowIcon = com.formdev.flatlaf.icons.FlatMenuItemArrowIcon +CheckBoxMenuItem.margin = @menuItemMargin +CheckBoxMenuItem.opaque = false +CheckBoxMenuItem.borderPainted = true +CheckBoxMenuItem.background = @menuBackground + + +#---- ColorChooser ---- + +ColorChooser.swatchesSwatchSize = {scaledDimension}16,16 +ColorChooser.swatchesRecentSwatchSize = {scaledDimension}16,16 +ColorChooser.swatchesDefaultRecentColor = $control + + +#---- ComboBox ---- + +ComboBox.border = com.formdev.flatlaf.ui.FlatRoundBorder +ComboBox.padding = @componentMargin +ComboBox.minimumWidth = 72 +ComboBox.editorColumns = 0 +ComboBox.maximumRowCount = 15 +[mac]ComboBox.showPopupOnNavigation = true +# allowed values: auto, button or none +ComboBox.buttonStyle = auto +ComboBox.background = @componentBackground +ComboBox.buttonBackground = $ComboBox.background +ComboBox.buttonEditableBackground = darken($ComboBox.background,2%) +ComboBox.buttonSeparatorColor = $Component.borderColor +ComboBox.buttonDisabledSeparatorColor = $Component.disabledBorderColor +ComboBox.buttonArrowColor = @buttonArrowColor +ComboBox.buttonDisabledArrowColor = @buttonDisabledArrowColor +ComboBox.buttonHoverArrowColor = @buttonHoverArrowColor +ComboBox.buttonPressedArrowColor = @buttonPressedArrowColor + + +#---- Component ---- + +Component.focusWidth = 0 +Component.innerFocusWidth = 0.5 +Component.innerOutlineWidth = 1 +Component.borderWidth = 1 +Component.arc = 5 +Component.minimumWidth = 64 +# allowed values: chevron or triangle +Component.arrowType = chevron +Component.hideMnemonics = true + + +#---- DesktopIcon ---- + +DesktopIcon.border = 4,4,4,4 +DesktopIcon.iconSize = 64,64 +DesktopIcon.closeSize = 20,20 +DesktopIcon.closeIcon = com.formdev.flatlaf.icons.FlatInternalFrameCloseIcon + + +#---- EditorPane ---- + +EditorPane.border = com.formdev.flatlaf.ui.FlatMarginBorder +EditorPane.margin = @componentMargin +EditorPane.background = @componentBackground + + +#---- FileChooser ---- + +FileChooser.newFolderIcon = com.formdev.flatlaf.icons.FlatFileChooserNewFolderIcon +FileChooser.upFolderIcon = com.formdev.flatlaf.icons.FlatFileChooserUpFolderIcon +FileChooser.homeFolderIcon = com.formdev.flatlaf.icons.FlatFileChooserHomeFolderIcon +FileChooser.detailsViewIcon = com.formdev.flatlaf.icons.FlatFileChooserDetailsViewIcon +FileChooser.listViewIcon = com.formdev.flatlaf.icons.FlatFileChooserListViewIcon +FileChooser.usesSingleFilePane = true +[win]FileChooser.useSystemExtensionHiding = true + + +#---- FileView ---- + +FileView.directoryIcon = com.formdev.flatlaf.icons.FlatFileViewDirectoryIcon +FileView.fileIcon = com.formdev.flatlaf.icons.FlatFileViewFileIcon +FileView.computerIcon = com.formdev.flatlaf.icons.FlatFileViewComputerIcon +FileView.hardDriveIcon = com.formdev.flatlaf.icons.FlatFileViewHardDriveIcon +FileView.floppyDriveIcon = com.formdev.flatlaf.icons.FlatFileViewFloppyDriveIcon + + +#---- FormattedTextField ---- + +FormattedTextField.border = com.formdev.flatlaf.ui.FlatTextBorder +FormattedTextField.margin = @componentMargin +FormattedTextField.background = @componentBackground +FormattedTextField.placeholderForeground = @disabledForeground +FormattedTextField.iconTextGap = 4 + + +#---- HelpButton ---- + +HelpButton.icon = com.formdev.flatlaf.icons.FlatHelpButtonIcon +HelpButton.borderColor = $Button.borderColor +HelpButton.disabledBorderColor = $Button.disabledBorderColor +HelpButton.focusedBorderColor = $Button.focusedBorderColor +HelpButton.hoverBorderColor = $?Button.hoverBorderColor +HelpButton.background = $Button.background +HelpButton.disabledBackground = $Button.disabledBackground +HelpButton.focusedBackground = $?Button.focusedBackground +HelpButton.hoverBackground = $?Button.hoverBackground +HelpButton.pressedBackground = $?Button.pressedBackground + +HelpButton.borderWidth = $?Button.borderWidth +HelpButton.innerFocusWidth = $?Button.innerFocusWidth + + +#---- InternalFrame ---- + +InternalFrame.border = com.formdev.flatlaf.ui.FlatInternalFrameUI$FlatInternalFrameBorder +InternalFrame.borderLineWidth = 1 +InternalFrame.borderMargins = 6,6,6,6 +InternalFrame.buttonSize = 24,24 +InternalFrame.closeIcon = com.formdev.flatlaf.icons.FlatInternalFrameCloseIcon +InternalFrame.iconifyIcon = com.formdev.flatlaf.icons.FlatInternalFrameIconifyIcon +InternalFrame.maximizeIcon = com.formdev.flatlaf.icons.FlatInternalFrameMaximizeIcon +InternalFrame.minimizeIcon = com.formdev.flatlaf.icons.FlatInternalFrameRestoreIcon +InternalFrame.windowBindings = null + +# drop shadow +InternalFrame.dropShadowPainted = true +InternalFrame.activeDropShadowColor = null +InternalFrame.activeDropShadowInsets = 5,5,6,6 +InternalFrame.inactiveDropShadowColor = null +InternalFrame.inactiveDropShadowInsets = 3,3,4,4 + + +#---- InternalFrameTitlePane ---- + +InternalFrameTitlePane.border = 0,8,0,0 + + +#---- List ---- + +List.border = 0,0,0,0 +List.cellMargins = 1,6,1,6 +List.cellFocusColor = @cellFocusColor +List.cellNoFocusBorder = com.formdev.flatlaf.ui.FlatListCellBorder$Default +List.focusCellHighlightBorder = com.formdev.flatlaf.ui.FlatListCellBorder$Focused +List.focusSelectedCellHighlightBorder = com.formdev.flatlaf.ui.FlatListCellBorder$Selected +List.background = @componentBackground +List.selectionInactiveBackground = @selectionInactiveBackground +List.selectionInactiveForeground = @selectionInactiveForeground +List.dropCellBackground = @dropCellBackground +List.dropCellForeground = @dropCellForeground +List.dropLineColor = @dropLineColor +List.showCellFocusIndicator = false + + +#---- Menu ---- + +Menu.border = com.formdev.flatlaf.ui.FlatMenuItemBorder +Menu.arrowIcon = com.formdev.flatlaf.icons.FlatMenuArrowIcon +Menu.checkIcon = null +Menu.margin = @menuItemMargin +Menu.submenuPopupOffsetX = {scaledInteger}-4 +Menu.submenuPopupOffsetY = {scaledInteger}-4 +Menu.opaque = false +Menu.borderPainted = true +Menu.background = @menuBackground + + +#---- MenuBar ---- + +MenuBar.border = com.formdev.flatlaf.ui.FlatMenuBarBorder +MenuBar.background = @menuBackground +MenuBar.hoverBackground = @menuHoverBackground +MenuBar.itemMargins = 3,8,3,8 + + +#---- MenuItem ---- + +MenuItem.border = com.formdev.flatlaf.ui.FlatMenuItemBorder +MenuItem.arrowIcon = com.formdev.flatlaf.icons.FlatMenuItemArrowIcon +MenuItem.checkIcon = null +MenuItem.margin = @menuItemMargin +MenuItem.opaque = false +MenuItem.borderPainted = true +MenuItem.verticallyAlignText = true +MenuItem.background = @menuBackground +MenuItem.checkBackground = @menuCheckBackground +MenuItem.checkMargins = 2,2,2,2 +MenuItem.minimumWidth = 72 +MenuItem.minimumIconSize = 16,16 +MenuItem.iconTextGap = 6 +MenuItem.textAcceleratorGap = 24 +MenuItem.textNoAcceleratorGap = 6 +MenuItem.acceleratorArrowGap = 2 +MenuItem.acceleratorDelimiter = + +[mac]MenuItem.acceleratorDelimiter = + +# for MenuItem.selectionType = underline +MenuItem.underlineSelectionBackground = @menuHoverBackground +MenuItem.underlineSelectionCheckBackground = @menuCheckBackground +MenuItem.underlineSelectionColor = @accentUnderlineColor +MenuItem.underlineSelectionHeight = 3 + + +#---- OptionPane ---- + +OptionPane.border = 12,12,12,12 +OptionPane.messageAreaBorder = 0,0,0,0 +OptionPane.buttonAreaBorder = 12,0,0,0 +OptionPane.messageForeground = null + +OptionPane.showIcon = false +OptionPane.maxCharactersPerLine = 80 +OptionPane.iconMessageGap = 16 +OptionPane.messagePadding = 3 +OptionPane.buttonPadding = 8 +OptionPane.buttonMinimumWidth = {scaledInteger}72 +OptionPane.sameSizeButtons = true +OptionPane.setButtonMargin = false +OptionPane.buttonOrientation = 4 +[mac]OptionPane.isYesLast = true + +OptionPane.errorIcon = com.formdev.flatlaf.icons.FlatOptionPaneErrorIcon +OptionPane.informationIcon = com.formdev.flatlaf.icons.FlatOptionPaneInformationIcon +OptionPane.questionIcon = com.formdev.flatlaf.icons.FlatOptionPaneQuestionIcon +OptionPane.warningIcon = com.formdev.flatlaf.icons.FlatOptionPaneWarningIcon + + +#---- PasswordField ---- + +PasswordField.border = com.formdev.flatlaf.ui.FlatTextBorder +PasswordField.margin = @componentMargin +PasswordField.background = @componentBackground +PasswordField.placeholderForeground = @disabledForeground +PasswordField.iconTextGap = 4 +PasswordField.echoChar = \u2022 +PasswordField.showCapsLock = true +PasswordField.showRevealButton = false +PasswordField.capsLockIcon = com.formdev.flatlaf.icons.FlatCapsLockIcon +PasswordField.revealIcon = com.formdev.flatlaf.icons.FlatRevealIcon +PasswordField.revealIconColor = lazy(Actions.Grey) + + +#---- Popup ---- + +Popup.dropShadowPainted = true +Popup.dropShadowInsets = -4,-4,4,4 + + +#---- PopupMenu ---- + +PopupMenu.border = com.formdev.flatlaf.ui.FlatPopupMenuBorder +PopupMenu.borderInsets = 4,1,4,1 +PopupMenu.background = @menuBackground + + +#---- PopupMenuSeparator ---- + +PopupMenuSeparator.height = 9 +PopupMenuSeparator.stripeWidth = 1 +PopupMenuSeparator.stripeIndent = 4 + + +#---- ProgressBar ---- + +ProgressBar.border = com.formdev.flatlaf.ui.FlatEmptyBorder +ProgressBar.arc = 4 +ProgressBar.horizontalSize = 146,4 +ProgressBar.verticalSize = 4,146 +ProgressBar.cycleTime = 4000 +ProgressBar.repaintInterval = 15 +ProgressBar.font = -2 + + +#---- RadioButton ---- + +RadioButton.border = com.formdev.flatlaf.ui.FlatMarginBorder +RadioButton.icon = com.formdev.flatlaf.icons.FlatRadioButtonIcon +RadioButton.icon.centerDiameter = 8 +RadioButton.icon[filled].centerDiameter = 5 +RadioButton.margin = 2,2,2,2 +RadioButton.iconTextGap = 4 +RadioButton.rollover = true + + +#---- RadioButtonMenuItem ---- + +RadioButtonMenuItem.border = com.formdev.flatlaf.ui.FlatMenuItemBorder +RadioButtonMenuItem.checkIcon = com.formdev.flatlaf.icons.FlatRadioButtonMenuItemIcon +RadioButtonMenuItem.arrowIcon = com.formdev.flatlaf.icons.FlatMenuItemArrowIcon +RadioButtonMenuItem.margin = @menuItemMargin +RadioButtonMenuItem.opaque = false +RadioButtonMenuItem.borderPainted = true +RadioButtonMenuItem.background = @menuBackground + + +#---- RootPane ---- + +RootPane.border = com.formdev.flatlaf.ui.FlatRootPaneUI$FlatWindowBorder +RootPane.borderDragThickness = 5 +RootPane.cornerDragWidth = 16 +RootPane.honorFrameMinimumSizeOnResize = false +RootPane.honorDialogMinimumSizeOnResize = true + + +#---- ScrollBar ---- + +ScrollBar.width = 10 +ScrollBar.minimumThumbSize = 10,10 +ScrollBar.maximumThumbSize = 100000,100000 +ScrollBar.trackInsets = 0,0,0,0 +ScrollBar.thumbInsets = 0,0,0,0 +ScrollBar.trackArc = 0 +ScrollBar.thumbArc = 0 +ScrollBar.hoverThumbWithTrack = false +ScrollBar.pressedThumbWithTrack = false +ScrollBar.showButtons = false +ScrollBar.squareButtons = false +ScrollBar.buttonArrowColor = @buttonArrowColor +ScrollBar.buttonDisabledArrowColor = @buttonDisabledArrowColor +ScrollBar.allowsAbsolutePositioning = true + +[mac]ScrollBar.minimumThumbSize = 18,18 +[mac]ScrollBar.thumbInsets = 2,2,2,2 +[mac]ScrollBar.thumbArc = 999 +[mac]ScrollBar.hoverThumbWithTrack = true + +[linux]ScrollBar.minimumThumbSize = 18,18 +[linux]ScrollBar.thumbInsets = 2,2,2,2 +[linux]ScrollBar.thumbArc = 999 + + +#---- ScrollPane ---- + +ScrollPane.border = com.formdev.flatlaf.ui.FlatBorder +ScrollPane.background = $ScrollBar.track +ScrollPane.fillUpperCorner = true +ScrollPane.smoothScrolling = true + + +#---- SearchField ---- + +SearchField.searchIconColor = fade(Actions.GreyInline,90%,lazy) +SearchField.searchIconHoverColor = fade(Actions.GreyInline,70%,lazy) +SearchField.searchIconPressedColor = fade(Actions.GreyInline,50%,lazy) + +SearchField.clearIconColor = fade(Actions.GreyInline,50%,lazy) +SearchField.clearIconHoverColor = $SearchField.clearIconColor +SearchField.clearIconPressedColor = fade(Actions.GreyInline,80%,lazy) + + +#---- Separator ---- + +Separator.height = 3 +Separator.stripeWidth = 1 +Separator.stripeIndent = 1 + + +#---- Slider ---- + +Slider.focusInsets = 0,0,0,0 +Slider.trackWidth = 2 +Slider.thumbSize = 12,12 +Slider.focusWidth = 4 + + +#---- Spinner ---- + +Spinner.border = com.formdev.flatlaf.ui.FlatRoundBorder +Spinner.background = @componentBackground +Spinner.buttonBackground = darken($Spinner.background,2%) +Spinner.buttonSeparatorColor = $Component.borderColor +Spinner.buttonDisabledSeparatorColor = $Component.disabledBorderColor +Spinner.buttonArrowColor = @buttonArrowColor +Spinner.buttonDisabledArrowColor = @buttonDisabledArrowColor +Spinner.buttonHoverArrowColor = @buttonHoverArrowColor +Spinner.buttonPressedArrowColor = @buttonPressedArrowColor +Spinner.padding = @componentMargin +Spinner.editorBorderPainted = false +# allowed values: button or none +Spinner.buttonStyle = button + + +#---- SplitPane ---- + +SplitPane.dividerSize = 5 +SplitPane.continuousLayout = true +SplitPane.border = null +SplitPane.centerOneTouchButtons = true +SplitPane.oneTouchButtonSize = {scaledInteger}6 +SplitPane.oneTouchButtonOffset = {scaledInteger}2 + +SplitPaneDivider.border = null +SplitPaneDivider.oneTouchArrowColor = @buttonArrowColor +SplitPaneDivider.oneTouchHoverArrowColor = @buttonHoverArrowColor +SplitPaneDivider.oneTouchPressedArrowColor = @buttonPressedArrowColor +# allowed values: grip or plain +SplitPaneDivider.style = grip +SplitPaneDivider.gripColor = @icon +SplitPaneDivider.gripDotCount = 3 +SplitPaneDivider.gripDotSize = 3 +SplitPaneDivider.gripGap = 2 + + +#---- TabbedPane ---- + +TabbedPane.tabHeight = 32 +TabbedPane.tabSelectionHeight = 3 +TabbedPane.cardTabSelectionHeight = 2 +TabbedPane.contentSeparatorHeight = 1 +TabbedPane.showTabSeparators = false +TabbedPane.tabSeparatorsFullHeight = false +TabbedPane.hasFullBorder = false +TabbedPane.tabInsets = 4,12,4,12 +TabbedPane.tabAreaInsets = 0,0,0,0 +TabbedPane.selectedTabPadInsets = 0,0,0,0 +TabbedPane.tabRunOverlay = 0 +TabbedPane.tabsOverlapBorder = false +TabbedPane.disabledForeground = @disabledForeground +TabbedPane.shadow = @background +TabbedPane.contentBorderInsets = null +# allowed values: moreTabsButton or arrowButtons +TabbedPane.hiddenTabsNavigation = moreTabsButton +# allowed values: leading, trailing, center or fill +TabbedPane.tabAreaAlignment = leading +# allowed values: leading, trailing or center +TabbedPane.tabAlignment = center +# allowed values: preferred, equal or compact +TabbedPane.tabWidthMode = preferred + +# allowed values: underlined or card +TabbedPane.tabType = underlined + +# allowed values: chevron or triangle +TabbedPane.arrowType = chevron +TabbedPane.buttonInsets = 2,1,2,1 +TabbedPane.buttonArc = $Button.arc + +# allowed values: wrap or scroll +#TabbedPane.tabLayoutPolicy = scroll +# allowed values: never or asNeeded +TabbedPane.tabsPopupPolicy = asNeeded +# allowed values: never, asNeeded or asNeededSingle +TabbedPane.scrollButtonsPolicy = asNeededSingle +# allowed values: both or trailing +TabbedPane.scrollButtonsPlacement = both + +TabbedPane.closeIcon = com.formdev.flatlaf.icons.FlatTabbedPaneCloseIcon +TabbedPane.closeSize = 16,16 +TabbedPane.closeArc = 4 +TabbedPane.closeCrossPlainSize = 7.5 +TabbedPane.closeCrossFilledSize = $TabbedPane.closeCrossPlainSize +TabbedPane.closeCrossLineWidth = 1 + + +#---- Table ---- + +Table.rowHeight = 20 +Table.showHorizontalLines = false +Table.showVerticalLines = false +Table.showTrailingVerticalLine = false +Table.consistentHomeEndKeyBehavior = true +Table.intercellSpacing = 0,0 +Table.scrollPaneBorder = com.formdev.flatlaf.ui.FlatBorder +Table.ascendingSortIcon = com.formdev.flatlaf.icons.FlatAscendingSortIcon +Table.descendingSortIcon = com.formdev.flatlaf.icons.FlatDescendingSortIcon +Table.sortIconColor = @icon +Table.cellMargins = 2,3,2,3 +Table.cellFocusColor = @cellFocusColor +Table.cellNoFocusBorder = com.formdev.flatlaf.ui.FlatTableCellBorder$Default +Table.focusCellHighlightBorder = com.formdev.flatlaf.ui.FlatTableCellBorder$Focused +Table.focusSelectedCellHighlightBorder = com.formdev.flatlaf.ui.FlatTableCellBorder$Selected +Table.focusCellBackground = $Table.background +Table.focusCellForeground = $Table.foreground +Table.background = @componentBackground +Table.selectionInactiveBackground = @selectionInactiveBackground +Table.selectionInactiveForeground = @selectionInactiveForeground +Table.dropCellBackground = @dropCellBackground +Table.dropCellForeground = @dropCellForeground +Table.dropLineColor = @dropLineColor +Table.dropLineShortColor = @dropLineShortColor + + +#---- TableHeader ---- + +TableHeader.height = 25 +TableHeader.cellBorder = com.formdev.flatlaf.ui.FlatTableHeaderBorder +TableHeader.cellMargins = 2,3,2,3 +TableHeader.focusCellBackground = $TableHeader.background +TableHeader.background = @componentBackground +TableHeader.showTrailingVerticalLine = false + + +#---- TextArea ---- + +TextArea.border = com.formdev.flatlaf.ui.FlatMarginBorder +TextArea.margin = @componentMargin +TextArea.background = @componentBackground + + +#---- TextComponent ---- + +# allowed values: never, once or always +TextComponent.selectAllOnFocusPolicy = once +TextComponent.selectAllOnMouseClick = false +TextComponent.arc = 0 + + +#---- TextField ---- + +TextField.border = com.formdev.flatlaf.ui.FlatTextBorder +TextField.margin = @componentMargin +TextField.background = @componentBackground +TextField.placeholderForeground = @disabledForeground +TextField.iconTextGap = 4 + + +#---- TextPane ---- + +TextPane.border = com.formdev.flatlaf.ui.FlatMarginBorder +TextPane.margin = @componentMargin +TextPane.background = @componentBackground + + +#---- TitledBorder ---- + +TitledBorder.titleColor = @foreground +TitledBorder.border = 1,1,1,1,$Separator.foreground + + +#---- TitlePane ---- + +TitlePane.useWindowDecorations = true +TitlePane.menuBarEmbedded = true +TitlePane.unifiedBackground = true +TitlePane.showIcon = true +TitlePane.noIconLeftGap = 8 +TitlePane.iconSize = 16,16 +TitlePane.iconMargins = 3,8,3,8 +TitlePane.titleMargins = 3,0,3,0 +TitlePane.buttonSize = 44,30 +TitlePane.buttonMaximizedHeight = 22 +TitlePane.centerTitle = false +TitlePane.centerTitleIfMenuBarEmbedded = true +TitlePane.menuBarTitleGap = 20 +TitlePane.closeIcon = com.formdev.flatlaf.icons.FlatWindowCloseIcon +TitlePane.iconifyIcon = com.formdev.flatlaf.icons.FlatWindowIconifyIcon +TitlePane.maximizeIcon = com.formdev.flatlaf.icons.FlatWindowMaximizeIcon +TitlePane.restoreIcon = com.formdev.flatlaf.icons.FlatWindowRestoreIcon + +TitlePane.background = $MenuBar.background +TitlePane.inactiveBackground = $TitlePane.background +TitlePane.foreground = @foreground +TitlePane.inactiveForeground = @disabledForeground + +TitlePane.closeHoverBackground = #c42b1c +TitlePane.closePressedBackground = fade($TitlePane.closeHoverBackground,90%) +TitlePane.closeHoverForeground = #fff +TitlePane.closePressedForeground = #fff + + +#---- ToggleButton ---- + +ToggleButton.border = $Button.border +ToggleButton.margin = $Button.margin +ToggleButton.iconTextGap = $Button.iconTextGap +ToggleButton.rollover = $Button.rollover + +ToggleButton.background = $Button.background +ToggleButton.pressedBackground = $Button.pressedBackground +ToggleButton.selectedForeground = $ToggleButton.foreground + +ToggleButton.toolbar.hoverBackground = $Button.toolbar.hoverBackground +ToggleButton.toolbar.pressedBackground = $Button.toolbar.pressedBackground + +# button type "tab" +ToggleButton.tab.underlineHeight = 2 +ToggleButton.tab.underlineColor = $TabbedPane.underlineColor +ToggleButton.tab.disabledUnderlineColor = $TabbedPane.disabledUnderlineColor +ToggleButton.tab.selectedBackground = $?TabbedPane.selectedBackground +ToggleButton.tab.hoverBackground = $TabbedPane.hoverColor +ToggleButton.tab.focusBackground = $TabbedPane.focusColor + + +#---- ToolBar ---- + +ToolBar.border = com.formdev.flatlaf.ui.FlatToolBarBorder +ToolBar.borderMargins = 2,2,2,2 +ToolBar.isRollover = true +ToolBar.focusableButtons = false +ToolBar.arrowKeysOnlyNavigation = true +ToolBar.floatable = false +ToolBar.gripColor = @icon +ToolBar.dockingBackground = darken($ToolBar.background,5%) +ToolBar.dockingForeground = $Component.borderColor +ToolBar.floatingBackground = $ToolBar.background +ToolBar.floatingForeground = $Component.borderColor + +ToolBar.separatorSize = null +ToolBar.separatorWidth = 7 +ToolBar.separatorColor = $Separator.foreground + +# not used in FlatLaf; intended for custom components in toolbar +# https://github.com/JFormDesigner/FlatLaf/issues/56#issuecomment-586297814 +ToolBar.spacingBorder = $Button.toolbar.spacingInsets + + +#---- ToolTipManager ---- + +ToolTipManager.enableToolTipMode = activeApplication + + +#---- Tree ---- + +Tree.border = 1,1,1,1 +Tree.editorBorder = 1,1,1,1,@cellFocusColor +Tree.background = @componentBackground +Tree.selectionInactiveBackground = @selectionInactiveBackground +Tree.selectionInactiveForeground = @selectionInactiveForeground +Tree.textBackground = $Tree.background +Tree.textForeground = $Tree.foreground +Tree.selectionBorderColor = @cellFocusColor +Tree.dropCellBackground = @dropCellBackground +Tree.dropCellForeground = @dropCellForeground +Tree.dropLineColor = @dropLineColor +Tree.rendererFillBackground = false +Tree.rendererMargins = 1,2,1,2 +Tree.wideSelection = true +Tree.repaintWholeRow = true +Tree.paintLines = false +Tree.showCellFocusIndicator = false +Tree.leftChildIndent = 7 +Tree.rightChildIndent = 11 +Tree.rowHeight = 0 + +Tree.expandedIcon = com.formdev.flatlaf.icons.FlatTreeExpandedIcon +Tree.collapsedIcon = com.formdev.flatlaf.icons.FlatTreeCollapsedIcon +Tree.leafIcon = com.formdev.flatlaf.icons.FlatTreeLeafIcon +Tree.closedIcon = com.formdev.flatlaf.icons.FlatTreeClosedIcon +Tree.openIcon = com.formdev.flatlaf.icons.FlatTreeOpenIcon + +Tree.icon.expandedColor = @icon +Tree.icon.collapsedColor = @icon +Tree.icon.leafColor = @icon +Tree.icon.closedColor = @icon +Tree.icon.openColor = @icon + + + +#---- Styles ------------------------------------------------------------------ + +#---- inTextField ---- +# for leading/trailing components in text fields + +[style]ToggleButton.inTextField = $[style]Button.inTextField + +[style]ToolBar.inTextField = \ + floatable: false; \ + opaque: false; \ + borderMargins: 0,0,0,0 + +[style]ToolBarSeparator.inTextField = \ + separatorWidth: 3 + + +#---- clearButton ---- +# for clear/cancel button in text fields + +[style]Button.clearButton = \ + icon: com.formdev.flatlaf.icons.FlatClearIcon; \ + focusable: false; \ + toolbar.margin: 1,1,1,1; \ + toolbar.spacingInsets: 1,1,1,1; \ + toolbar.hoverBackground: null; \ + toolbar.pressedBackground: null diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLightLaf.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLightLaf.class new file mode 100644 index 00000000..858af764 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLightLaf.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLightLaf.properties b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLightLaf.properties new file mode 100644 index 00000000..e15b6fae --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatLightLaf.properties @@ -0,0 +1,379 @@ +# +# Copyright 2019 FormDev Software GmbH +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# + +# +# This file is loaded for all light themes (that extend class FlatLightLaf). +# +# Documentation: +# - https://www.formdev.com/flatlaf/properties-files/ +# - https://www.formdev.com/flatlaf/how-to-customize/ +# +# NOTE: Avoid copying the whole content of this file to own properties files. +# This will make upgrading to newer FlatLaf versions complex and error-prone. +# Instead copy and modify only those properties that you need to alter. +# + +# Colors and style mostly based on IntelliJ theme from IntelliJ IDEA Community Edition, +# which is licensed under the Apache 2.0 license. Copyright 2000-2019 JetBrains s.r.o. +# See: https://github.com/JetBrains/intellij-community/ + +#---- variables ---- + +# general background and foreground (text color) +@background = #f2f2f2 +@foreground = #000 +@disabledBackground = @background +@disabledForeground = tint(@foreground,55%) + +# component background +@buttonBackground = lighten(@background,5%) +@componentBackground = lighten(@background,5%) +@menuBackground = lighten(@background,5%) + +# selection +@selectionBackground = @accentSelectionBackground +@selectionForeground = contrast(@selectionBackground, @foreground, #fff) +@selectionInactiveBackground = shade(@background,13%) +@selectionInactiveForeground = @foreground + +# menu +@menuHoverBackground = darken(@menuBackground,10%,derived) +@menuCheckBackground = lighten(@selectionBackground,40%,derived noAutoInverse) +@menuAcceleratorForeground = lighten(@foreground,30%) +@menuAcceleratorSelectionForeground = @selectionForeground + +# misc +@cellFocusColor = #000 +@icon = shade(@background,27%) + +# accent colors (blueish) +# set @accentColor to use single accent color or +# modify @accentBaseColor to use variations of accent base color +@accentColor = null +@accentBaseColor = #2675BF +@accentBase2Color = lighten(saturate(@accentBaseColor,10%),6%) +# accent color variations +@accentCheckmarkColor = if(@accentColor, @accentColor, tint(@accentBase2Color,20%)) +@accentFocusColor = if(@accentColor, @accentColor, lighten(@accentBaseColor,31%)) +@accentLinkColor = if(@accentColor, @accentColor, darken(@accentBaseColor,3%)) +@accentSelectionBackground = if(@accentColor, @accentColor, @accentBaseColor) +@accentSliderColor = if(@accentColor, @accentColor, @accentBase2Color) +@accentUnderlineColor = if(@accentColor, @accentColor, tint(@accentBaseColor,10%)) +@accentButtonDefaultBorderColor = if(@accentColor, @accentColor, tint(@accentBase2Color,20%)) + +# for buttons within components (e.g. combobox or spinner) +@buttonArrowColor = tint(@foreground,40%) +@buttonDisabledArrowColor = lighten(@buttonArrowColor,25%) +@buttonHoverArrowColor = lighten(@buttonArrowColor,20%,derived noAutoInverse) +@buttonPressedArrowColor = lighten(@buttonArrowColor,30%,derived noAutoInverse) + +# Drop (use lazy colors for IntelliJ platform themes, which usually do not specify these colors) +@dropCellBackground = lighten(List.selectionBackground,10%,lazy) +@dropCellForeground = lazy(List.selectionForeground) +@dropLineColor = lighten(List.selectionBackground,20%,lazy) +@dropLineShortColor = darken(List.selectionBackground,20%,lazy) + + +#---- system colors ---- + +activeCaption = #99b4d1 +inactiveCaption = #bfcddb +controlHighlight = lighten($controlShadow,12%) +controlLtHighlight = lighten($controlShadow,25%) +controlDkShadow = darken($controlShadow,15%) + + +#---- Button ---- + +Button.background = @buttonBackground +Button.focusedBackground = changeLightness($Component.focusColor,95%) +Button.hoverBackground = darken($Button.background,3%,derived) +Button.pressedBackground = darken($Button.background,10%,derived) +Button.selectedBackground = darken($Button.background,20%,derived) +Button.selectedForeground = $Button.foreground +Button.disabledSelectedBackground = darken($Button.background,13%,derived) + +Button.borderColor = $Component.borderColor +Button.disabledBorderColor = $Component.disabledBorderColor +Button.focusedBorderColor = $Component.focusedBorderColor +Button.hoverBorderColor = $Button.focusedBorderColor + +Button.innerFocusWidth = 0 + +Button.default.background = $Button.background +Button.default.foreground = $Button.foreground +Button.default.focusedBackground = $Button.focusedBackground +Button.default.hoverBackground = darken($Button.default.background,3%,derived) +Button.default.pressedBackground = darken($Button.default.background,10%,derived) +Button.default.borderColor = @accentButtonDefaultBorderColor +Button.default.hoverBorderColor = $Button.hoverBorderColor +Button.default.focusedBorderColor = $Button.focusedBorderColor +Button.default.focusColor = $Component.focusColor +Button.default.borderWidth = 2 + +Button.toolbar.hoverBackground = darken($Button.background,12%,derived) +Button.toolbar.pressedBackground = darken($Button.background,15%,derived) +Button.toolbar.selectedBackground = $Button.selectedBackground + + +#---- CheckBox ---- + +CheckBox.icon.focusWidth = 1 + +# enabled +CheckBox.icon.borderColor = shade($Component.borderColor,10%) +CheckBox.icon.background = @buttonBackground +CheckBox.icon.selectedBorderColor = $CheckBox.icon.checkmarkColor +CheckBox.icon.selectedBackground = $CheckBox.icon.background +CheckBox.icon.checkmarkColor = @accentCheckmarkColor + +# disabled +CheckBox.icon.disabledBorderColor = tint($CheckBox.icon.borderColor,20%) +CheckBox.icon.disabledBackground = @disabledBackground +CheckBox.icon.disabledCheckmarkColor = lighten(changeSaturation($CheckBox.icon.checkmarkColor,0%),5%) + +# focused +CheckBox.icon.focusedBorderColor = shade($Component.focusedBorderColor,10%) +CheckBox.icon.focusedBackground = changeLightness($Component.focusColor,95%) + +# hover +CheckBox.icon.hoverBorderColor = $CheckBox.icon.focusedBorderColor +CheckBox.icon.hoverBackground = darken($CheckBox.icon.background,3%,derived) + +# pressed +CheckBox.icon.pressedBorderColor = $CheckBox.icon.focusedBorderColor +CheckBox.icon.pressedBackground = darken($CheckBox.icon.background,10%,derived) + + +# used if CheckBox.icon.style or RadioButton.icon.style = filled +# enabled +CheckBox.icon[filled].selectedBorderColor = shade($CheckBox.icon[filled].selectedBackground,5%) +CheckBox.icon[filled].selectedBackground = @accentCheckmarkColor +CheckBox.icon[filled].checkmarkColor = @buttonBackground +# focused +CheckBox.icon[filled].focusedSelectedBorderColor = tint($CheckBox.icon[filled].selectedBackground,50%) +CheckBox.icon[filled].focusedSelectedBackground = $CheckBox.icon[filled].selectedBackground +CheckBox.icon[filled].focusedCheckmarkColor = $CheckBox.icon.focusedBackground +# hover +CheckBox.icon[filled].hoverSelectedBackground = darken($CheckBox.icon[filled].selectedBackground,5%,derived) +# pressed +CheckBox.icon[filled].pressedSelectedBackground = darken($CheckBox.icon[filled].selectedBackground,10%,derived) + + +#---- CheckBoxMenuItem ---- + +CheckBoxMenuItem.icon.checkmarkColor = @accentCheckmarkColor +CheckBoxMenuItem.icon.disabledCheckmarkColor = @buttonDisabledArrowColor + + +#---- Component ---- + +Component.borderColor = shade(@background,20%) +Component.disabledBorderColor = tint($Component.borderColor,20%) +Component.focusedBorderColor = shade($Component.focusColor,10%) +Component.focusColor = @accentFocusColor +Component.linkColor = @accentLinkColor +Component.accentColor = if(@accentColor, @accentColor, @accentBaseColor) +Component.grayFilter = 25,-25,100 + +Component.error.borderColor = lighten(desaturate($Component.error.focusedBorderColor,20%),25%) +Component.error.focusedBorderColor = #e53e4d +Component.warning.borderColor = lighten(saturate($Component.warning.focusedBorderColor,25%),20%) +Component.warning.focusedBorderColor = #e2a53a +Component.custom.borderColor = lighten(desaturate(#f00,20%,derived noAutoInverse),25%,derived noAutoInverse) + + +#---- Desktop ---- + +Desktop.background = #E6EBF0 + + +#---- DesktopIcon ---- + +DesktopIcon.background = darken($Desktop.background,10%,derived) + + +#---- HelpButton ---- + +HelpButton.questionMarkColor = @accentCheckmarkColor +HelpButton.disabledQuestionMarkColor = shade(@background,30%) + + +#---- InternalFrame ---- + +InternalFrame.activeTitleBackground = #fff +InternalFrame.activeTitleForeground = @foreground +InternalFrame.inactiveTitleBackground = darken($InternalFrame.activeTitleBackground,2%) +InternalFrame.inactiveTitleForeground = @disabledForeground + +InternalFrame.activeBorderColor = shade(@background,40%) +InternalFrame.inactiveBorderColor = shade(@background,20%) + +InternalFrame.buttonHoverBackground = darken($InternalFrame.activeTitleBackground,10%,derived) +InternalFrame.buttonPressedBackground = darken($InternalFrame.activeTitleBackground,20%,derived) +InternalFrame.closeHoverBackground = lazy(Actions.Red) +InternalFrame.closePressedBackground = darken(Actions.Red,10%,lazy) +InternalFrame.closeHoverForeground = #fff +InternalFrame.closePressedForeground = #fff + +InternalFrame.activeDropShadowOpacity = 0.25 +InternalFrame.inactiveDropShadowOpacity = 0.5 + + +#---- Menu ---- + +Menu.icon.arrowColor = @buttonArrowColor +Menu.icon.disabledArrowColor = @buttonDisabledArrowColor + + +#---- MenuBar ---- + +MenuBar.borderColor = $Separator.foreground + + +#---- PasswordField ---- + +PasswordField.capsLockIconColor = #00000064 + + +#---- Popup ---- + +Popup.dropShadowColor = #000 +Popup.dropShadowOpacity = 0.15 + + +#---- PopupMenu ---- + +PopupMenu.borderColor = shade(@background,28%) + + +#---- ProgressBar ---- + +ProgressBar.background = darken(@background,13%) +ProgressBar.foreground = @accentSliderColor +ProgressBar.selectionBackground = @foreground +ProgressBar.selectionForeground = contrast($ProgressBar.foreground, @foreground, @componentBackground) + + +#---- RootPane ---- + +RootPane.activeBorderColor = darken(@background,50%,derived) +RootPane.inactiveBorderColor = darken(@background,30%,derived) + + +#---- ScrollBar ---- + +ScrollBar.track = lighten(@background,1%,derived noAutoInverse) +ScrollBar.thumb = darken($ScrollBar.track,10%,derived noAutoInverse) +ScrollBar.hoverTrackColor = darken($ScrollBar.track,3%,derived noAutoInverse) +ScrollBar.hoverThumbColor = darken($ScrollBar.thumb,10%,derived noAutoInverse) +ScrollBar.pressedThumbColor = darken($ScrollBar.thumb,20%,derived noAutoInverse) +ScrollBar.hoverButtonBackground = darken(@background,5%,derived noAutoInverse) +ScrollBar.pressedButtonBackground = darken(@background,10%,derived noAutoInverse) + + +#---- Separator ---- + +Separator.foreground = shade(@background,15%) + + +#---- Slider ---- + +Slider.trackValueColor = @accentSliderColor +Slider.trackColor = darken(@background,18%) +Slider.thumbColor = $Slider.trackValueColor +Slider.tickColor = @disabledForeground +Slider.focusedColor = fade(changeLightness($Component.focusColor,75%,derived),50%,derived) +Slider.hoverThumbColor = darken($Slider.thumbColor,5%,derived) +Slider.pressedThumbColor = darken($Slider.thumbColor,8%,derived) +Slider.disabledTrackColor = darken(@background,13%) +Slider.disabledThumbColor = $Slider.disabledTrackColor + + +#---- SplitPane ---- + +SplitPaneDivider.draggingColor = $Component.borderColor + + +#---- TabbedPane ---- + +TabbedPane.underlineColor = @accentUnderlineColor +TabbedPane.disabledUnderlineColor = darken(@background,28%) +TabbedPane.hoverColor = darken($TabbedPane.background,7%,derived) +TabbedPane.focusColor = mix(@selectionBackground,$TabbedPane.background,10%) +TabbedPane.contentAreaColor = $Component.borderColor + +TabbedPane.buttonHoverBackground = darken($TabbedPane.background,7%,derived) +TabbedPane.buttonPressedBackground = darken($TabbedPane.background,10%,derived) + +TabbedPane.closeBackground = null +TabbedPane.closeForeground = @disabledForeground +TabbedPane.closeHoverBackground = darken($TabbedPane.background,20%,derived) +TabbedPane.closeHoverForeground = @foreground +TabbedPane.closePressedBackground = darken($TabbedPane.background,25%,derived) +TabbedPane.closePressedForeground = $TabbedPane.closeHoverForeground + + +#---- Table ---- + +Table.gridColor = darken($Table.background,5%) + + +#---- TableHeader ---- + +TableHeader.separatorColor = darken($TableHeader.background,10%) +TableHeader.bottomSeparatorColor = $TableHeader.separatorColor + + +#---- TitlePane ---- + +TitlePane.embeddedForeground = lighten($TitlePane.foreground,35%) +TitlePane.buttonHoverBackground = darken($TitlePane.background,10%,derived) +TitlePane.buttonPressedBackground = darken($TitlePane.background,8%,derived) + + +#---- ToggleButton ---- + +ToggleButton.selectedBackground = darken($ToggleButton.background,20%,derived) +ToggleButton.disabledSelectedBackground = darken($ToggleButton.background,13%,derived) + +ToggleButton.toolbar.selectedBackground = $ToggleButton.selectedBackground + + +#---- ToolTip ---- + +ToolTip.border = 4,6,4,6,shade(@background,40%) +ToolTip.background = lighten(@background,3%) + + +#---- Tree ---- + +Tree.hash = darken($Tree.background,10%) + + + +#---- Styles ------------------------------------------------------------------ + +#---- inTextField ---- +# for leading/trailing components in text fields + +[style]Button.inTextField = \ + focusable: false; \ + toolbar.margin: 1,1,1,1; \ + toolbar.spacingInsets: 1,1,1,1; \ + toolbar.hoverBackground: fade(Actions.GreyInline,10%,lazy); \ + toolbar.pressedBackground: fade(Actions.GreyInline,20%,lazy); \ + toolbar.selectedBackground: fade(Actions.GreyInline,30%,lazy) diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatPropertiesLaf.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatPropertiesLaf.class new file mode 100644 index 00000000..d08a7ecc Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatPropertiesLaf.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatSystemProperties.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatSystemProperties.class new file mode 100644 index 00000000..4c3e07fb Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/FlatSystemProperties.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/IntelliJTheme$ThemeLaf.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/IntelliJTheme$ThemeLaf.class new file mode 100644 index 00000000..c0ad2fb1 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/IntelliJTheme$ThemeLaf.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/IntelliJTheme$ThemeLaf.properties b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/IntelliJTheme$ThemeLaf.properties new file mode 100644 index 00000000..1fc33c99 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/IntelliJTheme$ThemeLaf.properties @@ -0,0 +1,260 @@ +# +# Copyright 2019 FormDev Software GmbH +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# + +# +# This file is loaded for all IntelliJ Platform themes. +# +# Documentation: +# - https://www.formdev.com/flatlaf/properties-files/ +# - https://www.formdev.com/flatlaf/how-to-customize/ +# + +#---- system colors ---- + +# fix (most) system colors because they are usually not set in .json files +desktop = lazy(TextField.background) +activeCaptionText = lazy(TextField.foreground) +inactiveCaptionText = lazy(TextField.foreground) +window = lazy(Panel.background) +windowBorder = lazy(TextField.foreground) +windowText = lazy(TextField.foreground) +menu = lazy(Menu.background) +menuText = lazy(Menu.foreground) +text = lazy(TextField.background) +textText = lazy(TextField.foreground) +textHighlight = lazy(TextField.selectionBackground) +textHighlightText = lazy(TextField.selectionForeground) +textInactiveText = lazy(TextField.inactiveForeground) +control = lazy(Panel.background) +controlText = lazy(TextField.foreground) +info = lazy(ToolTip.background) +infoText = lazy(ToolTip.foreground) + + +#---- Button ---- + +Button.startBackground = $Button.background +Button.endBackground = $Button.background +Button.startBorderColor = $Button.borderColor +Button.endBorderColor = $Button.borderColor + +Button.default.startBackground = $Button.default.background +Button.default.endBackground = $Button.default.background +Button.default.startBorderColor = $Button.default.borderColor +Button.default.endBorderColor = $Button.default.borderColor + +Button.hoverBorderColor = null +Button.default.hoverBorderColor = null + + +#---- CheckBoxMenuItem ---- + +# colors from intellij/checkmark.svg and darcula/checkmark.svg +[light]CheckBoxMenuItem.icon.checkmarkColor=#3E3E3C +[dark]CheckBoxMenuItem.icon.checkmarkColor=#fff9 + + +#---- HelpButton ---- + +HelpButton.hoverBorderColor = null + + +#---- Slider ---- + +Slider.focusedColor = fade($Component.focusColor,40%,derived) + + +#---- ToggleButton ---- + +ToggleButton.startBackground = $ToggleButton.background +ToggleButton.endBackground = $ToggleButton.background +[dark]ToggleButton.selectedBackground = lighten($ToggleButton.background,15%,derived) +[dark]ToggleButton.disabledSelectedBackground = lighten($ToggleButton.background,5%,derived) + + +#---- theme specific ---- + +@ijMenuCheckBackgroundL10 = lighten(@selectionBackground,10%,derived noAutoInverse) +@ijMenuCheckBackgroundL20 = lighten(@selectionBackground,20%,derived noAutoInverse) +@ijMenuCheckBackgroundD10 = darken(@selectionBackground,10%,derived noAutoInverse) + +[Arc_Theme]CheckBoxMenuItem.foreground = lazy(MenuItem.foreground) +[Arc_Theme]PopupMenu.foreground = lazy(MenuItem.foreground) +[Arc_Theme]RadioButtonMenuItem.foreground = lazy(MenuItem.foreground) +[Arc_Theme]ProgressBar.selectionBackground = #000 +[Arc_Theme]ProgressBar.selectionForeground = #fff +[Arc_Theme]List.selectionInactiveForeground = #fff +[Arc_Theme]Table.selectionInactiveForeground = #fff +[Arc_Theme]Tree.selectionInactiveForeground = #fff + +[Arc_Theme_-_Orange]CheckBoxMenuItem.foreground = lazy(MenuItem.foreground) +[Arc_Theme_-_Orange]PopupMenu.foreground = lazy(MenuItem.foreground) +[Arc_Theme_-_Orange]RadioButtonMenuItem.foreground = lazy(MenuItem.foreground) +[Arc_Theme_-_Orange]ProgressBar.selectionBackground = #000 +[Arc_Theme_-_Orange]ProgressBar.selectionForeground = #fff +[Arc_Theme_-_Orange]List.selectionInactiveForeground = #fff +[Arc_Theme_-_Orange]Table.selectionInactiveForeground = #fff +[Arc_Theme_-_Orange]Tree.selectionInactiveForeground = #fff + +[Arc_Theme_Dark]CheckBoxMenuItem.foreground = lazy(MenuItem.foreground) +[Arc_Theme_Dark]PopupMenu.foreground = lazy(MenuItem.foreground) +[Arc_Theme_Dark]RadioButtonMenuItem.foreground = lazy(MenuItem.foreground) +[Arc_Theme_Dark]ProgressBar.selectionBackground = #ddd +[Arc_Theme_Dark]ProgressBar.selectionForeground = #ddd + +[Arc_Theme_Dark_-_Orange]CheckBoxMenuItem.foreground = lazy(MenuItem.foreground) +[Arc_Theme_Dark_-_Orange]PopupMenu.foreground = lazy(MenuItem.foreground) +[Arc_Theme_Dark_-_Orange]RadioButtonMenuItem.foreground = lazy(MenuItem.foreground) +[Arc_Theme_Dark_-_Orange]ProgressBar.selectionBackground = #ddd +[Arc_Theme_Dark_-_Orange]ProgressBar.selectionForeground = #fff + +[Cobalt_2]CheckBox.icon.background = #002946 +[Cobalt_2]CheckBox.icon.checkmarkColor = #002946 +[Cobalt_2]MenuItem.checkBackground = @ijMenuCheckBackgroundL10 +[Cobalt_2]MenuItem.underlineSelectionCheckBackground = @ijMenuCheckBackgroundL10 + +[Cyan_light]MenuItem.checkBackground = @ijMenuCheckBackgroundL20 +[Cyan_light]MenuItem.underlineSelectionCheckBackground = @ijMenuCheckBackgroundL20 + +[Dark_Flat_Theme]TableHeader.background = #3B3B3B + +[Dark_purple]Slider.focusedColor = fade($Component.focusColor,70%,derived) + +[Dracula---Zihan_Ma]ProgressBar.selectionBackground = #fff +[Dracula---Zihan_Ma]ProgressBar.selectionForeground = #fff + +[Gradianto_Dark_Fuchsia]MenuItem.checkBackground = @ijMenuCheckBackgroundL10 +[Gradianto_Dark_Fuchsia]MenuItem.underlineSelectionCheckBackground = @ijMenuCheckBackgroundL10 + +[Gruvbox_Dark_Hard]ToggleButton.selectedBackground = $ToggleButton.selectedBackground +[Gruvbox_Dark_Hard]ToggleButton.toolbar.selectedBackground = $ToggleButton.toolbar.selectedBackground + +[Gruvbox_Dark_Medium]ToggleButton.selectedBackground = $ToggleButton.selectedBackground +[Gruvbox_Dark_Medium]ToggleButton.toolbar.selectedBackground = $ToggleButton.toolbar.selectedBackground + +[Gruvbox_Dark_Soft]MenuItem.checkBackground = @ijMenuCheckBackgroundL10 +[Gruvbox_Dark_Soft]MenuItem.underlineSelectionCheckBackground = @ijMenuCheckBackgroundL10 +[Gruvbox_Dark_Soft]ToggleButton.selectedBackground = $ToggleButton.selectedBackground +[Gruvbox_Dark_Soft]ToggleButton.toolbar.selectedBackground = $ToggleButton.toolbar.selectedBackground + +[Hiberbee_Dark]TabbedPane.focusColor = #5A5A5A +[Hiberbee_Dark]ToggleButton.selectedBackground = $ToggleButton.selectedBackground +[Hiberbee_Dark]ToggleButton.selectedBackground = $ToggleButton.selectedBackground +[Hiberbee_Dark]ToggleButton.toolbar.selectedBackground = $ToggleButton.toolbar.selectedBackground + +[High_contrast]ToggleButton.selectedBackground = #fff +[High_contrast]ToggleButton.selectedForeground = #000 +[High_contrast]ToggleButton.disabledSelectedBackground = #444 +[High_contrast]ToggleButton.toolbar.selectedBackground = #fff + +[Light_Flat]TableHeader.background = #E5E5E9 + +[Monocai]MenuItem.checkBackground = @ijMenuCheckBackgroundL10 +[Monocai]MenuItem.underlineSelectionCheckBackground = @ijMenuCheckBackgroundL10 +@Monocai.acceleratorForeground = lazy(MenuItem.disabledForeground) +@Monocai.acceleratorSelectionForeground = lighten(MenuItem.disabledForeground,10%,lazy) +[Monocai]CheckBoxMenuItem.acceleratorForeground = @Monocai.acceleratorForeground +[Monocai]CheckBoxMenuItem.acceleratorSelectionForeground = @Monocai.acceleratorSelectionForeground +[Monocai]Menu.acceleratorForeground = @Monocai.acceleratorForeground +[Monocai]Menu.acceleratorSelectionForeground = @Monocai.acceleratorSelectionForeground +[Monocai]MenuItem.acceleratorForeground = @Monocai.acceleratorForeground +[Monocai]MenuItem.acceleratorSelectionForeground = @Monocai.acceleratorSelectionForeground +[Monocai]RadioButtonMenuItem.acceleratorForeground = @Monocai.acceleratorForeground +[Monocai]RadioButtonMenuItem.acceleratorSelectionForeground = @Monocai.acceleratorSelectionForeground + +[Nord]MenuItem.checkBackground = @ijMenuCheckBackgroundL10 +[Nord]MenuItem.underlineSelectionCheckBackground = @ijMenuCheckBackgroundL10 + +[One_Dark]MenuItem.checkBackground = @ijMenuCheckBackgroundL10 +[One_Dark]MenuItem.underlineSelectionCheckBackground = @ijMenuCheckBackgroundL10 +[One_Dark]Slider.focusedColor = fade(#568af2,40%) + +[Solarized_Dark---4lex4]Slider.focusedColor = fade($Component.focusColor,80%,derived) + +[vuesion-theme]MenuItem.checkBackground = @ijMenuCheckBackgroundL10 +[vuesion-theme]MenuItem.underlineSelectionCheckBackground = @ijMenuCheckBackgroundL10 +[vuesion-theme]Slider.trackValueColor = #ececee +[vuesion-theme]Slider.trackColor = #303a45 +[vuesion-theme]Slider.thumbColor = #ececee +[vuesion-theme]Slider.focusedColor = fade(#ececee,20%) + + +# Material Theme UI Lite + +[light][author-Mallowigi]MenuItem.checkBackground = @ijMenuCheckBackgroundD10 +[light][author-Mallowigi]MenuItem.underlineSelectionCheckBackground = @ijMenuCheckBackgroundD10 +[dark][author-Mallowigi]MenuItem.checkBackground = @ijMenuCheckBackgroundL20 +[dark][author-Mallowigi]MenuItem.underlineSelectionCheckBackground = @ijMenuCheckBackgroundL20 + +[Dracula---Mallowigi]ProgressBar.selectionBackground = #fff +[Dracula---Mallowigi]ProgressBar.selectionForeground = #fff + +[Dracula_Contrast]ProgressBar.selectionBackground = #fff +[Dracula_Contrast]ProgressBar.selectionForeground = #fff + +[GitHub]ProgressBar.selectionBackground = #222 +[GitHub]ProgressBar.selectionForeground = #222 + +[GitHub_Contrast]ProgressBar.selectionBackground = #222 +[GitHub_Contrast]ProgressBar.selectionForeground = #222 + +[Light_Owl]List.selectionInactiveForeground = lazy(List.foreground) +[Light_Owl]ProgressBar.selectionBackground = #111 +[Light_Owl]ProgressBar.selectionForeground = #fff +[Light_Owl]TabbedPane.selectedForeground = lazy(TabbedPane.foreground) +[Light_Owl]Table.selectionForeground = lazy(Table.foreground) + +[Light_Owl_Contrast]List.selectionInactiveForeground = lazy(List.foreground) +[Light_Owl_Contrast]ProgressBar.selectionBackground = #111 +[Light_Owl_Contrast]ProgressBar.selectionForeground = #fff +[Light_Owl_Contrast]TabbedPane.selectedForeground = lazy(TabbedPane.foreground) +[Light_Owl_Contrast]Table.selectionForeground = lazy(Table.foreground) + +[Material_Lighter]ProgressBar.selectionBackground = #222 +[Material_Lighter]ProgressBar.selectionForeground = #fff + +[Material_Lighter_Contrast]ProgressBar.selectionBackground = #222 +[Material_Lighter_Contrast]ProgressBar.selectionForeground = #fff + +[Material_Oceanic]ProgressBar.selectionBackground = #ddd +[Material_Oceanic]ProgressBar.selectionForeground = #ddd + +[Material_Oceanic_Contrast]ProgressBar.selectionBackground = #ddd +[Material_Oceanic_Contrast]ProgressBar.selectionForeground = #ddd + +[Material_Palenight]ProgressBar.selectionBackground = #ddd +[Material_Palenight]ProgressBar.selectionForeground = #ddd + +[Material_Palenight_Contrast]ProgressBar.selectionBackground = #ddd +[Material_Palenight_Contrast]ProgressBar.selectionForeground = #ddd + +[Night_Owl]ProgressBar.selectionBackground = #ddd +[Night_Owl]ProgressBar.selectionForeground = #ddd + +[Night_Owl_Contrast]ProgressBar.selectionBackground = #ddd +[Night_Owl_Contrast]ProgressBar.selectionForeground = #ddd + +[Solarized_Dark---Mallowigi]ProgressBar.selectionBackground = #ccc +[Solarized_Dark---Mallowigi]ProgressBar.selectionForeground = #ccc + +[Solarized_Dark_Contrast]ProgressBar.selectionBackground = #ccc +[Solarized_Dark_Contrast]ProgressBar.selectionForeground = #ccc + +[Solarized_Light---Mallowigi]ProgressBar.selectionBackground = #222 +[Solarized_Light---Mallowigi]ProgressBar.selectionForeground = #fff + +[Solarized_Light_Contrast]ProgressBar.selectionBackground = #222 +[Solarized_Light_Contrast]ProgressBar.selectionForeground = #fff diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/IntelliJTheme.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/IntelliJTheme.class new file mode 100644 index 00000000..d9360207 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/IntelliJTheme.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/LinuxFontPolicy.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/LinuxFontPolicy.class new file mode 100644 index 00000000..52fad890 Binary files /dev/null and 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diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatInternalFrameAbstractIcon.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatInternalFrameAbstractIcon.class new file mode 100644 index 00000000..51fa5433 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatInternalFrameAbstractIcon.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatInternalFrameCloseIcon.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatInternalFrameCloseIcon.class new file mode 100644 index 00000000..71ca22dc Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatInternalFrameCloseIcon.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatInternalFrameIconifyIcon.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatInternalFrameIconifyIcon.class new file mode 100644 index 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a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatMenuArrowIcon.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatMenuArrowIcon.class new file mode 100644 index 00000000..591def60 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatMenuArrowIcon.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatMenuItemArrowIcon.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatMenuItemArrowIcon.class new file mode 100644 index 00000000..d83e4097 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatMenuItemArrowIcon.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatOptionPaneAbstractIcon.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/icons/FlatOptionPaneAbstractIcon.class new file mode 100644 index 00000000..910467a4 Binary files /dev/null and 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a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/json/Location.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/json/Location.class new file mode 100644 index 00000000..40574d9e Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/json/Location.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/json/ParseException.class b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/json/ParseException.class new file mode 100644 index 00000000..9534ea2d Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/json/ParseException.class differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/natives/flatlaf-windows-x86.dll b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/natives/flatlaf-windows-x86.dll new file mode 100644 index 00000000..c4bc74c8 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/natives/flatlaf-windows-x86.dll differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/natives/flatlaf-windows-x86_64.dll b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/natives/flatlaf-windows-x86_64.dll new file mode 100644 index 00000000..fcff013e Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/natives/flatlaf-windows-x86_64.dll differ diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/resources/Bundle.properties b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/resources/Bundle.properties new file mode 100644 index 00000000..9a671122 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/resources/Bundle.properties @@ -0,0 +1,65 @@ +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# https://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# + +#---- FileChooser ---- + +#fields +FileChooser.lookInLabel.textAndMnemonic = Look &In: +FileChooser.saveInLabelText = Save In: +FileChooser.fileNameLabel.textAndMnemonic = File &Name: +FileChooser.folderNameLabel.textAndMnemonic = Folder &name: +FileChooser.filesOfTypeLabel.textAndMnemonic = Files of &Type: + +# toolbar +FileChooser.upFolderToolTipText = Up One Level +FileChooser.upFolderAccessibleName = Up +FileChooser.homeFolderToolTipText = Home +FileChooser.homeFolderAccessibleName = Home +FileChooser.newFolderToolTipText = Create New Folder +FileChooser.newFolderAccessibleName = New Folder +FileChooser.listViewButtonToolTipText = List +FileChooser.listViewButtonAccessibleName = List +FileChooser.detailsViewButtonToolTipText = Details +FileChooser.detailsViewButtonAccessibleName = Details + +# details table header +FileChooser.fileNameHeaderText = Name +FileChooser.fileSizeHeaderText = Size +FileChooser.fileTypeHeaderText = Type +FileChooser.fileDateHeaderText = Modified +FileChooser.fileAttrHeaderText = Attributes + +# popup menu +FileChooser.viewMenuLabelText = View +FileChooser.refreshActionLabelText = Refresh +FileChooser.newFolderActionLabelText = New Folder +FileChooser.listViewActionLabelText = List +FileChooser.detailsViewActionLabelText = Details + + +#---- SplitPaneDivider ---- + +SplitPaneDivider.collapseLeftToolTipText = Collapse Left Pane +SplitPaneDivider.collapseRightToolTipText = Collapse Right Pane +SplitPaneDivider.collapseTopToolTipText = Collapse Top Pane +SplitPaneDivider.collapseBottomToolTipText = Collapse Bottom Pane +SplitPaneDivider.expandLeftToolTipText = Expand Left Pane +SplitPaneDivider.expandRightToolTipText = Expand Right Pane +SplitPaneDivider.expandTopToolTipText = Expand Top Pane +SplitPaneDivider.expandBottomToolTipText = Expand Bottom Pane + + +#---- TabbedPane ---- + +TabbedPane.moreTabsButtonToolTipText = Show Hidden Tabs diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/resources/Bundle_de.properties b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/resources/Bundle_de.properties new file mode 100644 index 00000000..cd34243d --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/resources/Bundle_de.properties @@ -0,0 +1,53 @@ +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# https://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# + +#---- FileChooser ---- + +#fields +FileChooser.lookInLabel.textAndMnemonic = Suchen &in: +FileChooser.saveInLabelText = Speichern in: +FileChooser.fileNameLabel.textAndMnemonic = &Dateiname: +FileChooser.folderNameLabel.textAndMnemonic = Ordner&name: +FileChooser.filesOfTypeLabel.textAndMnemonic = Datei&typ: + +# toolbar +FileChooser.upFolderToolTipText = Eine Ebene h\u00F6her +FileChooser.upFolderAccessibleName = Nach oben +FileChooser.homeFolderToolTipText = Home +FileChooser.homeFolderAccessibleName = Home +FileChooser.newFolderToolTipText = Neuen Ordner erstellen +FileChooser.newFolderAccessibleName = Neuer Ordner +FileChooser.listViewButtonToolTipText = Liste +FileChooser.listViewButtonAccessibleName = Liste +FileChooser.detailsViewButtonToolTipText = Details +FileChooser.detailsViewButtonAccessibleName = Details + +# details table header +FileChooser.fileNameHeaderText = Name +FileChooser.fileSizeHeaderText = Gr\u00F6\u00DFe +FileChooser.fileTypeHeaderText = Typ +FileChooser.fileDateHeaderText = \u00C4nderungsdatum +FileChooser.fileAttrHeaderText = Attribute + +# popup menu +FileChooser.viewMenuLabelText = Ansicht +FileChooser.refreshActionLabelText = Aktualisieren +FileChooser.newFolderActionLabelText = Neuer Ordner +FileChooser.listViewActionLabelText = Liste +FileChooser.detailsViewActionLabelText = Details + + +#---- TabbedPane ---- + +TabbedPane.moreTabsButtonToolTipText = Verdeckte Tabs anzeigen diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/resources/Bundle_fr.properties b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/resources/Bundle_fr.properties new file mode 100644 index 00000000..087bddd5 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/formdev/flatlaf/resources/Bundle_fr.properties @@ -0,0 +1,48 @@ +# +# Licensed under the Apache License, Version 2.0 (the "License"); +# you may not use this file except in compliance with the License. +# You may obtain a copy of the License at +# +# https://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. +# + +#---- FileChooser ---- + +#fields +FileChooser.lookInLabel.textAndMnemonic = Rechercher &dans: +FileChooser.saveInLabelText = Enregistrer dans: +FileChooser.fileNameLabel.textAndMnemonic = &Nom du fichier: +FileChooser.folderNameLabel.textAndMnemonic = &Nom du dossier: +FileChooser.filesOfTypeLabel.textAndMnemonic = &Type de fichier: + +# toolbar +FileChooser.upFolderToolTipText = Remonte d'un niveau +FileChooser.upFolderAccessibleName = Monter +FileChooser.homeFolderToolTipText = R\u00E9pertoire de base +FileChooser.homeFolderAccessibleName = R\u00E9pertoire de base +FileChooser.newFolderToolTipText = Cr\u00E9e un dossier +FileChooser.newFolderAccessibleName = Nouveau dossier +FileChooser.listViewButtonToolTipText = Liste +FileChooser.listViewButtonAccessibleName = Liste +FileChooser.detailsViewButtonToolTipText = D\u00E9tails +FileChooser.detailsViewButtonAccessibleName = D\u00E9tails + +# details table header +FileChooser.fileNameHeaderText = Nom +FileChooser.fileSizeHeaderText = Taille +FileChooser.fileTypeHeaderText = Type +FileChooser.fileDateHeaderText = Modifi\u00E9 +FileChooser.fileAttrHeaderText = Attributs + +# popup menu +FileChooser.viewMenuLabelText = Affichage +FileChooser.refreshActionLabelText = Actualiser +FileChooser.newFolderActionLabelText = Nouveau dossier +FileChooser.listViewActionLabelText = Liste +FileChooser.detailsViewActionLabelText = D\u00E9tails diff --git a/workflow/apps/java/clustering/bin/com/formdev/flatlaf/resources/EmptyPackage.class 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b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages.properties new file mode 100644 index 00000000..104b9135 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages.properties @@ -0,0 +1,12 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +FAILED_TO_INITIALE_DATATYPE_FACTORY = \ + Failed to initialize JAXP 1.3 DatatypeFactory class. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_de.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_de.properties new file mode 100644 index 00000000..b80c9504 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_de.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 2014, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +FAILED_TO_INITIALE_DATATYPE_FACTORY = JAXP 1.3 DatatypeFactory-Klasse konnte nicht initialisiert werden. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_es.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_es.properties new file mode 100644 index 00000000..e5ce6c6d --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_es.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 2014, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +FAILED_TO_INITIALE_DATATYPE_FACTORY = Fallo al inicializar la clase DatatypeFactory de JAXP 1.3. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_fr.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_fr.properties new file mode 100644 index 00000000..61401d9e --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_fr.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 2014, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +FAILED_TO_INITIALE_DATATYPE_FACTORY = Echec de l'initialisation de la classe JAXP 1.3 DatatypeFactory. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_it.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_it.properties new file mode 100644 index 00000000..eb83540f --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_it.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 2014, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +FAILED_TO_INITIALE_DATATYPE_FACTORY = Inizializzazione della classe DatatypeFactory di JAXP 1.3 non riuscita. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_ja.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_ja.properties new file mode 100644 index 00000000..4c12d86f --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_ja.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 2014, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +FAILED_TO_INITIALE_DATATYPE_FACTORY = JAXP 1.3 DatatypeFactory\u30af\u30e9\u30b9\u306e\u521d\u671f\u5316\u306b\u5931\u6557\u3057\u307e\u3057\u305f\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_ko.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_ko.properties new file mode 100644 index 00000000..56901a47 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_ko.properties @@ -0,0 +1,12 @@ +# +# Copyright (c) 2014, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +FAILED_TO_INITIALE_DATATYPE_FACTORY = JAXP 1.3 DatatypeFactory \ud074\ub798\uc2a4 \ucd08\uae30\ud654\ub97c \uc2e4\ud328\ud588\uc2b5\ub2c8\ub2e4. + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_pt_BR.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_pt_BR.properties new file mode 100644 index 00000000..fa7faad3 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_pt_BR.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 2014, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +FAILED_TO_INITIALE_DATATYPE_FACTORY = Falha ao inicializar a classe DatatypeFactory de JAXP 1.3. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_zh_CN.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_zh_CN.properties new file mode 100644 index 00000000..02f3a71b --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_zh_CN.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 2014, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +FAILED_TO_INITIALE_DATATYPE_FACTORY = \u65e0\u6cd5\u521d\u59cb\u5316 JAXP 1.3 DatatypeFactory \u7c7b\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_zh_TW.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_zh_TW.properties new file mode 100644 index 00000000..a184f4aa --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Messages_zh_TW.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 2014, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +FAILED_TO_INITIALE_DATATYPE_FACTORY = \u7121\u6cd5\u8d77\u59cb JAXP 1.3 DatatypeFactory \u985e\u5225. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/StackHelper.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/StackHelper.class new file mode 100644 index 00000000..9a2a7de8 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/StackHelper.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/Utils.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Utils.class new file mode 100644 index 00000000..5825058a Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/Utils.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/ValidationEventLocatorEx.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/ValidationEventLocatorEx.class new file mode 100644 index 00000000..46d19c7c Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/ValidationEventLocatorEx.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/WhiteSpaceProcessor.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/WhiteSpaceProcessor.class new file mode 100644 index 00000000..92db222e Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/WhiteSpaceProcessor.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/XmlAccessorFactory.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/XmlAccessorFactory.class new file mode 100644 index 00000000..145040ed Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/XmlAccessorFactory.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/annotation/OverrideAnnotationOf.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/annotation/OverrideAnnotationOf.class new file mode 100644 index 00000000..dccc9be6 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/annotation/OverrideAnnotationOf.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/annotation/XmlIsSet.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/annotation/XmlIsSet.class new file mode 100644 index 00000000..9d4bdb5b Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/annotation/XmlIsSet.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/annotation/XmlLocation.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/annotation/XmlLocation.class new file mode 100644 index 00000000..3f11e570 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/annotation/XmlLocation.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/AccessorException.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/AccessorException.class new file mode 100644 index 00000000..135a156f Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/AccessorException.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Bridge.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Bridge.class new file mode 100644 index 00000000..c06fa112 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Bridge.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/BridgeContext.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/BridgeContext.class new file mode 100644 index 00000000..9dbe37d2 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/BridgeContext.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/ClassResolver.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/ClassResolver.class new file mode 100644 index 00000000..004c3d48 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/ClassResolver.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/CompositeStructure.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/CompositeStructure.class new file mode 100644 index 00000000..623ec73b Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/CompositeStructure.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/ErrorListener.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/ErrorListener.class new file mode 100644 index 00000000..95fa392d Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/ErrorListener.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/JAXBRIContext.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/JAXBRIContext.class new file mode 100644 index 00000000..6a03f959 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/JAXBRIContext.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages.class new file mode 100644 index 00000000..5415bb12 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages.properties new file mode 100644 index 00000000..4641aa3e --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages.properties @@ -0,0 +1,12 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ARGUMENT_CANT_BE_NULL = \ + Argument(s) "{0}" can''t be null. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_de.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_de.properties new file mode 100644 index 00000000..b4a90d82 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_de.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ARGUMENT_CANT_BE_NULL = Argumente "{0}" m\u00fcssen angegeben werden. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_es.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_es.properties new file mode 100644 index 00000000..d6e15f4a --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_es.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ARGUMENT_CANT_BE_NULL = Los argumentos"{0}" no pueden ser nulos. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_fr.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_fr.properties new file mode 100644 index 00000000..7725b848 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_fr.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ARGUMENT_CANT_BE_NULL = Les arguments "{0}" ne peuvent pas \u00eatre NULL. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_it.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_it.properties new file mode 100644 index 00000000..f3b58f9a --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_it.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ARGUMENT_CANT_BE_NULL = L''argomento o gli argomenti {0} non possono essere nulli. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_ja.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_ja.properties new file mode 100644 index 00000000..78df2436 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_ja.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ARGUMENT_CANT_BE_NULL = \u5f15\u6570"{0}"\u306fnull\u306b\u3067\u304d\u307e\u305b\u3093\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_ko.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_ko.properties new file mode 100644 index 00000000..ba19e8b0 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_ko.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ARGUMENT_CANT_BE_NULL = "{0}" \uc778\uc218\ub294 \ub110\uc77c \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_pt_BR.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_pt_BR.properties new file mode 100644 index 00000000..29b70ac0 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_pt_BR.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ARGUMENT_CANT_BE_NULL = Argumento(s) "{0}" n\u00e3o pode(m) ser nulo(s). diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_zh_CN.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_zh_CN.properties new file mode 100644 index 00000000..33c0442c --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_zh_CN.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ARGUMENT_CANT_BE_NULL = \u53c2\u6570 "{0}" \u4e0d\u80fd\u4e3a\u7a7a\u503c\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_zh_TW.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_zh_TW.properties new file mode 100644 index 00000000..5c19ce59 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Messages_zh_TW.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ARGUMENT_CANT_BE_NULL = \u5f15\u6578 "{0}" \u4e0d\u53ef\u70ba\u7a7a\u503c. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/RawAccessor.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/RawAccessor.class new file mode 100644 index 00000000..696171d0 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/RawAccessor.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/TypeReference.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/TypeReference.class new file mode 100644 index 00000000..b57ead77 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/TypeReference.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Utils$1.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Utils$1.class new file mode 100644 index 00000000..1d6b47ba Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Utils$1.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Utils.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Utils.class new file mode 100644 index 00000000..781c54ca Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/Utils.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameConverter$1.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameConverter$1.class new file mode 100644 index 00000000..66d8a814 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameConverter$1.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameConverter$2.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameConverter$2.class new file mode 100644 index 00000000..95424fca Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameConverter$2.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameConverter$Standard.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameConverter$Standard.class new file mode 100644 index 00000000..1952cc94 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameConverter$Standard.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameConverter.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameConverter.class new file mode 100644 index 00000000..854afabe Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameConverter.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameUtil.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameUtil.class new file mode 100644 index 00000000..f916de33 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/api/impl/NameUtil.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/CharacterEscapeHandler.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/CharacterEscapeHandler.class new file mode 100644 index 00000000..ed90e5e2 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/CharacterEscapeHandler.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/DataWriter.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/DataWriter.class new file mode 100644 index 00000000..8478b56b Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/DataWriter.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/DumbEscapeHandler.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/DumbEscapeHandler.class new file mode 100644 index 00000000..ba7ba39a Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/DumbEscapeHandler.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages.class new file mode 100644 index 00000000..a8776225 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages.properties new file mode 100644 index 00000000..7f69f379 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages.properties @@ -0,0 +1,47 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# +# don't modify nor delete anything for backward compatibility +# + +# Wrapped into a JAXBException. Not concatenated with any other string. +MarshallerImpl.NotMarshallable = \ + the object parameter to marshal() is not marshallable + +# Not concatenated with any other string (written on a separate line). +MarshallerImpl.UnsupportedResult = \ + unsupported javax.xml.parser.transform.Result parameter + +MarshallerImpl.UnsupportedEncoding = \ + unsupported encoding: {0} + +MarshallerImpl.NullWriterParam = \ + StAX writer parameter must not be null + +SAXMarshaller.AssertFailed = \ + assertion failed + +# Printed after [ERROR]: string. +SAXMarshaller.MissingObject = \ + a required object is missing + +# Usage not found. TODO Remove +#SAXMarshaller.MissingObject2 = \ +# a required field "{0}" is missing an object + +SAXMarshaller.DanglingIDREF = \ + A tree contains a reference to ID "{0}" but it's not a part of the object graph + +SAXMarshaller.NotIdentifiable = \ + An object is referenced as IDREF but its ID field is null + +SAX2DOMEx.DomImplDoesntSupportCreateElementNs = \ + DOM implementation ({0} from {1}) is broken. It does not support the createElementNS method. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_de.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_de.properties new file mode 100644 index 00000000..184089ba --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_de.properties @@ -0,0 +1,38 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# +# don't modify nor delete anything for backward compatibility +# + +# Wrapped into a JAXBException. Not concatenated with any other string. +MarshallerImpl.NotMarshallable = die Methode marshal() kann nicht mit Objektparameter verwendet werden + +# Not concatenated with any other string (written on a separate line). +MarshallerImpl.UnsupportedResult = nicht unterst\u00fctzter javax.xml.parser.transform.Result-Parameter + +MarshallerImpl.UnsupportedEncoding = nicht unterst\u00fctzte Codierung: {0} + +MarshallerImpl.NullWriterParam = StAX-Writer-Parameter muss angegeben werden + +SAXMarshaller.AssertFailed = Assertion nicht erfolgreich + +# Printed after [ERROR]: string. +SAXMarshaller.MissingObject = ein erforderliches Objekt fehlt + +# Usage not found. TODO Remove +#SAXMarshaller.MissingObject2 = \ +# a required field "{0}" is missing an object + +SAXMarshaller.DanglingIDREF = Ein Baum enth\u00e4lt eine Referenz auf ID "{0}", ist jedoch nicht Bestandteil des Objektdiagramms + +SAXMarshaller.NotIdentifiable = Ein Objekt wird als IDREF referenziert, das ID-Feld ist jedoch null + +SAX2DOMEx.DomImplDoesntSupportCreateElementNs = DOM-Implementierung ({0} von {1}) ist unterbrochen. Sie unterst\u00fctzt die createElementNS-Methode nicht. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_es.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_es.properties new file mode 100644 index 00000000..6bfd25bf --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_es.properties @@ -0,0 +1,38 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# +# don't modify nor delete anything for backward compatibility +# + +# Wrapped into a JAXBException. Not concatenated with any other string. +MarshallerImpl.NotMarshallable = No es posible utilizar el m\u00e9todo marshal() con el par\u00e1metro de objeto. + +# Not concatenated with any other string (written on a separate line). +MarshallerImpl.UnsupportedResult = Par\u00e1metro javax.xml.parser.transform.Result no soportado. + +MarshallerImpl.UnsupportedEncoding = codificaci\u00f3n no soportada: {0} + +MarshallerImpl.NullWriterParam = El par\u00e1metro de escritor StAX no debe ser nulo + +SAXMarshaller.AssertFailed = fallo de afirmaci\u00f3n + +# Printed after [ERROR]: string. +SAXMarshaller.MissingObject = falta un objeto necesario + +# Usage not found. TODO Remove +#SAXMarshaller.MissingObject2 = \ +# a required field "{0}" is missing an object + +SAXMarshaller.DanglingIDREF = Un \u00e1rbol contiene una referencia al identificador "{0}", pero no forma parte del gr\u00e1fico del objeto + +SAXMarshaller.NotIdentifiable = Se hace referencia a un objeto como IDREF, pero su campo de identificador es nulo + +SAX2DOMEx.DomImplDoesntSupportCreateElementNs = Se ha interrumpido la implantaci\u00f3n de DOM ({0} desde {1}). No soporta el m\u00e9todo createElementNS. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_fr.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_fr.properties new file mode 100644 index 00000000..35298318 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_fr.properties @@ -0,0 +1,38 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# +# don't modify nor delete anything for backward compatibility +# + +# Wrapped into a JAXBException. Not concatenated with any other string. +MarshallerImpl.NotMarshallable = Il n'est pas possible d'utiliser la m\u00e9thode marshal() avec le param\u00e8tre d'objet + +# Not concatenated with any other string (written on a separate line). +MarshallerImpl.UnsupportedResult = param\u00e8tre javax.xml.parser.transform.Result non pris en charge + +MarshallerImpl.UnsupportedEncoding = encodage non pris en charge : {0} + +MarshallerImpl.NullWriterParam = Le param\u00e8tre de processus d'\u00e9criture StAX ne doit pas \u00eatre NULL + +SAXMarshaller.AssertFailed = \u00e9chec de l'assertion + +# Printed after [ERROR]: string. +SAXMarshaller.MissingObject = un objet obligatoire est manquant + +# Usage not found. TODO Remove +#SAXMarshaller.MissingObject2 = \ +# a required field "{0}" is missing an object + +SAXMarshaller.DanglingIDREF = Une arborescence contient une r\u00e9f\u00e9rence \u00e0 l''ID "{0}", mais elle ne fait pas partie du graphique d''objet + +SAXMarshaller.NotIdentifiable = Un objet est r\u00e9f\u00e9renc\u00e9 en tant qu'IDREF mais son champ d'ID est NULL + +SAX2DOMEx.DomImplDoesntSupportCreateElementNs = L''impl\u00e9mentation DOM ({0} \u00e0 partir de {1}) est interrompue. Elle ne prend pas en charge la m\u00e9thode createElementNS. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_it.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_it.properties new file mode 100644 index 00000000..d7ca45cd --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_it.properties @@ -0,0 +1,38 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# +# don't modify nor delete anything for backward compatibility +# + +# Wrapped into a JAXBException. Not concatenated with any other string. +MarshallerImpl.NotMarshallable = impossibile eseguire il marshalling del parametro dell'oggetto di cui eseguire il marshalling () + +# Not concatenated with any other string (written on a separate line). +MarshallerImpl.UnsupportedResult = parametro javax.xml.parser.transform.Result non supportato + +MarshallerImpl.UnsupportedEncoding = codifica non supportata: {0} + +MarshallerImpl.NullWriterParam = il parametro del processo di scrittura StAX non deve essere nullo + +SAXMarshaller.AssertFailed = asserzione non riuscita + +# Printed after [ERROR]: string. +SAXMarshaller.MissingObject = oggetto richiesto mancante + +# Usage not found. TODO Remove +#SAXMarshaller.MissingObject2 = \ +# a required field "{0}" is missing an object + +SAXMarshaller.DanglingIDREF = Una struttura contiene un riferimento all''ID "{0}" ma non fa parte del grafico dell''oggetto + +SAXMarshaller.NotIdentifiable = Viene fatto riferimento a un oggetto come IDREF ma il relativo campo ID \u00e8 nullo + +SAX2DOMEx.DomImplDoesntSupportCreateElementNs = Implementazione DOM ({0} da {1}) interrotta. Non supporta il metodo createElementNS. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_ja.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_ja.properties new file mode 100644 index 00000000..7fe5e0ad --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_ja.properties @@ -0,0 +1,38 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# +# don't modify nor delete anything for backward compatibility +# + +# Wrapped into a JAXBException. Not concatenated with any other string. +MarshallerImpl.NotMarshallable = marshal()\u306eobject\u30d1\u30e9\u30e1\u30fc\u30bf\u304c\u30de\u30fc\u30b7\u30e3\u30ea\u30f3\u30b0\u53ef\u80fd\u3067\u306f\u3042\u308a\u307e\u305b\u3093 + +# Not concatenated with any other string (written on a separate line). +MarshallerImpl.UnsupportedResult = \u30b5\u30dd\u30fc\u30c8\u3055\u308c\u3066\u3044\u306a\u3044javax.xml.parser.transform.Result\u30d1\u30e9\u30e1\u30fc\u30bf + +MarshallerImpl.UnsupportedEncoding = \u30b5\u30dd\u30fc\u30c8\u3055\u308c\u3066\u3044\u306a\u3044\u30a8\u30f3\u30b3\u30fc\u30c7\u30a3\u30f3\u30b0: {0} + +MarshallerImpl.NullWriterParam = StAX writer\u30d1\u30e9\u30e1\u30fc\u30bf\u306fnull\u306b\u3067\u304d\u307e\u305b\u3093 + +SAXMarshaller.AssertFailed = \u30a2\u30b5\u30fc\u30b7\u30e7\u30f3\u306b\u5931\u6557\u3057\u307e\u3057\u305f + +# Printed after [ERROR]: string. +SAXMarshaller.MissingObject = \u5fc5\u9808\u30aa\u30d6\u30b8\u30a7\u30af\u30c8\u304c\u3042\u308a\u307e\u305b\u3093 + +# Usage not found. TODO Remove +#SAXMarshaller.MissingObject2 = \ +# a required field "{0}" is missing an object + +SAXMarshaller.DanglingIDREF = \u30c4\u30ea\u30fc\u306bID "{0}"\u3078\u306e\u53c2\u7167\u304c\u542b\u307e\u308c\u3066\u3044\u307e\u3059\u304c\u3001\u30aa\u30d6\u30b8\u30a7\u30af\u30c8\u30fb\u30b0\u30e9\u30d5\u306e\u4e00\u90e8\u3067\u306f\u3042\u308a\u307e\u305b\u3093 + +SAXMarshaller.NotIdentifiable = \u30aa\u30d6\u30b8\u30a7\u30af\u30c8\u306fIDREF\u3068\u3057\u3066\u53c2\u7167\u3055\u308c\u3066\u3044\u307e\u3059\u304c\u3001ID\u30d5\u30a3\u30fc\u30eb\u30c9\u304cnull\u3067\u3059 + +SAX2DOMEx.DomImplDoesntSupportCreateElementNs = DOM\u5b9f\u88c5({1}\u304b\u3089\u306e{0})\u304c\u58ca\u308c\u3066\u3044\u307e\u3059\u3002createElementNS\u30e1\u30bd\u30c3\u30c9\u3092\u30b5\u30dd\u30fc\u30c8\u3057\u3066\u3044\u307e\u305b\u3093\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_ko.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_ko.properties new file mode 100644 index 00000000..286bea2b --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_ko.properties @@ -0,0 +1,38 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# +# don't modify nor delete anything for backward compatibility +# + +# Wrapped into a JAXBException. Not concatenated with any other string. +MarshallerImpl.NotMarshallable = \uac1d\uccb4 \ub9e4\uac1c\ubcc0\uc218\uc5d0 \ub300\ud574\uc11c\ub294 marshal() \uba54\uc18c\ub4dc\ub97c \uc0ac\uc6a9\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +# Not concatenated with any other string (written on a separate line). +MarshallerImpl.UnsupportedResult = \uc9c0\uc6d0\ub418\uc9c0 \uc54a\ub294 javax.xml.parser.transform.Result \ub9e4\uac1c\ubcc0\uc218 + +MarshallerImpl.UnsupportedEncoding = \uc9c0\uc6d0\ub418\uc9c0 \uc54a\ub294 \uc778\ucf54\ub529: {0} + +MarshallerImpl.NullWriterParam = StAX \uc4f0\uae30 \uc7a5\uce58 \ub9e4\uac1c\ubcc0\uc218\ub294 \ub110\uc774 \uc544\ub2c8\uc5b4\uc57c \ud569\ub2c8\ub2e4. + +SAXMarshaller.AssertFailed = \uba85\uc81c\ub97c \uc2e4\ud328\ud588\uc2b5\ub2c8\ub2e4. + +# Printed after [ERROR]: string. +SAXMarshaller.MissingObject = \ud544\uc218 \uac1d\uccb4\uac00 \ub204\ub77d\ub418\uc5c8\uc2b5\ub2c8\ub2e4. + +# Usage not found. TODO Remove +#SAXMarshaller.MissingObject2 = \ +# a required field "{0}" is missing an object + +SAXMarshaller.DanglingIDREF = \ud2b8\ub9ac\uac00 ID "{0}"\uc5d0 \ub300\ud55c \ucc38\uc870\ub97c \ud3ec\ud568\ud558\uace0 \uc788\uc9c0\ub9cc \uac1d\uccb4 \uadf8\ub798\ud504\uc5d0 \uc18d\ud558\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. + +SAXMarshaller.NotIdentifiable = \uac1d\uccb4\uac00 IDREF\ub85c \ucc38\uc870\ub418\uc5c8\uc9c0\ub9cc \ud574\ub2f9 ID \ud544\ub4dc\uac00 \ub110\uc785\ub2c8\ub2e4. + +SAX2DOMEx.DomImplDoesntSupportCreateElementNs = DOM \uad6c\ud604({1}\uc758 {0})\uc774 \uc911\ub2e8\ub418\uc5c8\uc2b5\ub2c8\ub2e4. createElementNS \uba54\uc18c\ub4dc\ub97c \uc9c0\uc6d0\ud558\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_pt_BR.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_pt_BR.properties new file mode 100644 index 00000000..fa417a61 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_pt_BR.properties @@ -0,0 +1,38 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# +# don't modify nor delete anything for backward compatibility +# + +# Wrapped into a JAXBException. Not concatenated with any other string. +MarshallerImpl.NotMarshallable = o par\u00e2metro do objeto para fazer marshal() n\u00e3o pode ser submetido a marshal + +# Not concatenated with any other string (written on a separate line). +MarshallerImpl.UnsupportedResult = par\u00e2metro javax.xml.parser.transform.Result n\u00e3o suportado + +MarshallerImpl.UnsupportedEncoding = codifica\u00e7\u00e3o n\u00e3o suportada: {0} + +MarshallerImpl.NullWriterParam = o par\u00e2metro do gravador StAX n\u00e3o deve ser nulo + +SAXMarshaller.AssertFailed = falha na asser\u00e7\u00e3o + +# Printed after [ERROR]: string. +SAXMarshaller.MissingObject = n\u00e3o foi encontrado um objeto obrigat\u00f3rio + +# Usage not found. TODO Remove +#SAXMarshaller.MissingObject2 = \ +# a required field "{0}" is missing an object + +SAXMarshaller.DanglingIDREF = Uma \u00e1rvore cont\u00e9m uma refer\u00eancia ao ID "{0}", mas n\u00e3o faz parte do gr\u00e1fico do objeto + +SAXMarshaller.NotIdentifiable = Um objeto \u00e9 mencionado como IDREF, mas seu campo ID \u00e9 nulo + +SAX2DOMEx.DomImplDoesntSupportCreateElementNs = A implementa\u00e7\u00e3o DOM ({0} de {1}) foi interrompida. Ela n\u00e3o suporta o m\u00e9todo createElementNS. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_zh_CN.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_zh_CN.properties new file mode 100644 index 00000000..28e325de --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_zh_CN.properties @@ -0,0 +1,38 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# +# don't modify nor delete anything for backward compatibility +# + +# Wrapped into a JAXBException. Not concatenated with any other string. +MarshallerImpl.NotMarshallable = \u65e0\u6cd5\u4f7f\u7528\u5e26\u6709\u5bf9\u8c61\u53c2\u6570\u7684 marshal() + +# Not concatenated with any other string (written on a separate line). +MarshallerImpl.UnsupportedResult = \u4e0d\u652f\u6301 javax.xml.parser.transform.Result \u53c2\u6570 + +MarshallerImpl.UnsupportedEncoding = \u4e0d\u652f\u6301\u7684\u7f16\u7801: {0} + +MarshallerImpl.NullWriterParam = StAX \u5199\u8fdb\u7a0b\u53c2\u6570\u4e0d\u80fd\u4e3a\u7a7a\u503c + +SAXMarshaller.AssertFailed = \u65ad\u8a00\u5931\u8d25 + +# Printed after [ERROR]: string. +SAXMarshaller.MissingObject = \u7f3a\u5c11\u5fc5\u9700\u7684\u5bf9\u8c61 + +# Usage not found. TODO Remove +#SAXMarshaller.MissingObject2 = \ +# a required field "{0}" is missing an object + +SAXMarshaller.DanglingIDREF = \u6811\u5305\u542b\u5bf9 ID "{0}" \u7684\u5f15\u7528, \u4f46\u4e0d\u662f\u5bf9\u8c61\u56fe\u7684\u4e00\u90e8\u5206 + +SAXMarshaller.NotIdentifiable = \u5bf9\u8c61\u5c06\u4f5c\u4e3a IDREF \u5f15\u7528, \u4f46\u5176 ID \u5b57\u6bb5\u4e3a\u7a7a\u503c + +SAX2DOMEx.DomImplDoesntSupportCreateElementNs = DOM \u5b9e\u73b0 ({0}\u6765\u81ea{1}) \u5df2\u4e2d\u65ad\u3002\u5b83\u4e0d\u652f\u6301 createElementNS \u65b9\u6cd5\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_zh_TW.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_zh_TW.properties new file mode 100644 index 00000000..5108bf1d --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/Messages_zh_TW.properties @@ -0,0 +1,38 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# +# don't modify nor delete anything for backward compatibility +# + +# Wrapped into a JAXBException. Not concatenated with any other string. +MarshallerImpl.NotMarshallable = marshal() \u7684\u7269\u4ef6\u53c3\u6578\u7121\u6cd5\u5c01\u9001\u8655\u7406 + +# Not concatenated with any other string (written on a separate line). +MarshallerImpl.UnsupportedResult = \u4e0d\u652f\u63f4\u7684 javax.xml.parser.transform.Result \u53c3\u6578 + +MarshallerImpl.UnsupportedEncoding = \u4e0d\u652f\u63f4\u7684\u7de8\u78bc: {0} + +MarshallerImpl.NullWriterParam = StAX \u5beb\u5165\u5668\u53c3\u6578\u4e0d\u5f97\u70ba\u7a7a\u503c + +SAXMarshaller.AssertFailed = \u5ba3\u544a\u5931\u6557 + +# Printed after [ERROR]: string. +SAXMarshaller.MissingObject = \u907a\u6f0f\u5fc5\u8981\u7684\u7269\u4ef6 + +# Usage not found. TODO Remove +#SAXMarshaller.MissingObject2 = \ +# a required field "{0}" is missing an object + +SAXMarshaller.DanglingIDREF = \u6a39\u72c0\u7d50\u69cb\u5305\u542b ID "{0}" \u7684\u53c3\u7167, \u4f46\u5b83\u4e0d\u662f\u7269\u4ef6\u5716\u8868\u7684\u4e00\u90e8\u5206 + +SAXMarshaller.NotIdentifiable = \u7269\u4ef6\u88ab\u53c3\u7167\u70ba IDREF, \u4f46\u5176 ID \u6b04\u4f4d\u70ba\u7a7a\u503c + +SAX2DOMEx.DomImplDoesntSupportCreateElementNs = DOM \u5be6\u884c ({1} \u7684 {0}) \u640d\u58de. \u5b83\u4e0d\u652f\u63f4 createElementNS \u65b9\u6cd5. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/MinimumEscapeHandler.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/MinimumEscapeHandler.class new file mode 100644 index 00000000..27de3888 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/MinimumEscapeHandler.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/NamespacePrefixMapper.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/NamespacePrefixMapper.class new file mode 100644 index 00000000..b997d272 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/NamespacePrefixMapper.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/NioEscapeHandler.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/NioEscapeHandler.class new file mode 100644 index 00000000..d3c68455 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/NioEscapeHandler.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/NoEscapeHandler.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/NoEscapeHandler.class new file mode 100644 index 00000000..aee398f5 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/NoEscapeHandler.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/SAX2DOMEx.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/SAX2DOMEx.class new file mode 100644 index 00000000..47cecd54 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/SAX2DOMEx.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/XMLWriter.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/XMLWriter.class new file mode 100644 index 00000000..ae1e5d0b Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/marshaller/XMLWriter.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/DOMScanner.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/DOMScanner.class new file mode 100644 index 00000000..42abcd46 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/DOMScanner.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/InfosetScanner.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/InfosetScanner.class new file mode 100644 index 00000000..1d74c0bc Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/InfosetScanner.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages.class new file mode 100644 index 00000000..43878d0f Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages.properties new file mode 100644 index 00000000..c56daf63 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages.properties @@ -0,0 +1,55 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# +# don't modify nor delete anything for backward compatibility +# + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterElement = \ + Unexpected element '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveElement = \ + Unexpected end of element '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterAttribute = \ + Unexpected attribute '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveAttribute = \ + Unexpected end of attribute '{'{0}'}':{1} + +ContentHandlerEx.UnexpectedText = \ + Unexpected text "{0}" + +# Wrapped into an InternalError. e.g.: java.lang.InternalError: compiler error(unexpectedLeaveChild) +ContentHandlerEx.UnexpectedLeaveChild = \ + compiler error(unexpectedLeaveChild) + +SAXUnmarshallerHandlerImpl.UnexpectedRootElement = \ + unexpected root element {0} + +# Usage not found. TODO Remove +#SAXUnmarshallerHandlerImpl.UnexpectedRootElement2 = \ +# unexpected root element (uri:"{0}", local:"{1}"). Expected elements are {2} + +Util.UndefinedPrefix = \ + undefined prefix: {0} + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.NullReader = \ + reader can not be null + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.IllegalReaderState = \ + reader must be on a START_ELEMENT event, not a {0} event + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_de.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_de.properties new file mode 100644 index 00000000..ed2f61e0 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_de.properties @@ -0,0 +1,46 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +# +# don't modify nor delete anything for backward compatibility +# + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterElement = Unerwartetes Element '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveElement = Unerwartetes Ende von Element '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterAttribute = Unerwartetes Attribut '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveAttribute = Unerwartetes Ende von Attribut '{'{0}'}':{1} + +ContentHandlerEx.UnexpectedText = Unerwarteter Text "{0}" + +# Wrapped into an InternalError. e.g.: java.lang.InternalError: compiler error(unexpectedLeaveChild) +ContentHandlerEx.UnexpectedLeaveChild = Compilerfehler (unexpectedLeaveChild) + +SAXUnmarshallerHandlerImpl.UnexpectedRootElement = unerwartetes Root-Element {0} + +# Usage not found. TODO Remove +#SAXUnmarshallerHandlerImpl.UnexpectedRootElement2 = \ +# unexpected root element (uri:"{0}", local:"{1}"). Expected elements are {2} + +Util.UndefinedPrefix = unerwartetes Pr\u00e4fix: {0} + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.NullReader = Reader darf nicht null sein\t + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.IllegalReaderState = Reader muss auf ein START_ELEMENT-Ereignis gesetzt sein und kein {0}-Ereignis + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_es.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_es.properties new file mode 100644 index 00000000..5cf5703d --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_es.properties @@ -0,0 +1,46 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +# +# don't modify nor delete anything for backward compatibility +# + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterElement = Elemento '{'{0}'}':{1} inesperado + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveElement = Fin de elemento '{'{0}'}':{1} inesperado + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterAttribute = Atributo '{'{0}'}':{1} inesperado + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveAttribute = Fin de atributo '{'{0}'}':{1} inesperado + +ContentHandlerEx.UnexpectedText = Texto "{0}" inesperado + +# Wrapped into an InternalError. e.g.: java.lang.InternalError: compiler error(unexpectedLeaveChild) +ContentHandlerEx.UnexpectedLeaveChild = error del compilador (unexpectedLeaveChild) + +SAXUnmarshallerHandlerImpl.UnexpectedRootElement = elemento ra\u00edz {0} inesperado + +# Usage not found. TODO Remove +#SAXUnmarshallerHandlerImpl.UnexpectedRootElement2 = \ +# unexpected root element (uri:"{0}", local:"{1}"). Expected elements are {2} + +Util.UndefinedPrefix = prefijo no definido: {0} + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.NullReader = El lector no puede ser nulo.\t + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.IllegalReaderState = El lector debe estar en un evento START_ELEMENT, no en un evento {0}. + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_fr.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_fr.properties new file mode 100644 index 00000000..3b57f24e --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_fr.properties @@ -0,0 +1,46 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +# +# don't modify nor delete anything for backward compatibility +# + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterElement = El\u00e9ment '{'{0}'}':{1} inattendu + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveElement = Fin inattendue de l''\u00e9l\u00e9ment '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterAttribute = Attribut '{'{0}'}':{1} inattendu + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveAttribute = Fin inattendue de l''attribut '{'{0}'}':{1} + +ContentHandlerEx.UnexpectedText = Texte "{0}" inattendu + +# Wrapped into an InternalError. e.g.: java.lang.InternalError: compiler error(unexpectedLeaveChild) +ContentHandlerEx.UnexpectedLeaveChild = erreur de compilateur (unexpectedLeaveChild) + +SAXUnmarshallerHandlerImpl.UnexpectedRootElement = \u00e9l\u00e9ment racine {0} inattendu + +# Usage not found. TODO Remove +#SAXUnmarshallerHandlerImpl.UnexpectedRootElement2 = \ +# unexpected root element (uri:"{0}", local:"{1}"). Expected elements are {2} + +Util.UndefinedPrefix = pr\u00e9fixe non d\u00e9fini : {0} + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.NullReader = le processus de lecture ne peut pas \u00eatre NULL\t + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.IllegalReaderState = le processus de lecture doit figurer sur un \u00e9v\u00e9nement START_ELEMENT, et non un \u00e9v\u00e9nement {0} + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_it.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_it.properties new file mode 100644 index 00000000..6ca4dd52 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_it.properties @@ -0,0 +1,46 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +# +# don't modify nor delete anything for backward compatibility +# + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterElement = Elemento imprevisto '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveElement = Fine imprevista dell''elemento '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterAttribute = Attributo imprevisto '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveAttribute = Fine imprevista dell''attributo '{'{0}'}':{1} + +ContentHandlerEx.UnexpectedText = Testo imprevisto "{0}" + +# Wrapped into an InternalError. e.g.: java.lang.InternalError: compiler error(unexpectedLeaveChild) +ContentHandlerEx.UnexpectedLeaveChild = errore del compilatore (unexpectedLeaveChild) + +SAXUnmarshallerHandlerImpl.UnexpectedRootElement = elemento radice imprevisto {0} + +# Usage not found. TODO Remove +#SAXUnmarshallerHandlerImpl.UnexpectedRootElement2 = \ +# unexpected root element (uri:"{0}", local:"{1}"). Expected elements are {2} + +Util.UndefinedPrefix = prefisso non definito: {0} + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.NullReader = il processo di lettura non pu\u00f2 essere nullo\t + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.IllegalReaderState = il processo di lettura deve trovarsi su un evento START_ELEMENT non su un evento {0} + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_ja.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_ja.properties new file mode 100644 index 00000000..2d8e684a --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_ja.properties @@ -0,0 +1,46 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +# +# don't modify nor delete anything for backward compatibility +# + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterElement = \u4e88\u671f\u3057\u306a\u3044\u8981\u7d20'{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveElement = \u4e88\u671f\u3057\u306a\u3044\u8981\u7d20\u306e\u7d42\u308f\u308a'{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterAttribute = \u4e88\u671f\u3057\u306a\u3044\u5c5e\u6027'{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveAttribute = \u4e88\u671f\u3057\u306a\u3044\u5c5e\u6027\u306e\u7d42\u308f\u308a'{'{0}'}':{1} + +ContentHandlerEx.UnexpectedText = \u4e88\u671f\u3057\u306a\u3044\u30c6\u30ad\u30b9\u30c8"{0}" + +# Wrapped into an InternalError. e.g.: java.lang.InternalError: compiler error(unexpectedLeaveChild) +ContentHandlerEx.UnexpectedLeaveChild = \u30b3\u30f3\u30d1\u30a4\u30eb\u30fb\u30a8\u30e9\u30fc(unexpectedLeaveChild) + +SAXUnmarshallerHandlerImpl.UnexpectedRootElement = \u4e88\u671f\u3057\u306a\u3044\u30eb\u30fc\u30c8\u8981\u7d20{0} + +# Usage not found. TODO Remove +#SAXUnmarshallerHandlerImpl.UnexpectedRootElement2 = \ +# unexpected root element (uri:"{0}", local:"{1}"). Expected elements are {2} + +Util.UndefinedPrefix = \u672a\u5b9a\u7fa9\u306e\u63a5\u982d\u8f9e: {0} + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.NullReader = \u30ea\u30fc\u30c0\u30fc\u306fnull\u306b\u3067\u304d\u307e\u305b\u3093\t + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.IllegalReaderState = \u30ea\u30fc\u30c0\u30fc\u306f{0}\u30a4\u30d9\u30f3\u30c8\u3067\u306f\u306a\u304f\u3001START_ELEMENT\u306b\u5b58\u5728\u3059\u308b\u5fc5\u8981\u304c\u3042\u308a\u307e\u3059 + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_ko.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_ko.properties new file mode 100644 index 00000000..a0b3d6ec --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_ko.properties @@ -0,0 +1,46 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +# +# don't modify nor delete anything for backward compatibility +# + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterElement = \uc608\uc0c1\uce58 \uc54a\uc740 '{'{0}'}':{1} \uc694\uc18c + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveElement = \uc608\uc0c1\uce58 \uc54a\uc740 '{'{0}'}':{1} \uc694\uc18c\uc758 \ub05d + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterAttribute = \uc608\uc0c1\uce58 \uc54a\uc740 '{'{0}'}':{1} \uc18d\uc131 + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveAttribute = \uc608\uc0c1\uce58 \uc54a\uc740 '{'{0}'}':{1} \uc18d\uc131\uc758 \ub05d + +ContentHandlerEx.UnexpectedText = \uc608\uc0c1\uce58 \uc54a\uc740 "{0}" \ud14d\uc2a4\ud2b8 + +# Wrapped into an InternalError. e.g.: java.lang.InternalError: compiler error(unexpectedLeaveChild) +ContentHandlerEx.UnexpectedLeaveChild = \ucef4\ud30c\uc77c\ub7ec \uc624\ub958(unexpectedLeaveChild) + +SAXUnmarshallerHandlerImpl.UnexpectedRootElement = \uc608\uc0c1\uce58 \uc54a\uc740 \ub8e8\ud2b8 \uc694\uc18c {0} + +# Usage not found. TODO Remove +#SAXUnmarshallerHandlerImpl.UnexpectedRootElement2 = \ +# unexpected root element (uri:"{0}", local:"{1}"). Expected elements are {2} + +Util.UndefinedPrefix = \uc815\uc758\ub418\uc9c0 \uc54a\uc740 \uc811\ub450\uc5b4: {0} + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.NullReader = \uc77d\uae30 \uc7a5\uce58\ub294 \ub110\uc77c \uc218 \uc5c6\uc2b5\ub2c8\ub2e4.\t + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.IllegalReaderState = \uc77d\uae30 \uc7a5\uce58\ub294 {0} \uc774\ubca4\ud2b8\uac00 \uc544\ub2cc START_ELEMENT \uc774\ubca4\ud2b8\uc5d0 \uc788\uc5b4\uc57c \ud569\ub2c8\ub2e4. + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_pt_BR.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_pt_BR.properties new file mode 100644 index 00000000..6d26bd1a --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_pt_BR.properties @@ -0,0 +1,46 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +# +# don't modify nor delete anything for backward compatibility +# + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterElement = Elemento '{'{0}'}':{1} inesperado + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveElement = Fim inesperado do elemento '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterAttribute = Atributo '{'{0}'}':{1} inesperado + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveAttribute = Fim inesperado do atributo '{'{0}'}':{1} + +ContentHandlerEx.UnexpectedText = Texto "{0}" inesperado + +# Wrapped into an InternalError. e.g.: java.lang.InternalError: compiler error(unexpectedLeaveChild) +ContentHandlerEx.UnexpectedLeaveChild = erro do compilador (unexpectedLeaveChild) + +SAXUnmarshallerHandlerImpl.UnexpectedRootElement = elemento-raiz {0} inesperado + +# Usage not found. TODO Remove +#SAXUnmarshallerHandlerImpl.UnexpectedRootElement2 = \ +# unexpected root element (uri:"{0}", local:"{1}"). Expected elements are {2} + +Util.UndefinedPrefix = prefixo indefinido: {0} + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.NullReader = o leitor n\u00e3o pode ser nulo\t + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.IllegalReaderState = o leitor deve estar em um evento START_ELEMENT, n\u00e3o em um evento {0} + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_zh_CN.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_zh_CN.properties new file mode 100644 index 00000000..ba15e193 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_zh_CN.properties @@ -0,0 +1,46 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +# +# don't modify nor delete anything for backward compatibility +# + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterElement = \u610f\u5916\u7684\u5143\u7d20 '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveElement = \u610f\u5916\u7684\u5143\u7d20\u7ed3\u5c3e '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterAttribute = \u610f\u5916\u7684\u5c5e\u6027 '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveAttribute = \u610f\u5916\u7684\u5c5e\u6027\u7ed3\u5c3e '{'{0}'}':{1} + +ContentHandlerEx.UnexpectedText = \u610f\u5916\u7684\u6587\u672c "{0}" + +# Wrapped into an InternalError. e.g.: java.lang.InternalError: compiler error(unexpectedLeaveChild) +ContentHandlerEx.UnexpectedLeaveChild = \u7f16\u8bd1\u5668\u9519\u8bef (unexpectedLeaveChild) + +SAXUnmarshallerHandlerImpl.UnexpectedRootElement = \u610f\u5916\u7684\u6839\u5143\u7d20{0} + +# Usage not found. TODO Remove +#SAXUnmarshallerHandlerImpl.UnexpectedRootElement2 = \ +# unexpected root element (uri:"{0}", local:"{1}"). Expected elements are {2} + +Util.UndefinedPrefix = \u672a\u5b9a\u4e49\u7684\u524d\u7f00: {0} + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.NullReader = \u8bfb\u8fdb\u7a0b\u4e0d\u80fd\u4e3a\u7a7a\u503c\t + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.IllegalReaderState = \u8bfb\u8fdb\u7a0b\u5fc5\u987b\u4f4d\u4e8e START_ELEMENT \u4e8b\u4ef6\u4e0a, \u800c\u4e0d\u662f{0}\u4e8b\u4ef6\u4e0a + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_zh_TW.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_zh_TW.properties new file mode 100644 index 00000000..d55f894e --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Messages_zh_TW.properties @@ -0,0 +1,46 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +# +# don't modify nor delete anything for backward compatibility +# + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterElement = \u672a\u9810\u671f\u7684\u5143\u7d20 '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveElement = \u672a\u9810\u671f\u7684\u5143\u7d20\u7d50\u5c3e '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedEnterAttribute = \u672a\u9810\u671f\u7684\u5c6c\u6027 '{'{0}'}':{1} + +# {0} - namespace uri, {1} - local name of the attribute/element e.g.: Unexpected end of attribute {http://www.w3.org/XML/1998/namespace}:lang +ContentHandlerEx.UnexpectedLeaveAttribute = \u672a\u9810\u671f\u7684\u5c6c\u6027\u7d50\u5c3e '{'{0}'}':{1} + +ContentHandlerEx.UnexpectedText = \u672a\u9810\u671f\u7684\u6587\u5b57 "{0}" + +# Wrapped into an InternalError. e.g.: java.lang.InternalError: compiler error(unexpectedLeaveChild) +ContentHandlerEx.UnexpectedLeaveChild = \u7de8\u8b6f\u5668\u932f\u8aa4 (unexpectedLeaveChild) + +SAXUnmarshallerHandlerImpl.UnexpectedRootElement = \u672a\u9810\u671f\u7684\u6839\u5143\u7d20 {0} + +# Usage not found. TODO Remove +#SAXUnmarshallerHandlerImpl.UnexpectedRootElement2 = \ +# unexpected root element (uri:"{0}", local:"{1}"). Expected elements are {2} + +Util.UndefinedPrefix = \u672a\u5b9a\u7fa9\u7684\u524d\u7f6e\u78bc: {0} + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.NullReader = \u8b80\u53d6\u5668\u4e0d\u53ef\u70ba\u7a7a\u503c\t + +# Not concatenated with any other string (written on a separate line). +Unmarshaller.IllegalReaderState = \u8b80\u53d6\u5668\u5fc5\u9808\u4f4d\u65bc START_ELEMENT \u4e8b\u4ef6, \u800c\u975e {0} \u4e8b\u4ef6 + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Patcher.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Patcher.class new file mode 100644 index 00000000..771425bc Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/unmarshaller/Patcher.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/AttributesImpl.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/AttributesImpl.class new file mode 100644 index 00000000..d90422ca Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/AttributesImpl.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/SecureLoader$1.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/SecureLoader$1.class new file mode 100644 index 00000000..1eea3d2d Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/SecureLoader$1.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/SecureLoader$2.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/SecureLoader$2.class new file mode 100644 index 00000000..2db34f4e Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/SecureLoader$2.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/SecureLoader$3.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/SecureLoader$3.class new file mode 100644 index 00000000..46d0ae3a Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/SecureLoader$3.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/SecureLoader.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/SecureLoader.class new file mode 100644 index 00000000..cbc7e32d Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/SecureLoader.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/ValidationEventLocatorExImpl.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/ValidationEventLocatorExImpl.class new file mode 100644 index 00000000..c34c970d Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/ValidationEventLocatorExImpl.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/Which.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/Which.class new file mode 100644 index 00000000..79ddaf6c Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/util/Which.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/ClassFactory$1.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/ClassFactory$1.class new file mode 100644 index 00000000..fabc63ca Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/ClassFactory$1.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/ClassFactory$2.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/ClassFactory$2.class new file mode 100644 index 00000000..ef8f1e20 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/ClassFactory$2.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/ClassFactory.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/ClassFactory.class new file mode 100644 index 00000000..8b865da7 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/ClassFactory.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/ContextFactory.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/ContextFactory.class new file mode 100644 index 00000000..94b6d312 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/ContextFactory.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/JAXBContextFactory.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/JAXBContextFactory.class new file mode 100644 index 00000000..208684df Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/JAXBContextFactory.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages.class new file mode 100644 index 00000000..5e1c34e3 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages.properties new file mode 100644 index 00000000..fca8819b --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages.properties @@ -0,0 +1,49 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not concatenated with any other string (written on a separate line). +ILLEGAL_ENTRY = \ + illegal entry: "{0}", entries should be of the form "ClassName" or "OuterClass.InnerClass", not "ClassName.class" or "fully.qualified.ClassName" + +# {0} - class name, {1} - resource location e.g. error loading class "Foo" listed in foo/bar/jaxb.index, make sure that entries are accessable on CLASSPATH and of the form "ClassName" or "OuterClass.InnerClass", not "ClassName.class" or "fully.qualified.ClassName" +ERROR_LOADING_CLASS = \ + error loading class "{0}" listed in {1}, make sure that entries are accessable on CLASSPATH and of the form "ClassName" or "OuterClass.InnerClass", not "ClassName.class" or "fully.qualified.ClassName" + +INVALID_PROPERTY_VALUE = \ + {1} is not a valid value for property "{0}" + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_PROPERTY = \ + property "{0}" is not supported + +#{0} - package name. e.g.: "foo.bar" doesn't contain ObjectFactory.class or jaxb.index +BROKEN_CONTEXTPATH = \ + "{0}" doesn't contain ObjectFactory.class or jaxb.index + +NO_DEFAULT_CONSTRUCTOR_IN_INNER_CLASS = \ + "{0}" is an inner class, and therefore it can never have a default no-argument constructor. Add 'static'. + +INVALID_TYPE_IN_MAP = \ + Map contains a wrong type + +INVALID_JAXP_IMPLEMENTATION = \ + You are running with invalid JAXP api or implementation. JAXP api/implementation of version 1.3.1 (included in JDK6) or higher is required. In case you are using ant, make sure ant 1.7.0 or higher is used - older versions of ant contain JAXP api/impl version 1.2 (in xml-apis.jar). If you want to keep using older ant versions, you have to configure it to use higher the JAXP api/impl versions. + +JAXP_SUPPORTED_PROPERTY =\ + Property "{0}" is supported and has been successfully set by used JAXP implementation. + +JAXP_UNSUPPORTED_PROPERTY =\ + Property "{0}" is not supported by used JAXP implementation. + +JAXP_XML_SECURITY_DISABLED=\ + "Xml Security disabled, no JAXP xsd external access configuration necessary." + +JAXP_EXTERNAL_ACCESS_CONFIGURED=\ + "Detected explicitly JAXP configuration, no JAXP xsd external access configuration necessary." diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_de.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_de.properties new file mode 100644 index 00000000..d9fa1349 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_de.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not concatenated with any other string (written on a separate line). +ILLEGAL_ENTRY = ung\u00fcltiger Eintrag: "{0}", Eintr\u00e4ge m\u00fcssen folgende Form aufweisen "ClassName" oder "OuterClass.InnerClass", nicht "ClassName.class" oder "fully.qualified.ClassName" + +# {0} - class name, {1} - resource location e.g. error loading class "Foo" listed in foo/bar/jaxb.index, make sure that entries are accessable on CLASSPATH and of the form "ClassName" or "OuterClass.InnerClass", not "ClassName.class" or "fully.qualified.ClassName" +ERROR_LOADING_CLASS = Fehler beim Laden der Klasse "{0}", die in {1} aufgef\u00fchrt wird. Stellen Sie sicher, dass die Eintr\u00e4ge in CLASSPATH zug\u00e4nglich sind und die Form "ClassName" oder "OuterClass.InnerClass", und nicht "ClassName.class" oder "fully.qualified.ClassName" haben + +INVALID_PROPERTY_VALUE = {1} ist kein g\u00fcltiger Wert f\u00fcr Eigenschaft "{0}" + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_PROPERTY = Eigenschaft "{0}" wird nicht unterst\u00fctzt. + +#{0} - package name. e.g.: "foo.bar" doesn't contain ObjectFactory.class or jaxb.index +BROKEN_CONTEXTPATH = "{0}" enth\u00e4lt ObjectFactory.class oder jaxb.index nicht + +NO_DEFAULT_CONSTRUCTOR_IN_INNER_CLASS = "{0}" ist eine innere Klasse und kann deshalb niemals einen "no-argument"-Standardkonstruktor haben. F\u00fcgen Sie "static" hinzu. + +INVALID_TYPE_IN_MAP = Zuordnung enth\u00e4lt falschen Typ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_es.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_es.properties new file mode 100644 index 00000000..dddb5b77 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_es.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not concatenated with any other string (written on a separate line). +ILLEGAL_ENTRY = Entrada no v\u00e1lida: "{0}"; las entradas deben tener el formato "ClassName" o "OuterClass.InnerClass", no "ClassName.class" ni "fully.qualified.ClassName". + +# {0} - class name, {1} - resource location e.g. error loading class "Foo" listed in foo/bar/jaxb.index, make sure that entries are accessable on CLASSPATH and of the form "ClassName" or "OuterClass.InnerClass", not "ClassName.class" or "fully.qualified.ClassName" +ERROR_LOADING_CLASS = error al cargar la clase "{0}" que se indica en {1}; aseg\u00farese de que es posible acceder a las entradas en CLASSPATH y que tienen el formato "ClassName" o "OuterClass.InnerClass", no "ClassName.class" ni "fully.qualified.ClassName" + +INVALID_PROPERTY_VALUE = {1} no es un valor v\u00e1lido para la propiedad "{0}" + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_PROPERTY = La propiedad "{0}" no est\u00e1 soportada. + +#{0} - package name. e.g.: "foo.bar" doesn't contain ObjectFactory.class or jaxb.index +BROKEN_CONTEXTPATH = "{0}" no contiene ObjectFactory.class ni jaxb.index + +NO_DEFAULT_CONSTRUCTOR_IN_INNER_CLASS = "{0}"es una clase interna y, por lo tanto, nunca puede tener un constructor sin argumentos por defecto. Agregue ''static''. + +INVALID_TYPE_IN_MAP = La asignaci\u00f3n contiene un tipo incorrecto diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_fr.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_fr.properties new file mode 100644 index 00000000..caa101ba --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_fr.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not concatenated with any other string (written on a separate line). +ILLEGAL_ENTRY = entr\u00e9e "{0}" interdite, les entr\u00e9es doivent \u00eatre au format "ClassName" ou "OuterClass.InnerClass", et non"ClassName.class" ou "fully.qualified.ClassName" + +# {0} - class name, {1} - resource location e.g. error loading class "Foo" listed in foo/bar/jaxb.index, make sure that entries are accessable on CLASSPATH and of the form "ClassName" or "OuterClass.InnerClass", not "ClassName.class" or "fully.qualified.ClassName" +ERROR_LOADING_CLASS = erreur lors du chargement de la classe "{0}" list\u00e9e dans {1}, assurez-vous que les entr\u00e9es sont accessibles sur CLASSPATH et sont au format "ClassName" ou "OuterClass.InnerClass", et non "ClassName.class" ou "fully.qualified.ClassName" + +INVALID_PROPERTY_VALUE = {1} n''est pas une valeur valide pour la propri\u00e9t\u00e9 "{0}" + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_PROPERTY = la propri\u00e9t\u00e9 ''{0}'' n''est pas prise en charge + +#{0} - package name. e.g.: "foo.bar" doesn't contain ObjectFactory.class or jaxb.index +BROKEN_CONTEXTPATH = "{0}" ne contient pas ObjectFactory.class ou jaxb.index + +NO_DEFAULT_CONSTRUCTOR_IN_INNER_CLASS = "{0}" est une classe interne et ne peut donc jamais comporter de constructeur sans argument par d\u00e9faut. Ajoutez ''static''. + +INVALID_TYPE_IN_MAP = La mappe contient un type incorrect diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_it.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_it.properties new file mode 100644 index 00000000..a2fa5a54 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_it.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not concatenated with any other string (written on a separate line). +ILLEGAL_ENTRY = voce non valida: "{0}". Le voci devono avere il formato "ClassName" o "OuterClass.InnerClass", non "ClassName.class" o "fully.qualified.ClassName" + +# {0} - class name, {1} - resource location e.g. error loading class "Foo" listed in foo/bar/jaxb.index, make sure that entries are accessable on CLASSPATH and of the form "ClassName" or "OuterClass.InnerClass", not "ClassName.class" or "fully.qualified.ClassName" +ERROR_LOADING_CLASS = errore di caricamento della classe "{0}" elencata in {1}. Assicurarsi che le voci siano accessibili su CLASSPATH e che abbiano il formato "ClassName" o "OuterClass.InnerClass", non "ClassName.class" o "fully.qualified.ClassName" + +INVALID_PROPERTY_VALUE = {1} non \u00e8 un valore valido per la propriet\u00e0 "{0}" + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_PROPERTY = propriet\u00e0 "{0}" non supportata + +#{0} - package name. e.g.: "foo.bar" doesn't contain ObjectFactory.class or jaxb.index +BROKEN_CONTEXTPATH = "{0}" non contiene ObjectFactory.class o jaxb.index + +NO_DEFAULT_CONSTRUCTOR_IN_INNER_CLASS = "{0}" \u00e8 una classe interna e pertanto non pu\u00f2 mai avere un costruttore senza argomenti predefinito. Aggiungere ''static''. + +INVALID_TYPE_IN_MAP = La mappa contiene un tipo errato diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_ja.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_ja.properties new file mode 100644 index 00000000..24c35aad --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_ja.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not concatenated with any other string (written on a separate line). +ILLEGAL_ENTRY = \u4e0d\u6b63\u306a\u30a8\u30f3\u30c8\u30ea: "{0}"\u3002\u30a8\u30f3\u30c8\u30ea\u306f\u3001"ClassName.class"\u307e\u305f\u306f"fully.qualified.ClassName"\u3067\u306f\u306a\u304f\u3001"ClassName"\u307e\u305f\u306f"OuterClass.InnerClass"\u306e\u5f62\u5f0f\u306b\u3059\u308b\u5fc5\u8981\u304c\u3042\u308a\u307e\u3059 + +# {0} - class name, {1} - resource location e.g. error loading class "Foo" listed in foo/bar/jaxb.index, make sure that entries are accessable on CLASSPATH and of the form "ClassName" or "OuterClass.InnerClass", not "ClassName.class" or "fully.qualified.ClassName" +ERROR_LOADING_CLASS = {1}\u306b\u30ea\u30b9\u30c8\u3055\u308c\u3066\u3044\u308b\u30af\u30e9\u30b9"{0}"\u306e\u30ed\u30fc\u30c9\u4e2d\u306b\u30a8\u30e9\u30fc\u304c\u767a\u751f\u3057\u307e\u3057\u305f\u3002\u30a8\u30f3\u30c8\u30ea\u304cCLASSPATH\u4e0a\u3067\u30a2\u30af\u30bb\u30b9\u53ef\u80fd\u3067\u3042\u308a\u3001"ClassName.class"\u307e\u305f\u306f"fully.qualified.ClassName"\u3067\u306f\u306a\u304f\u3001"ClassName"\u307e\u305f\u306f"OuterClass.InnerClass"\u306e\u5f62\u5f0f\u306b\u3059\u308b\u5fc5\u8981\u304c\u3042\u308a\u307e\u3059 + +INVALID_PROPERTY_VALUE = {1}\u306f\u30d7\u30ed\u30d1\u30c6\u30a3"{0}"\u306b\u5bfe\u3057\u3066\u7121\u52b9\u306a\u5024\u3067\u3059 + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_PROPERTY = \u30d7\u30ed\u30d1\u30c6\u30a3"{0}"\u306f\u30b5\u30dd\u30fc\u30c8\u3055\u308c\u3066\u3044\u307e\u305b\u3093 + +#{0} - package name. e.g.: "foo.bar" doesn't contain ObjectFactory.class or jaxb.index +BROKEN_CONTEXTPATH = "{0}"\u306b\u306fObjectFactory.class\u307e\u305f\u306fjaxb.index\u304c\u542b\u307e\u308c\u3066\u3044\u307e\u305b\u3093 + +NO_DEFAULT_CONSTRUCTOR_IN_INNER_CLASS = "{0}"\u306f\u5185\u90e8\u30af\u30e9\u30b9\u3067\u3042\u308b\u305f\u3081\u3001\u5f15\u6570\u306a\u3057\u306e\u30c7\u30d5\u30a9\u30eb\u30c8\u30fb\u30b3\u30f3\u30c8\u30e9\u30af\u30bf\u3092\u6301\u3064\u3053\u3068\u306f\u3067\u304d\u307e\u305b\u3093\u3002''static''\u3092\u8ffd\u52a0\u3057\u3066\u304f\u3060\u3055\u3044\u3002 + +INVALID_TYPE_IN_MAP = \u30de\u30c3\u30d7\u306b\u4e0d\u6b63\u306a\u30bf\u30a4\u30d7\u304c\u542b\u307e\u308c\u3066\u3044\u307e\u3059 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_ko.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_ko.properties new file mode 100644 index 00000000..86f69a70 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_ko.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not concatenated with any other string (written on a separate line). +ILLEGAL_ENTRY = \uc798\ubabb\ub41c \ud56d\ubaa9: "{0}". \ud56d\ubaa9\uc740 "ClassName.class" \ub610\ub294 "fully.qualified.ClassName" \ud615\uc2dd\uc774 \uc544\ub2cc "ClassName" \ub610\ub294 "OuterClass.InnerClass" \ud615\uc2dd\uc774\uc5b4\uc57c \ud569\ub2c8\ub2e4. + +# {0} - class name, {1} - resource location e.g. error loading class "Foo" listed in foo/bar/jaxb.index, make sure that entries are accessable on CLASSPATH and of the form "ClassName" or "OuterClass.InnerClass", not "ClassName.class" or "fully.qualified.ClassName" +ERROR_LOADING_CLASS = {1}\uc5d0 \ub098\uc5f4\ub41c "{0}" \ud074\ub798\uc2a4\ub97c \ub85c\ub4dc\ud558\ub294 \uc911 \uc624\ub958\uac00 \ubc1c\uc0dd\ud588\uc2b5\ub2c8\ub2e4. CLASSPATH\uc5d0\uc11c \ud56d\ubaa9\uc5d0 \uc561\uc138\uc2a4\ud560 \uc218 \uc788\uc73c\uba70 \ud56d\ubaa9\uc774 "ClassName.class" \ub610\ub294 "fully.qualified.ClassName" \ud615\uc2dd\uc774 \uc544\ub2cc "ClassName" \ub610\ub294 "OuterClass.InnerClass" \ud615\uc2dd\uc778\uc9c0 \ud655\uc778\ud558\uc2ed\uc2dc\uc624. + +INVALID_PROPERTY_VALUE = {1}\uc740(\ub294) "{0}" \uc18d\uc131\uc5d0 \ub300\ud574 \uc801\ud569\ud55c \uac12\uc774 \uc544\ub2d9\ub2c8\ub2e4. + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_PROPERTY = "{0}" \uc18d\uc131\uc740 \uc9c0\uc6d0\ub418\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. + +#{0} - package name. e.g.: "foo.bar" doesn't contain ObjectFactory.class or jaxb.index +BROKEN_CONTEXTPATH = "{0}"\uc5d0 ObjectFactory.class \ub610\ub294 jaxb.index\uac00 \ud3ec\ud568\ub418\uc5b4 \uc788\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. + +NO_DEFAULT_CONSTRUCTOR_IN_INNER_CLASS = "{0}"\uc740(\ub294) \ub0b4\ubd80 \ud074\ub798\uc2a4\uc774\ubbc0\ub85c \uc778\uc218\uac00 \uc5c6\ub294 \uae30\ubcf8 \uc0dd\uc131\uc790\ub97c \ud3ec\ud568\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. ''static''\uc744 \ucd94\uac00\ud558\uc2ed\uc2dc\uc624. + +INVALID_TYPE_IN_MAP = \ub9f5\uc5d0 \uc798\ubabb\ub41c \uc720\ud615\uc774 \ud3ec\ud568\ub418\uc5b4 \uc788\uc2b5\ub2c8\ub2e4. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_pt_BR.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_pt_BR.properties new file mode 100644 index 00000000..cfe24f5a --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_pt_BR.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not concatenated with any other string (written on a separate line). +ILLEGAL_ENTRY = entrada inv\u00e1lida: "{0}"; as entradas devem estar no formato "ClassName" ou "OuterClass.InnerClass", n\u00e3o no formato "ClassName.class" ou "fully.qualified.ClassName" + +# {0} - class name, {1} - resource location e.g. error loading class "Foo" listed in foo/bar/jaxb.index, make sure that entries are accessable on CLASSPATH and of the form "ClassName" or "OuterClass.InnerClass", not "ClassName.class" or "fully.qualified.ClassName" +ERROR_LOADING_CLASS = erro ao carregar a classe "{0}" listada em {1}; certifique-se de que as entradas n\u00e3o sejam acessadas no CLASSPATH e no formato "ClassName" ou "OuterClass.InnerClass", n\u00e3o no formato "ClassName.class" ou "fully.qualified.ClassName" + +INVALID_PROPERTY_VALUE = {1} n\u00e3o \u00e9 um valor v\u00e1lido para a propriedade "{0}" + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_PROPERTY = a propriedade "{0}" n\u00e3o \u00e9 suportada + +#{0} - package name. e.g.: "foo.bar" doesn't contain ObjectFactory.class or jaxb.index +BROKEN_CONTEXTPATH = "{0}" n\u00e3o cont\u00e9m ObjectFactory.class ou jaxb.index + +NO_DEFAULT_CONSTRUCTOR_IN_INNER_CLASS = "{0}" \u00e9 uma classe interna e, portanto, nunca pode ter um construtor no-argument default. Adicione ''static''. + +INVALID_TYPE_IN_MAP = O mapa cont\u00e9m um tipo incorreto diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_zh_CN.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_zh_CN.properties new file mode 100644 index 00000000..a8e0fd73 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_zh_CN.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not concatenated with any other string (written on a separate line). +ILLEGAL_ENTRY = \u975e\u6cd5\u6761\u76ee: "{0}", \u6761\u76ee\u7684\u683c\u5f0f\u5e94\u4e3a "ClassName" \u6216 "OuterClass.InnerClass", \u800c\u4e0d\u662f "ClassName.class" \u6216 "fully.qualified.ClassName" + +# {0} - class name, {1} - resource location e.g. error loading class "Foo" listed in foo/bar/jaxb.index, make sure that entries are accessable on CLASSPATH and of the form "ClassName" or "OuterClass.InnerClass", not "ClassName.class" or "fully.qualified.ClassName" +ERROR_LOADING_CLASS = \u52a0\u8f7d{1}\u4e2d\u5217\u51fa\u7684\u7c7b "{0}" \u65f6\u51fa\u9519, \u8bf7\u786e\u4fdd\u6761\u76ee\u53ef\u5728 CLASSPATH \u4e2d\u8bbf\u95ee\u5e76\u4e14\u683c\u5f0f\u4e3a "ClassName" \u6216 "OuterClass.InnerClass", \u800c\u4e0d\u662f "ClassName.class" \u6216 "fully.qualified.ClassName" + +INVALID_PROPERTY_VALUE = {1}\u4e0d\u662f\u5c5e\u6027 "{0}" \u7684\u6709\u6548\u503c + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_PROPERTY = \u4e0d\u652f\u6301\u5c5e\u6027 "{0}" + +#{0} - package name. e.g.: "foo.bar" doesn't contain ObjectFactory.class or jaxb.index +BROKEN_CONTEXTPATH = "{0}" \u4e0d\u5305\u542b ObjectFactory.class \u6216 jaxb.index + +NO_DEFAULT_CONSTRUCTOR_IN_INNER_CLASS = "{0}" \u662f\u5185\u90e8\u7c7b, \u56e0\u6b64\u7edd\u4e0d\u80fd\u5177\u6709\u9ed8\u8ba4\u65e0\u53c2\u6570\u6784\u9020\u5668\u3002\u8bf7\u6dfb\u52a0 ''\u9759\u6001''\u3002 + +INVALID_TYPE_IN_MAP = \u6620\u5c04\u5305\u542b\u9519\u8bef\u7c7b\u578b diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_zh_TW.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_zh_TW.properties new file mode 100644 index 00000000..954fafe7 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/Messages_zh_TW.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not concatenated with any other string (written on a separate line). +ILLEGAL_ENTRY = \u7121\u6548\u7684\u9805\u76ee: "{0}", \u9805\u76ee\u7684\u683c\u5f0f\u61c9\u70ba "ClassName" \u6216 "OuterClass.InnerClass", \u800c\u975e "ClassName.class" \u6216 "fully.qualified.ClassName" + +# {0} - class name, {1} - resource location e.g. error loading class "Foo" listed in foo/bar/jaxb.index, make sure that entries are accessable on CLASSPATH and of the form "ClassName" or "OuterClass.InnerClass", not "ClassName.class" or "fully.qualified.ClassName" +ERROR_LOADING_CLASS = \u8f09\u5165 {1} \u4e2d\u5217\u51fa\u7684\u985e\u5225 "{0}" \u6642\u767c\u751f\u932f\u8aa4, \u8acb\u78ba\u5b9a\u53ef\u5728\u985e\u5225\u8def\u5f91\u4e2d\u5b58\u53d6\u8a72\u9805\u76ee, \u4e14\u683c\u5f0f\u70ba "ClassName" \u6216 "OuterClass.InnerClass", \u800c\u975e "ClassName.class" \u6216 "fully.qualified.ClassName" + +INVALID_PROPERTY_VALUE = {1} \u4e0d\u662f\u7279\u6027 "{0}" \u7684\u6709\u6548\u503c + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_PROPERTY = \u4e0d\u652f\u63f4\u7279\u6027 "{0}" + +#{0} - package name. e.g.: "foo.bar" doesn't contain ObjectFactory.class or jaxb.index +BROKEN_CONTEXTPATH = "{0}" \u672a\u5305\u542b ObjectFactory.class \u6216 jaxb.index + +NO_DEFAULT_CONSTRUCTOR_IN_INNER_CLASS = "{0}" \u662f\u5167\u90e8\u985e\u5225, \u56e0\u6b64\u6c38\u9060\u4e0d\u80fd\u6709\u9810\u8a2d\u7684\u7121\u5f15\u6578\u5efa\u69cb\u5b50. \u8acb\u65b0\u589e ''static''. + +INVALID_TYPE_IN_MAP = \u5c0d\u61c9\u5305\u542b\u932f\u8aa4\u7684\u985e\u578b diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/TODO.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/TODO.class new file mode 100644 index 00000000..4d148b56 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/TODO.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/WellKnownNamespace.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/WellKnownNamespace.class new file mode 100644 index 00000000..343955a9 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/WellKnownNamespace.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/AbstractInlineAnnotationReaderImpl.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/AbstractInlineAnnotationReaderImpl.class new file mode 100644 index 00000000..a8a8b337 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/AbstractInlineAnnotationReaderImpl.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/AnnotationReader.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/AnnotationReader.class new file mode 100644 index 00000000..5f47ed2c Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/AnnotationReader.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/AnnotationSource.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/AnnotationSource.class new file mode 100644 index 00000000..71297e0e Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/AnnotationSource.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/ClassLocatable.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/ClassLocatable.class new file mode 100644 index 00000000..8d987c78 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/ClassLocatable.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/FieldLocatable.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/FieldLocatable.class new file mode 100644 index 00000000..5aef3f54 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/FieldLocatable.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Init.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Init.class new file mode 100644 index 00000000..5332400d Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Init.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Locatable.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Locatable.class new file mode 100644 index 00000000..2f6a76ce Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Locatable.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/LocatableAnnotation.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/LocatableAnnotation.class new file mode 100644 index 00000000..59215065 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/LocatableAnnotation.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages.class new file mode 100644 index 00000000..d3c4fe05 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages.properties new file mode 100644 index 00000000..44cfc00e --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages.properties @@ -0,0 +1,16 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +DUPLICATE_ANNOTATIONS = \ + Annotation "{0}" is present on both "{1}" and "{2}" + +CLASS_NOT_FOUND = \ + \nError occured while invoking reflection on target classes. Make sure all referenced classes are on classpath: {0} \ + \nException: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_de.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_de.properties new file mode 100644 index 00000000..3d828c32 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_de.properties @@ -0,0 +1,13 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +DUPLICATE_ANNOTATIONS = Annotation "{0}" ist sowohl f\u00fcr "{1}" als auch f\u00fcr "{2}" vorhanden + +CLASS_NOT_FOUND = \nFehler beim Aufruf von Reflektion auf Zielklassen. Stellen Sie sicher, dass alle referenzierten Klassen im Classpath vorhanden sind: {0} \nAusnahme: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_es.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_es.properties new file mode 100644 index 00000000..7af7f281 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_es.properties @@ -0,0 +1,13 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +DUPLICATE_ANNOTATIONS = La anotaci\u00f3n "{0}" se encuentra en "{1}" y en "{2}" + +CLASS_NOT_FOUND = \nSe ha producido un error al llamar a la reflexi\u00f3n en las clases de destino. Aseg\u00farese de que todas las clases a las que se hace referencia se encuentran en la classpath: {0} \nExcepci\u00f3n: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_fr.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_fr.properties new file mode 100644 index 00000000..fbb35dd6 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_fr.properties @@ -0,0 +1,13 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +DUPLICATE_ANNOTATIONS = L''annotation "{0}" figure \u00e0 la fois sur "{1}" et "{2}" + +CLASS_NOT_FOUND = \nUne erreur s''est produite lors de l''appel de Reflection sur les classes cible. Assurez-vous que toutes les classes r\u00e9f\u00e9renc\u00e9es figurent sur le classpath {0} \nException : {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_it.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_it.properties new file mode 100644 index 00000000..7cb0522f --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_it.properties @@ -0,0 +1,13 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +DUPLICATE_ANNOTATIONS = L''annotazione "{0}" \u00e8 presente su "{1}" e su "{2}" + +CLASS_NOT_FOUND = \nSi \u00e8 verificato un errore durante il richiamo della riflessione sulle classi di destinazione. Assicurarsi che tutte le classi di riferimento si trovino sul classpath: {0} \nEccezione: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_ja.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_ja.properties new file mode 100644 index 00000000..07c44e3a --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_ja.properties @@ -0,0 +1,13 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +DUPLICATE_ANNOTATIONS = \u6ce8\u91c8"{0}"\u306f"{1}"\u3068"{2}"\u306e\u4e21\u65b9\u306b\u5b58\u5728\u3057\u307e\u3059 + +CLASS_NOT_FOUND = \n\u30bf\u30fc\u30b2\u30c3\u30c8\u30fb\u30af\u30e9\u30b9\u3067\u306e\u30ea\u30d5\u30ec\u30af\u30b7\u30e7\u30f3\u306e\u547c\u51fa\u3057\u4e2d\u306b\u30a8\u30e9\u30fc\u304c\u767a\u751f\u3057\u307e\u3057\u305f\u3002\u53c2\u7167\u3055\u308c\u308b\u3059\u3079\u3066\u306e\u30af\u30e9\u30b9\u304c\u30af\u30e9\u30b9\u30d1\u30b9\u306b\u5b58\u5728\u3057\u3066\u3044\u308b\u3053\u3068\u3092\u78ba\u8a8d\u3057\u3066\u304f\u3060\u3055\u3044: {0}\n\u4f8b\u5916: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_ko.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_ko.properties new file mode 100644 index 00000000..67a04669 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_ko.properties @@ -0,0 +1,13 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +DUPLICATE_ANNOTATIONS = "{0}" \uc8fc\uc11d\uc774 "{1}"\uacfc(\uc640) "{2}", \ub450 \uc704\uce58\uc5d0 \uc788\uc2b5\ub2c8\ub2e4. + +CLASS_NOT_FOUND = \n\ub300\uc0c1 \ud074\ub798\uc2a4\uc5d0\uc11c \ub9ac\ud50c\ub809\uc158\uc744 \ud638\ucd9c\ud558\ub294 \uc911 \uc624\ub958\uac00 \ubc1c\uc0dd\ud588\uc2b5\ub2c8\ub2e4. \ucc38\uc870\ub41c \ubaa8\ub4e0 \ud074\ub798\uc2a4\uac00 \ud074\ub798\uc2a4 \uacbd\ub85c {0}\uc5d0 \uc788\ub294\uc9c0 \ud655\uc778\ud558\uc2ed\uc2dc\uc624. \n\uc608\uc678 \uc0ac\ud56d: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_pt_BR.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_pt_BR.properties new file mode 100644 index 00000000..fc14fbdb --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_pt_BR.properties @@ -0,0 +1,13 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +DUPLICATE_ANNOTATIONS = A anota\u00e7\u00e3o "{0}" est\u00e1 presente em "{1}" e "{2}" + +CLASS_NOT_FOUND = \nOcorreu um erro ao chamar a reflex\u00e3o nas classes do alvo. Certifique-se de que todas as classes mencionadas estejam no classpath: {0} \nExce\u00e7\u00e3o: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_zh_CN.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_zh_CN.properties new file mode 100644 index 00000000..12e29b3e --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_zh_CN.properties @@ -0,0 +1,13 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +DUPLICATE_ANNOTATIONS = "{1}" \u548c "{2}" \u4e0a\u90fd\u5b58\u5728\u6ce8\u91ca "{0}" + +CLASS_NOT_FOUND = \n\u5728\u76ee\u6807\u7c7b\u4e0a\u8c03\u7528\u53cd\u5c04\u65f6\u51fa\u9519\u3002\u8bf7\u786e\u4fdd\u6240\u6709\u5f15\u7528\u7684\u7c7b\u90fd\u4f4d\u4e8e\u7c7b\u8def\u5f84\u4e0a: {0} \n\u5f02\u5e38\u9519\u8bef: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_zh_TW.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_zh_TW.properties new file mode 100644 index 00000000..4efc5ba6 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Messages_zh_TW.properties @@ -0,0 +1,13 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +DUPLICATE_ANNOTATIONS = "{1}" \u8207 "{2}"\u90fd\u6709\u8a3b\u89e3 "{0}" + +CLASS_NOT_FOUND = \n\u5728\u76ee\u6a19\u985e\u5225\u4e0a\u547c\u53eb\u53cd\u6620\u6642\u767c\u751f\u932f\u8aa4. \u8acb\u78ba\u5b9a\u6240\u6709\u53c3\u7167\u7684\u985e\u5225\u5747\u4f4d\u65bc\u985e\u5225\u8def\u5f91: {0} \n\u7570\u5e38\u72c0\u6cc1: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/MethodLocatable.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/MethodLocatable.class new file mode 100644 index 00000000..dc5bea93 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/MethodLocatable.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Quick.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Quick.class new file mode 100644 index 00000000..b9148647 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/Quick.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/RuntimeAnnotationReader.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/RuntimeAnnotationReader.class new file mode 100644 index 00000000..e7e7c646 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/RuntimeAnnotationReader.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/RuntimeInlineAnnotationReader.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/RuntimeInlineAnnotationReader.class new file mode 100644 index 00000000..47b07fd1 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/RuntimeInlineAnnotationReader.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/SecureLoader$1.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/SecureLoader$1.class new file mode 100644 index 00000000..aa7eac2e Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/SecureLoader$1.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/SecureLoader$2.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/SecureLoader$2.class new file mode 100644 index 00000000..aeefd435 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/SecureLoader$2.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/SecureLoader$3.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/SecureLoader$3.class new file mode 100644 index 00000000..e5302162 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/SecureLoader$3.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/SecureLoader.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/SecureLoader.class new file mode 100644 index 00000000..49ca9dcb Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/SecureLoader.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/XmlAttributeQuick.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/XmlAttributeQuick.class new file mode 100644 index 00000000..898d7856 Binary files 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b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/XmlElementRefQuick.class new file mode 100644 index 00000000..f41fc7bb Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/XmlElementRefQuick.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/XmlElementRefsQuick.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/XmlElementRefsQuick.class new file mode 100644 index 00000000..cbd57eb7 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/XmlElementRefsQuick.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/XmlEnumQuick.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/annotation/XmlEnumQuick.class new file mode 100644 index 00000000..72714528 Binary files /dev/null and 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b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages.class new file mode 100644 index 00000000..7db08879 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages.properties new file mode 100644 index 00000000..7383001d --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages.properties @@ -0,0 +1,198 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ID_MUST_BE_STRING = \ + Property "{0}" has an XmlID annotation but its type is not String. + +# {0} - field or field accessor (getter/setter) e.g.: foo.Bar#field has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement OR foo.Bar#getField() has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement +MUTUALLY_EXCLUSIVE_ANNOTATIONS = \ + {0} has mutually exclusive annotations @{1} and @{2} + +DUPLICATE_ANNOTATIONS = \ + @{0} annotation is found on two places; one would be suffice. + +# {0} - class name. e.g.: java.lang.StackTraceElement does not have a no-arg default constructor. +NO_DEFAULT_CONSTRUCTOR = \ + {0} does not have a no-arg default constructor. + +CANT_HANDLE_INTERFACE = \ + {0} is an interface, and JAXB can''t handle interfaces. + +CANT_HANDLE_INNER_CLASS = \ + {0} is a non-static inner class, and JAXB can''t handle those. + +ANNOTATION_ON_WRONG_METHOD = \ + JAXB annotation is placed on a method that is not a JAXB property + +GETTER_SETTER_INCOMPATIBLE_TYPE = \ + The type of the getter is {0} but that of the setter is {1}. They have to be the same. + +DUPLICATE_ENTRY_IN_PROP_ORDER = \ + Property "{0}" appears more than once in the @XmlType.propOrder + +DUPLICATE_PROPERTIES = \ + There are two properties named "{0}" + +XML_ELEMENT_MAPPING_ON_NON_IXMLELEMENT_METHOD = \ + The {0} method has @XmlElementMapping on it, but it doesn''t return a sub-type of JAXBElement. + +# {0} - (xsd) type name. e.g. ns:MyType is not bound to a complex type, and therefore illegal as the scope. +SCOPE_IS_NOT_COMPLEXTYPE = \ + {0} is not bound to a complex type, and therefore illegal as the scope. + +CONFLICTING_XML_ELEMENT_MAPPING = \ + The element name '{'{0}'}'{1} has more than one mapping. + +REFERENCE_TO_NON_ELEMENT = \ + Property {0} is annotated with @XmlReference but doesn''t refer to an element. + +NON_EXISTENT_ELEMENT_MAPPING = \ + No element mapping exists for "{0}":"{1}" + +TWO_ATTRIBUTE_WILDCARDS = \ + {0} has two properties with the @XmlAnyAttribute annotation. + +SUPER_CLASS_HAS_WILDCARD = \ + Can''t have @XmlAnyAttribute when a base class has it already. + +INVALID_ATTRIBUTE_WILDCARD_TYPE = \ + @XmlAnyAttribute is placed on a property whose type is {0} but it needs to be assignable to java.util.Map. + +PROPERTY_MISSING_FROM_ORDER = \ + Property {0} is present but not specified in @XmlType.propOrder + +PROPERTY_ORDER_CONTAINS_UNUSED_ENTRY = \ + Property {0} appears in @XmlType.propOrder, but no such property exists. Maybe you meant {1}? + +# {1} - (local) type name e.g.: '#foo' is not a valid value for 'NCName' +INVALID_XML_ENUM_VALUE = \ + "{0}" is not a valid value for {1}. + +NO_IMAGE_WRITER = \ + No javax.imageio.ImageWriter is available for the specified MIME type "{0}" + +ILLEGAL_MIME_TYPE = \ + "{0}" is not a valid MIME type: {1} + +ILLEGAL_ANNOTATION = \ + {0} annotation cannot be placed here + +MULTIPLE_VALUE_PROPERTY = \ + @XmlValue is only allowed one per class, but two properties are annotated with @XmlValue. + +XMLVALUE_IN_DERIVED_TYPE = \ + @XmlValue is not allowed on a class that derives another class. + +ELEMENT_AND_VALUE_PROPERTY = \ + If a class has @XmlElement property, it cannot have @XmlValue property. + +CONFLICTING_XML_TYPE_MAPPING = \ + Two classes have the same XML type name "{0}". Use @XmlType.name and @XmlType.namespace to \ + assign different names to them. + +SIMPLE_TYPE_IS_REQUIRED = \ + @XmlAttribute/@XmlValue need to reference a Java type that maps to text in XML. + +PROPERTY_COLLISION = \ + Class has two properties of the same name "{0}" + +INVALID_IDREF = \ + XmlIDREF property is referencing a type "{0}" that doesn''t have an XmlID property. + +INVALID_XML_ELEMENT_REF = \ + Invalid @XmlElementRef : Type "{0}" or any of it's subclasses are not known to this context. + +NO_XML_ELEMENT_DECL = \ + There''s no ObjectFactory with an @XmlElementDecl for the element '{'{0}'}'{1}. + +XML_ELEMENT_WRAPPER_ON_NON_COLLECTION = \ + @XmlElementWrapper is only allowed on a collection property but "{0}" is not a collection property. + +ANNOTATION_NOT_ALLOWED = \ + {0} annotation is not allowed on this kind of property. + +XMLLIST_NEEDS_SIMPLETYPE = \ + {0} maps to a structured XML fragment (AKA complex type), and therefore incompatible with @XmlList. + +XMLLIST_ON_SINGLE_PROPERTY = \ + @XmlList cannot be placed on a single-value property + +NO_FACTORY_METHOD = \ + Factory class "{0}" does not have static zero args factory method "{1}". + +FACTORY_CLASS_NEEDS_FACTORY_METHOD = \ + XmlType has not defined a factory method for Factory class "{0}". + +MISSING_JAXB_PROPERTIES = \ + Package "{0}" is missing jaxb.properties file. Have you copied this from the generated source directory or include it in the classpath? + +TRANSIENT_FIELD_NOT_BINDABLE = \ + Transient field "{0}" cannot have any JAXB annotations. + +THERE_MUST_BE_VALUE_IN_XMLVALUE = \ + Object must have some value in its @XmlValue field: {0} + +INCOMPATIBLE_API_VERSION = \ + JAXB 2.1 API jar is being loaded (from {0}), but this RI (from {1}) requires JAXB 2.2 API jar. + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +INCOMPATIBLE_API_VERSION_MUSTANG = \ + JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from {1}) needs 2.2 API. \ + Use the endorsed directory mechanism to place jaxb-api.jar in the bootstrap classloader. \ + (See http://java.sun.com/j2se/1.6.0/docs/guide/standards/) + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +RUNNING_WITH_1_0_RUNTIME = \ + You are trying to run JAXB 2.0 runtime (from {1}) but you have old JAXB 1.0 runtime earlier \ + in the classpath (at {0}) Please remove the JAXB 1.0 runtime for 2.0 runtime to work correctly. + +UNMATCHABLE_ADAPTER = \ + Adapter {0} is not applicable to the field type {1}. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_INSTANTIATION_EXCEPTION = \ + Unable to create instance of AccessorFactory, {0} for class {1}. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_ACCESS_EXCEPTION = \ + Unable to access instance of AccessorFactory, {0} for class {1}. + +CUSTOM_ACCESSORFACTORY_PROPERTY_ERROR = \ + Custom AccessorFactory, {0}, is reporting an error accessing a property. {1} + +CUSTOM_ACCESSORFACTORY_FIELD_ERROR = \ + Custom AccessorFactory, {0}, is reporting an error accessing a field. {1} + +ANONYMOUS_ARRAY_ITEM = \ + {0} is used as an array component type, so it cannot be anonymous. + +XMLGREGORIANCALENDAR_INVALID = \ + Invalid set of fields set for XMLGregorianCalendar type {0}. + +XMLGREGORIANCALENDAR_SEC = \ + Seconds not set. + +XMLGREGORIANCALENDAR_MIN = \ + Minutes not set. + +XMLGREGORIANCALENDAR_HR = \ + Hour not set. + +XMLGREGORIANCALENDAR_DAY = \ + Day not set. + +XMLGREGORIANCALENDAR_MONTH = \ + Month not set. + +XMLGREGORIANCALENDAR_YEAR = \ + Year not set. + +XMLGREGORIANCALENDAR_TIMEZONE = \ + Timezone not set. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_de.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_de.properties new file mode 100644 index 00000000..b0c427bb --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_de.properties @@ -0,0 +1,136 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +ID_MUST_BE_STRING = Eigenschaft "{0}" enth\u00e4lt eine XmlID-Annotation, der Typ ist jedoch nicht "String". + +# {0} - field or field accessor (getter/setter) e.g.: foo.Bar#field has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement OR foo.Bar#getField() has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement +MUTUALLY_EXCLUSIVE_ANNOTATIONS = {0} enth\u00e4lt sich gegenseitig ausschlie\u00dfende Annotationen @{1} und @{2} + +DUPLICATE_ANNOTATIONS = @{0}-Annotation wird an zwei Stellen gefunden, eine Stelle w\u00fcrde ausreichen. + +# {0} - class name. e.g.: java.lang.StackTraceElement does not have a no-arg default constructor. +NO_DEFAULT_CONSTRUCTOR = {0} enth\u00e4lt keinen "no-arg"-Standardkonstruktor. + +CANT_HANDLE_INTERFACE = {0} ist eine Schnittstelle, und JAXB kann keine Schnittstellen verarbeiten. + +CANT_HANDLE_INNER_CLASS = {0} ist eine nicht-statische innere Klasse, und JAXB kann diese nicht verarbeiten. + +ANNOTATION_ON_WRONG_METHOD = JAXB-Annotation wurde auf eine Methode gesetzt, die keine JAXB-Eigenschaft ist + +GETTER_SETTER_INCOMPATIBLE_TYPE = Der Getter-Typ ist {0}, der Setter-Typ hingegen {1}. Sie m\u00fcssen identisch sein. + +DUPLICATE_ENTRY_IN_PROP_ORDER = Eigenschaft "{0}" ist mehr als einmal in @XmlType.propOrder enthalten + +DUPLICATE_PROPERTIES = Es sind zwei Eigenschaften namens "{0}" vorhanden + +XML_ELEMENT_MAPPING_ON_NON_IXMLELEMENT_METHOD = Die {0}-Methode enth\u00e4lt @XmlElementMapping, gibt jedoch keinen Subtyp von JAXBElement zur\u00fcck. + +# {0} - (xsd) type name. e.g. ns:MyType is not bound to a complex type, and therefore illegal as the scope. +SCOPE_IS_NOT_COMPLEXTYPE = {0} ist nicht an einen komplexen Typ gebunden und somit als Geltungsbereich unzul\u00e4ssig. + +CONFLICTING_XML_ELEMENT_MAPPING = Der Elementname '{'{0}'}'{1} enth\u00e4lt mehr als eine Zuordnung. + +REFERENCE_TO_NON_ELEMENT = Eigenschaft {0} ist mit @XmlReference-Annotation versehen, referenziert jedoch kein Element. + +NON_EXISTENT_ELEMENT_MAPPING = Es ist keine Elementzuordnung f\u00fcr "{0}" vorhanden:"{1}" + +TWO_ATTRIBUTE_WILDCARDS = {0} enth\u00e4lt zwei Eigenschaften mit der @XmlAnyAttribute-Annotation. + +SUPER_CLASS_HAS_WILDCARD = @XmlAnyAttribute ist nicht zul\u00e4ssig, wenn es bereits in einer Basisklasse vorhanden ist. + +INVALID_ATTRIBUTE_WILDCARD_TYPE = @XmlAnyAttribute ist auf eine Eigenschaft gesetzt, deren Typ {0} ist, muss jedoch java.util.Map zugeordnet werden k\u00f6nnen. + +PROPERTY_MISSING_FROM_ORDER = Eigenschaft {0} ist vorhanden, jedoch in @XmlType.propOrder nicht angegeben + +PROPERTY_ORDER_CONTAINS_UNUSED_ENTRY = Eigenschaft {0} ist in @XmlType.propOrder enthalten, eine derartige Eigenschaft ist jedoch nicht vorhanden. Haben Sie {1} gemeint? + +# {1} - (local) type name e.g.: '#foo' is not a valid value for 'NCName' +INVALID_XML_ENUM_VALUE = "{0}" ist kein g\u00fcltiger Wert f\u00fcr {1}. + +NO_IMAGE_WRITER = Es ist kein javax.imageio.ImageWriter f\u00fcr den angegebenen MIME-Typ "{0}" verf\u00fcgbar + +ILLEGAL_MIME_TYPE = "{0}" ist kein g\u00fcltiger MIME-Typ: {1} + +ILLEGAL_ANNOTATION = {0}-Annotation darf nicht hier stehen + +MULTIPLE_VALUE_PROPERTY = Es ist nur ein @XmlValue pro Klasse zul\u00e4ssig, zwei Eigenschaften enthalten jedoch die Annotation @XmlValue. + +XMLVALUE_IN_DERIVED_TYPE = @XmlValue ist bei einer Klasse nicht zul\u00e4ssig, die eine andere Klasse ableitet. + +ELEMENT_AND_VALUE_PROPERTY = Wenn eine Klasse die Eigenschaft @XmlElement enth\u00e4lt, kann sie die Eigenschaft @XmlValue nicht enthalten. + +CONFLICTING_XML_TYPE_MAPPING = Zwei Klassen haben denselben XML-Typnamen"{0}". Verwenden Sie @XmlType.name und @XmlType.namespace, um ihnen unterschiedliche Namen zuzuweisen. + +SIMPLE_TYPE_IS_REQUIRED = @XmlAttribute/@XmlValue muss einen Java-Typ referenzieren, der Text in XML zugeordnet ist. + +PROPERTY_COLLISION = Klasse enth\u00e4lt zwei Eigenschaften mit demselben Namen "{0}" + +INVALID_IDREF = XmlIDREF-Eigenschaft referenziert einen Typ "{0}", der keine XmlID-Eigenschaft enth\u00e4lt. + +INVALID_XML_ELEMENT_REF = Ung\u00fcltige @XmlElementRef: Typ "{0}" oder eine seiner Unterklassen sind in diesem Kontext nicht bekannt. + +NO_XML_ELEMENT_DECL = Es ist keine ObjectFactory mit @XmlElementDecl f\u00fcr das Element '{'{0}'}'{1} vorhanden. + +XML_ELEMENT_WRAPPER_ON_NON_COLLECTION = @XmlElementWrapper ist nur bei einer Collection-Eigenschaft zul\u00e4ssig, "{0}" ist jedoch keine Collection-Eigenschaft. + +ANNOTATION_NOT_ALLOWED = {0}-Annotation ist bei dieser Art von Eigenschaft nicht zul\u00e4ssig. + +XMLLIST_NEEDS_SIMPLETYPE = {0} ist einem strukturierten XML-Fragment (d.h. einem komplexen Typ) zugeordnet und deshalb nicht mit @XmlList kompatibel. + +XMLLIST_ON_SINGLE_PROPERTY = @XmlList kann nicht auf eine Einzelwerteigenschaft gesetzt werden + +NO_FACTORY_METHOD = Factory-Klasse "{0}" hat keine statische "zero-arguments" Factory-Methode "{1}". + +FACTORY_CLASS_NEEDS_FACTORY_METHOD = XmlType hat keine Factory-Methode f\u00fcr Factory-Klasse "{0}" definiert. + +MISSING_JAXB_PROPERTIES = In Package "{0}" fehlt die jaxb.properties-Datei. Haben Sie diese aus dem generierten Quellverzeichnis kopiert oder im Classpath aufgenommen? + +TRANSIENT_FIELD_NOT_BINDABLE = Transientes Feld "{0}" darf keine JAXB-Annotationen enthalten. + +THERE_MUST_BE_VALUE_IN_XMLVALUE = Objekt muss einen Wert im @XmlValue-Feld enthalten: {0} + +INCOMPATIBLE_API_VERSION = JAXB 2.1 API-JAR wird geladen (aus {0}), diese RI (aus {1}) erfordert jedoch JAXB 2.2 API-JAR. + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +INCOMPATIBLE_API_VERSION_MUSTANG = JAXB 2.1-API wird aus dem Bootstrap Classloader geladen, diese RI (aus {1}) erfordert jedoch 2.2-API. Verwenden Sie das "Endorsed"-Verzeichnisverfahren, um jaxb-api.jar in den Bootstrap Classloader zu setzen. (Siehe http://java.sun.com/j2se/1.6.0/docs/guide/standards/) + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +RUNNING_WITH_1_0_RUNTIME = Sie versuchen, JAXB 2.0 Runtime (aus {1}) auszuf\u00fchren, es ist jedoch an fr\u00fcherer Stelle im Classpath ein altes JAXB 1.0 Runtime (bei {0}) vorhanden. Entfernen Sie JAXB 1.0 Runtime, damit 2.0 Runtime ordnungsgem\u00e4\u00df ausgef\u00fchrt werden kann. + +UNMATCHABLE_ADAPTER = Adapter {0} ist f\u00fcr den Feldtyp {1} nicht anwendbar. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_INSTANTIATION_EXCEPTION = Instanz von AccessorFactory {0} f\u00fcr Klasse {1} kann nicht erstellt werden. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_ACCESS_EXCEPTION = Auf Instanz von AccessorFactory, {0}, f\u00fcr Klasse {1} kann nicht zugegriffen werden. + +CUSTOM_ACCESSORFACTORY_PROPERTY_ERROR = Benutzerdefinierte AccessorFactory, {0}, meldet einen Fehler beim Zugriff auf eine Eigenschaft. {1} + +CUSTOM_ACCESSORFACTORY_FIELD_ERROR = Benutzerdefinierte AccessorFactory, {0}, meldet einen Fehler beim Zugriff auf ein Feld. {1} + +ANONYMOUS_ARRAY_ITEM = {0} wird als Array-Komponententyp verwendet, kann also nicht anonym sein. + +XMLGREGORIANCALENDAR_INVALID = Ung\u00fcltige Gruppe von Feldern f\u00fcr XMLGregorianCalendar-Typ {0} festgelegt. + +XMLGREGORIANCALENDAR_SEC = Sekunden nicht festgelegt. + +XMLGREGORIANCALENDAR_MIN = Minuten nicht festgelegt. + +XMLGREGORIANCALENDAR_HR = Stunde nicht festgelegt. + +XMLGREGORIANCALENDAR_DAY = Tag nicht festgelegt. + +XMLGREGORIANCALENDAR_MONTH = Monat nicht festgelegt. + +XMLGREGORIANCALENDAR_YEAR = Jahr nicht festgelegt. + +XMLGREGORIANCALENDAR_TIMEZONE = Zeitzone nicht festgelegt. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_es.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_es.properties new file mode 100644 index 00000000..f8265874 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_es.properties @@ -0,0 +1,136 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +ID_MUST_BE_STRING = La propiedad "{0}" tiene una anotaci\u00f3n XmlID, pero no es del tipo Cadena. + +# {0} - field or field accessor (getter/setter) e.g.: foo.Bar#field has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement OR foo.Bar#getField() has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement +MUTUALLY_EXCLUSIVE_ANNOTATIONS = {0} posee las anotaciones que se excluyen mutuamente @{1} y @{2} + +DUPLICATE_ANNOTATIONS = La anotaci\u00f3n @{0} se encuentra en dos lugares. Uno deber\u00eda ser suficiente. + +# {0} - class name. e.g.: java.lang.StackTraceElement does not have a no-arg default constructor. +NO_DEFAULT_CONSTRUCTOR = {0} no tiene un constructor por defecto sin argumentos. + +CANT_HANDLE_INTERFACE = {0} es una interfaz y JAXB no puede manejar interfaces. + +CANT_HANDLE_INNER_CLASS = {0} es una clase interna no est\u00e1tica y JAXB no las puede manejar. + +ANNOTATION_ON_WRONG_METHOD = La anotaci\u00f3n JAXB est\u00e1 colocada en un m\u00e9todo que no es una propiedad de JAXB + +GETTER_SETTER_INCOMPATIBLE_TYPE = El tipo de getter es {0}, pero el de setter es {1}. Tienen que ser del mismo tipo. + +DUPLICATE_ENTRY_IN_PROP_ORDER = La propiedad "{0}" aparece m\u00e1s de una vez en @XmlType.propOrder + +DUPLICATE_PROPERTIES = Hay dos propiedades con el nombre "{0}" + +XML_ELEMENT_MAPPING_ON_NON_IXMLELEMENT_METHOD = El m\u00e9todo {0} incluye @XmlElementMapping, pero no devuelve un subtipo del elemento JAXB. + +# {0} - (xsd) type name. e.g. ns:MyType is not bound to a complex type, and therefore illegal as the scope. +SCOPE_IS_NOT_COMPLEXTYPE = {0} no est\u00e1 enlazado a un tipo complejo y, por lo tanto, no es v\u00e1lido, al igual que el \u00e1mbito. + +CONFLICTING_XML_ELEMENT_MAPPING = El nombre del elemento '{'{0}'}'{1} tiene m\u00e1s de una asignaci\u00f3n. + +REFERENCE_TO_NON_ELEMENT = La propiedad {0} est\u00e1 anotada con @XmlReference, pero no hace referencia a un elemento. + +NON_EXISTENT_ELEMENT_MAPPING = No existe ninguna asignaci\u00f3n de elemento para "{0}":"{1}" + +TWO_ATTRIBUTE_WILDCARDS = {0} posee dos propiedades con la anotaci\u00f3n @XmlAnyAttribute. + +SUPER_CLASS_HAS_WILDCARD = No puede tener @XmlAnyAttribute cuando una clase base ya lo tiene. + +INVALID_ATTRIBUTE_WILDCARD_TYPE = @XmlAnyAttribute est\u00e1 colocado en una propiedad de tipo {0}, pero es necesario que se pueda asignar a java.util.Map. + +PROPERTY_MISSING_FROM_ORDER = La propiedad {0} existe, pero no est\u00e1 especificada en @XmlType.propOrder + +PROPERTY_ORDER_CONTAINS_UNUSED_ENTRY = La propiedad {0} aparece en @XmlType.propOrder, pero no existe. Quiz\u00e1 quiso decir {1}. + +# {1} - (local) type name e.g.: '#foo' is not a valid value for 'NCName' +INVALID_XML_ENUM_VALUE = "{0}" no es un valor v\u00e1lido para {1}. + +NO_IMAGE_WRITER = No hay disponible ning\u00fan javax.imageio.ImageWriter para el tipo MIME especificado "{0}" + +ILLEGAL_MIME_TYPE = "{0}" no es un tipo MIME v\u00e1lido: {1} + +ILLEGAL_ANNOTATION = La anotaci\u00f3n {0} no se puede colocar aqu\u00ed + +MULTIPLE_VALUE_PROPERTY = S\u00f3lo se permite un @XmlValue por clase, pero hay dos propiedades anotadas con @XmlValue. + +XMLVALUE_IN_DERIVED_TYPE = @XmlValue no est\u00e1 permitido en una clase que se deriva de otra clase. + +ELEMENT_AND_VALUE_PROPERTY = Si una clase tiene la propiedad @XmlElement, no puede tener la propiedad @XmlValue. + +CONFLICTING_XML_TYPE_MAPPING = Hay dos clases que tienen el mismo nombre de tipo XML "{0}". Utilice @XmlType.name y @XmlType.namespace para asignarles nombres diferentes. + +SIMPLE_TYPE_IS_REQUIRED = @XmlAttribute/@XmlValue tienen que hacer referencia a un tipo Java que se asigne a texto en XML. + +PROPERTY_COLLISION = La clase tiene dos propiedades con el mismo nombre "{0}" + +INVALID_IDREF = La propiedad XmlIDREF hace referencia a un tipo "{0}" que no tiene una propiedad XmlID. + +INVALID_XML_ELEMENT_REF = @XmlElementRef no v\u00e1lido: el tipo "{0}" o alguna de sus subclases son desconocidos en este contexto. + +NO_XML_ELEMENT_DECL = No hay ning\u00fan ObjectFactory con @XmlElementDecl para el elemento '{'{0}'}'{1}. + +XML_ELEMENT_WRAPPER_ON_NON_COLLECTION = @XmlElementWrapper s\u00f3lo est\u00e1 permitido en una propiedad de recopilaci\u00f3n, pero "{0}" no es una propiedad de recopilaci\u00f3n. + +ANNOTATION_NOT_ALLOWED = La anotaci\u00f3n {0} no est\u00e1 permitida en este tipo de propiedad. + +XMLLIST_NEEDS_SIMPLETYPE = {0} se asigna a un fragmento XML estructurado (tambi\u00e9n conocido como tipo complejo) y, por lo tanto, es incompatible con @XmlList. + +XMLLIST_ON_SINGLE_PROPERTY = @XmlList no se puede colocar en una propiedad de un solo valor + +NO_FACTORY_METHOD = La clase de f\u00e1brica "{0}" no tiene un m\u00e9todo de f\u00e1brica sin argumentos est\u00e1tico "{1}". + +FACTORY_CLASS_NEEDS_FACTORY_METHOD = XmlType no tiene definido un m\u00e9todo de f\u00e1brica para la clase de f\u00e1brica "{0}". + +MISSING_JAXB_PROPERTIES = Falta el archivo jaxb.properties en el paquete "{0}". \u00bfLo ha copiado del directorio de origen generado o lo ha incluido en la classpath? + +TRANSIENT_FIELD_NOT_BINDABLE = El campo transitorio "{0}" no puede tener ninguna anotaci\u00f3n de JAXB. + +THERE_MUST_BE_VALUE_IN_XMLVALUE = El objeto debe tener alg\u00fan valor en el campo @XmlValue: {0} + +INCOMPATIBLE_API_VERSION = El archivo jar de la API de JAXB 2.1 se est\u00e1 cargando (desde {0}), pero esta implantaci\u00f3n de referencia (de {1}) necesita el archivo jar de la API de JAXB 2.2. + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +INCOMPATIBLE_API_VERSION_MUSTANG = La API de JAXB 2.1 se est\u00e1 cargando desde el classloader de inicializaci\u00f3n de datos, pero esta implantaci\u00f3n de referencia (de {1}) necesita la API de la versi\u00f3n 2.2. Utilice el mecanismo de directorio aprobado para colocar jaxb-api.jar en el classloader de inicializaci\u00f3n de datos. (Visite http://java.sun.com/j2se/1.6.0/docs/guide/standards/) + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +RUNNING_WITH_1_0_RUNTIME = Est\u00e1 intentando ejecutar JAXB 2.0 en tiempo de ejecuci\u00f3n (desde {1}), pero tiene un JAXB 1.0 en tiempo de ejecuci\u00f3n antiguo en la classpath (en {0}). Elimine JAXB 1.0 en tiempo de ejecuci\u00f3n para que la versi\u00f3n 2.0 en tiempo de ejecuci\u00f3n funcione correctamente. + +UNMATCHABLE_ADAPTER = El adaptador {0} no es aplicable al tipo de campo {1}. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_INSTANTIATION_EXCEPTION = No se ha podido crear la instancia de AccessorFactory, {0} para la clase {1}. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_ACCESS_EXCEPTION = No se ha podido acceder a la instancia de AccessorFactory, {0} para la clase {1}. + +CUSTOM_ACCESSORFACTORY_PROPERTY_ERROR = El elemento AccessorFactory personalizado, {0}, est\u00e1 informando de un error al acceder a una propiedad. {1} + +CUSTOM_ACCESSORFACTORY_FIELD_ERROR = El elemento AccessorFactory personalizado, {0}, est\u00e1 informando de un error al acceder a un campo. {1} + +ANONYMOUS_ARRAY_ITEM = {0} se utiliza como un tipo de componente de matriz, por lo que no puede ser an\u00f3nimo. + +XMLGREGORIANCALENDAR_INVALID = Juego de campos no v\u00e1lido definido para el tipo XMLGregorianCalendar {0}. + +XMLGREGORIANCALENDAR_SEC = No se han definido los segundos. + +XMLGREGORIANCALENDAR_MIN = No se han definido los minutos. + +XMLGREGORIANCALENDAR_HR = No se ha definido la hora. + +XMLGREGORIANCALENDAR_DAY = No se ha definido el d\u00eda. + +XMLGREGORIANCALENDAR_MONTH = No se ha definido el mes. + +XMLGREGORIANCALENDAR_YEAR = No se ha definido el a\u00f1o. + +XMLGREGORIANCALENDAR_TIMEZONE = No se ha definido la zona horaria. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_fr.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_fr.properties new file mode 100644 index 00000000..607a6438 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_fr.properties @@ -0,0 +1,136 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +ID_MUST_BE_STRING = La propri\u00e9t\u00e9 "{0}" comporte une annotation XmlID qui n''est pas de type String. + +# {0} - field or field accessor (getter/setter) e.g.: foo.Bar#field has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement OR foo.Bar#getField() has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement +MUTUALLY_EXCLUSIVE_ANNOTATIONS = {0} comporte des annotations @{1} et @{2} mutuellement exclusives + +DUPLICATE_ANNOTATIONS = L''annotation @{0} figure \u00e0 deux emplacements ; un seul est suffisant. + +# {0} - class name. e.g.: java.lang.StackTraceElement does not have a no-arg default constructor. +NO_DEFAULT_CONSTRUCTOR = {0} ne comporte aucun constructeur sans argument par d\u00e9faut. + +CANT_HANDLE_INTERFACE = {0} est une interface et JAXB ne peut pas g\u00e9rer les interfaces. + +CANT_HANDLE_INNER_CLASS = {0} est une classe interne non statique et JAXB ne peut pas g\u00e9rer ce type de classe. + +ANNOTATION_ON_WRONG_METHOD = L'annotation JAXB figure sur une m\u00e9thode qui n'est pas une propri\u00e9t\u00e9 JAXB + +GETTER_SETTER_INCOMPATIBLE_TYPE = Le type de m\u00e9thode get est {0} mais celui de la m\u00e9thode set est {1}. Ils doivent \u00eatre identiques. + +DUPLICATE_ENTRY_IN_PROP_ORDER = La propri\u00e9t\u00e9 "{0}" appara\u00eet plusieurs fois dans l''annotation @XmlType.propOrder + +DUPLICATE_PROPERTIES = Il existe deux propri\u00e9t\u00e9s nomm\u00e9es "{0}" + +XML_ELEMENT_MAPPING_ON_NON_IXMLELEMENT_METHOD = L''annotation @XmlElementMapping figure sur la m\u00e9thode {0}, mais elle ne renvoie aucun sous-type de JAXBElement. + +# {0} - (xsd) type name. e.g. ns:MyType is not bound to a complex type, and therefore illegal as the scope. +SCOPE_IS_NOT_COMPLEXTYPE = {0} n''est pas li\u00e9 \u00e0 un type complexe et est donc interdit en tant que port\u00e9e. + +CONFLICTING_XML_ELEMENT_MAPPING = Le nom d''\u00e9l\u00e9ment '{'{0}'}'{1} comporte plusieurs mappings. + +REFERENCE_TO_NON_ELEMENT = La propri\u00e9t\u00e9 {0} est annot\u00e9e avec @XmlReference mais ne fait r\u00e9f\u00e9rence \u00e0 aucun \u00e9l\u00e9ment. + +NON_EXISTENT_ELEMENT_MAPPING = Aucun mapping d''\u00e9l\u00e9ments n''existe pour "{0}":"{1}" + +TWO_ATTRIBUTE_WILDCARDS = {0} comporte deux propri\u00e9t\u00e9s avec l''annotation @XmlAnyAttribute. + +SUPER_CLASS_HAS_WILDCARD = L'annotation @XmlAnyAttribute n'est pas possible lorsqu'elle figure d\u00e9j\u00e0 sur une classe de base. + +INVALID_ATTRIBUTE_WILDCARD_TYPE = L''annotation @XmlAnyAttribute figure sur une propri\u00e9t\u00e9 dont le type est {0}, mais elle doit pouvoir \u00eatre affect\u00e9e \u00e0 java.util.Map. + +PROPERTY_MISSING_FROM_ORDER = La propri\u00e9t\u00e9 {0} est pr\u00e9sente, mais n''est pas indiqu\u00e9e dans @XmlType.propOrder + +PROPERTY_ORDER_CONTAINS_UNUSED_ENTRY = La propri\u00e9t\u00e9 {0} appara\u00eet dans @XmlType.propOrder, mais ce type de propri\u00e9t\u00e9 n''existe pas. Vous vouliez peut-\u00eatre dire {1} ? + +# {1} - (local) type name e.g.: '#foo' is not a valid value for 'NCName' +INVALID_XML_ENUM_VALUE = "{0}" n''est pas une valeur valide pour {1}. + +NO_IMAGE_WRITER = Aucune classe javax.imageio.ImageWriter n''est disponible pour le type MIME "{0}" indiqu\u00e9 + +ILLEGAL_MIME_TYPE = "{0}" n''est pas un type MIME valide : {1} + +ILLEGAL_ANNOTATION = L''annotation {0} ne peut pas \u00eatre plac\u00e9e ici + +MULTIPLE_VALUE_PROPERTY = Une seule annotation @XmlValue est autoris\u00e9e par classe, mais deux propri\u00e9t\u00e9s sont annot\u00e9es avec @XmlValue. + +XMLVALUE_IN_DERIVED_TYPE = L'annotation @XmlValue n'est pas autoris\u00e9e sur une classe qui d\u00e9rive d'une autre classe. + +ELEMENT_AND_VALUE_PROPERTY = Si une classe comporte la propri\u00e9t\u00e9 @XmlElement, elle ne peut pas comporter la propri\u00e9t\u00e9 @XmlValue. + +CONFLICTING_XML_TYPE_MAPPING = Deux classes portent le m\u00eame nom de type XML "{0}". Utilisez @XmlType.name et XmlType.namespace pour leur affecter des noms diff\u00e9rents. + +SIMPLE_TYPE_IS_REQUIRED = @XmlAttribute/@XmlValue doit r\u00e9f\u00e9rencer un type Java correspondant au texte du XML. + +PROPERTY_COLLISION = La classe comporte deux propri\u00e9t\u00e9s du m\u00eame nom ("{0}") + +INVALID_IDREF = La propri\u00e9t\u00e9 XmlIDREF r\u00e9f\u00e9rence un type "{0}" qui ne comporte aucune propri\u00e9t\u00e9 XmlID. + +INVALID_XML_ELEMENT_REF = @XmlElementRef non valide : le type "{0}" ou ses sous-classes ne sont pas connus dans ce contexte. + +NO_XML_ELEMENT_DECL = Il n''existe aucune classe ObjectFactory comportant une annotation @XmlElementDecl pour l''\u00e9l\u00e9ment '{'{0}'}'{1}. + +XML_ELEMENT_WRAPPER_ON_NON_COLLECTION = @XmlElementWrapper est autoris\u00e9e uniquement sur une propri\u00e9t\u00e9 de collection, mais "{0}" n''est pas une propri\u00e9t\u00e9 de collection. + +ANNOTATION_NOT_ALLOWED = L''annotation {0} n''est pas autoris\u00e9e sur ce type de propri\u00e9t\u00e9. + +XMLLIST_NEEDS_SIMPLETYPE = {0} correspond \u00e0 un fragment XML structur\u00e9 (c''est-\u00e0-dire un type complexe), qui n''est donc pas compatible avec @XmlList. + +XMLLIST_ON_SINGLE_PROPERTY = @XmlList ne peut pas figurer sur une propri\u00e9t\u00e9 monovaleur + +NO_FACTORY_METHOD = La classe de fabrique "{0}" ne comporte aucune m\u00e9thode de fabrique sans argument statique "{1}". + +FACTORY_CLASS_NEEDS_FACTORY_METHOD = XmlType n''a d\u00e9fini aucune m\u00e9thode de fabrique pour la classe Factory "{0}". + +MISSING_JAXB_PROPERTIES = Le fichier jaxb.properties est manquant dans le package "{0}". L''avez-vous copi\u00e9 \u00e0 partir du r\u00e9pertoire source g\u00e9n\u00e9r\u00e9 ou inclus dans le classpath ? + +TRANSIENT_FIELD_NOT_BINDABLE = Le champ non persistant "{0}" ne peut comporter aucune annotation JAXB. + +THERE_MUST_BE_VALUE_IN_XMLVALUE = Le champ @XmlValue de l''objet doit comporter une valeur : {0} + +INCOMPATIBLE_API_VERSION = Le fichier JAR de l''API JAXB 2.1 est en cours de chargement (\u00e0 partir de {0}), mais cette impl\u00e9mentation de r\u00e9f\u00e9rence (\u00e0 partir de {1}) exige le fichier JAR de l''API JAXB 2.2. + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +INCOMPATIBLE_API_VERSION_MUSTANG = L''API JAXB 2.1 est en cours de chargement \u00e0 partir du chargeur de classe "boostrap", mais cette impl\u00e9mentation de r\u00e9f\u00e9rence (\u00e0 partir de {1}) n\u00e9cessite l''API 2.2. Utilisez le m\u00e9canisme de r\u00e9pertoire "endorsed" pour placer jaxb-api.jar dans le chargeur de classe "boostrap". (Voir http://java.sun.com/j2se/1.6.0/docs/guide/standards/) + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +RUNNING_WITH_1_0_RUNTIME = Vous essayez d''ex\u00e9cuter le runtime JAXB 2.0 (\u00e0 partir de {1}) mais l''ancien runtime JAXB 1.0 figure avant dans le classpath (au niveau de {0}). Enlevez le runtime JAXB 1.0 pour que le runtime 2.0 fonctionne correctement. + +UNMATCHABLE_ADAPTER = L''adaptateur {0} n''est pas applicable au type de champ {1}. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_INSTANTIATION_EXCEPTION = Impossible de cr\u00e9er une instance d''AccessorFactory {0} pour la classe {1}. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_ACCESS_EXCEPTION = Impossible d''acc\u00e9der \u00e0 l''instance d''AccessorFactory {0} pour la classe {1}. + +CUSTOM_ACCESSORFACTORY_PROPERTY_ERROR = L''instance AccessorFactory personnalis\u00e9e, {0}, signale une erreur lors de l''acc\u00e8s \u00e0 une propri\u00e9t\u00e9. {1} + +CUSTOM_ACCESSORFACTORY_FIELD_ERROR = L''instance AccessorFactory personnalis\u00e9e, {0}, signale une erreur lors de l''acc\u00e8s \u00e0 un champ. {1} + +ANONYMOUS_ARRAY_ITEM = {0} est utilis\u00e9 en tant que type de composant de tableau, il ne peut donc pas \u00eatre anonyme. + +XMLGREGORIANCALENDAR_INVALID = Ensemble de champs non valide d\u00e9fini pour le type XMLGregorianCalendar {0}. + +XMLGREGORIANCALENDAR_SEC = Secondes non d\u00e9finies. + +XMLGREGORIANCALENDAR_MIN = Minutes non d\u00e9finies. + +XMLGREGORIANCALENDAR_HR = Heure non d\u00e9finie. + +XMLGREGORIANCALENDAR_DAY = Jour non d\u00e9fini. + +XMLGREGORIANCALENDAR_MONTH = Mois non d\u00e9fini. + +XMLGREGORIANCALENDAR_YEAR = Ann\u00e9e non d\u00e9finie. + +XMLGREGORIANCALENDAR_TIMEZONE = Fuseau horaire non d\u00e9fini. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_it.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_it.properties new file mode 100644 index 00000000..3d65b254 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_it.properties @@ -0,0 +1,136 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +ID_MUST_BE_STRING = La propriet\u00e0 "{0}" contiene un''annotazione XmlID ma non \u00e8 di tipo String. + +# {0} - field or field accessor (getter/setter) e.g.: foo.Bar#field has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement OR foo.Bar#getField() has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement +MUTUALLY_EXCLUSIVE_ANNOTATIONS = {0} contiene le annotazioni @{1} e @{2} che si escludono a vicenda + +DUPLICATE_ANNOTATIONS = L''annotazione @{0} si trova in due posizioni. Una posizione \u00e8 sufficiente. + +# {0} - class name. e.g.: java.lang.StackTraceElement does not have a no-arg default constructor. +NO_DEFAULT_CONSTRUCTOR = {0} non dispone di un costruttore senza argomenti predefinito. + +CANT_HANDLE_INTERFACE = {0} \u00e8 un''interfaccia e JAXB non pu\u00f2 gestire interfacce. + +CANT_HANDLE_INNER_CLASS = {0} \u00e8 una classe interna non statica e JAXB non pu\u00f2 gestire tali classi. + +ANNOTATION_ON_WRONG_METHOD = L'annotazione JAXB \u00e8 posizionata su un metodo che non \u00e8 una propriet\u00e0 JAXB + +GETTER_SETTER_INCOMPATIBLE_TYPE = Il tipo del getter \u00e8 {0} mentre quello del setter \u00e8 {1}. Devono essere uguali. + +DUPLICATE_ENTRY_IN_PROP_ORDER = La propriet\u00e0 "{0}" \u00e8 presente pi\u00f9 volte in @XmlType.propOrder + +DUPLICATE_PROPERTIES = Esistono due propriet\u00e0 denominate "{0}" + +XML_ELEMENT_MAPPING_ON_NON_IXMLELEMENT_METHOD = Sul metodo {0} \u00e8 presente @XmlElementMapping ma non restituisce un sottotipo di JAXBElement. + +# {0} - (xsd) type name. e.g. ns:MyType is not bound to a complex type, and therefore illegal as the scope. +SCOPE_IS_NOT_COMPLEXTYPE = {0} non \u00e8 associato a un tipo complesso e pertanto non \u00e8 valido come l''ambito. + +CONFLICTING_XML_ELEMENT_MAPPING = Il nome dell''elemento '{'{0}'}'{1} ha pi\u00f9 mapping. + +REFERENCE_TO_NON_ELEMENT = La propriet\u00e0 {0} \u00e8 annotata con @XmlReference ma non fa riferimento a un elemento. + +NON_EXISTENT_ELEMENT_MAPPING = Non esiste alcun mapping dell''elemento per "{0}":"{1}" + +TWO_ATTRIBUTE_WILDCARDS = {0} ha due propriet\u00e0 con l''annotazione @XmlAnyAttribute. + +SUPER_CLASS_HAS_WILDCARD = Impossibile avere @XmlAnyAttribute se \u00e8 gi\u00e0 presente in una classe di base. + +INVALID_ATTRIBUTE_WILDCARD_TYPE = @XmlAnyAttribute \u00e8 posizionato su una propriet\u00e0 il cui tipo \u00e8 {0} ma deve essere assegnabile a Java.util.Map. + +PROPERTY_MISSING_FROM_ORDER = La propriet\u00e0 {0} \u00e8 presente ma non specificata in @XmlType.propOrder + +PROPERTY_ORDER_CONTAINS_UNUSED_ENTRY = La propriet\u00e0 {0} viene visualizzata in @XmlType.propOrder ma \u00e8 inesistente. Si intendeva forse {1}? + +# {1} - (local) type name e.g.: '#foo' is not a valid value for 'NCName' +INVALID_XML_ENUM_VALUE = "{0}" non \u00e8 un valore valido per {1}. + +NO_IMAGE_WRITER = Nessun javax.imageio.ImageWriter disponibile per il tipo MIME specificato "{0}" + +ILLEGAL_MIME_TYPE = "{0}" non \u00e8 un tipo MIME valido: {1} + +ILLEGAL_ANNOTATION = Impossibile posizionare qui l''annotazione {0} + +MULTIPLE_VALUE_PROPERTY = \u00c8 consentito un solo @XmlValue per classe ma due propriet\u00e0 sono annotate con @XmlValue. + +XMLVALUE_IN_DERIVED_TYPE = @XmlValue non \u00e8 consentito su una classe derivante da un'altra classe. + +ELEMENT_AND_VALUE_PROPERTY = Se una classe ha la propriet\u00e0 @XmlElement non pu\u00f2 avere la propriet\u00e0 @XmlValue. + +CONFLICTING_XML_TYPE_MAPPING = Due classi hanno lo stesso nome del tipo XML "{0}". Usare @XmlType.name e @XmlType.namespace per assegnare loro nomi diversi. + +SIMPLE_TYPE_IS_REQUIRED = \u00c8 necessario che @XmlAttribute/@XmlValue faccia riferimento a un tipo Java mappato al testo in XML. + +PROPERTY_COLLISION = La classe ha due propriet\u00e0 dello stesso nome "{0}" + +INVALID_IDREF = La propriet\u00e0 XmlIDREF fa riferimento a un tipo "{0}" che non ha una propriet\u00e0 XmlID. + +INVALID_XML_ELEMENT_REF = @XmlElementRef non valido: il tipo "{0}" o una delle relative classi secondarie sono sconosciuti a questo contesto. + +NO_XML_ELEMENT_DECL = Non \u00e8 presente alcun ObjectFactory con un @XmlElementDecl per l''elemento '{'{0}'}'{1}. + +XML_ELEMENT_WRAPPER_ON_NON_COLLECTION = @XmlElementWrapper \u00e8 consentito solo su una propriet\u00e0 della raccolta ma "{0}" non \u00e8 una propriet\u00e0 della raccolta. + +ANNOTATION_NOT_ALLOWED = L''annotazione {0} non \u00e8 consentita su questo tipo di propriet\u00e0. + +XMLLIST_NEEDS_SIMPLETYPE = {0} \u00e8 mappato a un frammento XML strutturato (tipo complesso AKA) e pertanto \u00e8 incompatibile con @XmlList. + +XMLLIST_ON_SINGLE_PROPERTY = Impossibile posizionare @XmlList su una propriet\u00e0 a valore singolo + +NO_FACTORY_METHOD = La classe factory "{0}" non dispone del metodo factory ad argomenti zero statici "{1}". + +FACTORY_CLASS_NEEDS_FACTORY_METHOD = XmlType non ha definito un metodo factory per la classe factory "{0}". + +MISSING_JAXB_PROPERTIES = File jaxb.properties mancante nel package "{0}". \u00c8 stato copiato dalla directory di origine generato o bisogna includerlo nel classpath? + +TRANSIENT_FIELD_NOT_BINDABLE = Il campo transitorio "{0}" non pu\u00f2 avere annotazioni JAXB. + +THERE_MUST_BE_VALUE_IN_XMLVALUE = L''oggetto deve avere un valore nel relativo campo @XmlValue: {0} + +INCOMPATIBLE_API_VERSION = \u00c8 in corso il caricamento del file jar API JAXB 2.1 (da {0}) ma questa RI (da {1}) richiede un file jar API JAXB 2.2. + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +INCOMPATIBLE_API_VERSION_MUSTANG = \u00c8 in corso il caricamento dell''API JAXB 2.1 dal classloader di bootstrap ma questa RI (da {1}) richiede l''API 2.2. Usare il meccanismo della directory "endorsed" per posizionare jaxb-api.jar nel classloader di bootstrap (vedere http://java.sun.com/j2se/1.6.0/docs/guide/standards/). + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +RUNNING_WITH_1_0_RUNTIME = Si sta tentando di eseguire il runtime JAXB 2.0 (da {1}) ma si dispone di un runtime JAXB 1.0 di versione precedente nel classpath (in {0}). Rimuovere il runtime JAXB 1.0 affinch\u00e9 il runtime 2.0 possa funzionare correttamente. + +UNMATCHABLE_ADAPTER = L''adattatore {0} non \u00e8 applicabile al tipo di campo {1}. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_INSTANTIATION_EXCEPTION = Impossibile creare l''istanza di AccessorFactory, {0} per la classe {1}. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_ACCESS_EXCEPTION = Impossibile accedere all''istanza di AccessorFactory, {0} per la classe {1}. + +CUSTOM_ACCESSORFACTORY_PROPERTY_ERROR = AccessorFactory personalizzato, {0}, riporta un errore durante l''accesso a una propriet\u00e0. {1} + +CUSTOM_ACCESSORFACTORY_FIELD_ERROR = AccessorFactory personalizzato, {0}, riporta un errore durante l''accesso a un campo. {1} + +ANONYMOUS_ARRAY_ITEM = {0} viene usato come tipo di componente di array pertanto non pu\u00f2 essere anonimo. + +XMLGREGORIANCALENDAR_INVALID = Set di campi non valido impostato per il tipo XMLGregorianCalendar {0}. + +XMLGREGORIANCALENDAR_SEC = Secondi non impostati. + +XMLGREGORIANCALENDAR_MIN = Minuti non impostati. + +XMLGREGORIANCALENDAR_HR = Ora non impostata. + +XMLGREGORIANCALENDAR_DAY = Giorno non impostato. + +XMLGREGORIANCALENDAR_MONTH = Mese non impostato. + +XMLGREGORIANCALENDAR_YEAR = Anno non impostato. + +XMLGREGORIANCALENDAR_TIMEZONE = Fuso orario non impostato. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_ja.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_ja.properties new file mode 100644 index 00000000..2af6d20b --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_ja.properties @@ -0,0 +1,136 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +ID_MUST_BE_STRING = \u30d7\u30ed\u30d1\u30c6\u30a3"{0}"\u306b\u306fXmlID\u6ce8\u91c8\u304c\u3042\u308a\u307e\u3059\u304c\u3001\u30bf\u30a4\u30d7\u304c\u6587\u5b57\u5217\u3067\u306f\u3042\u308a\u307e\u305b\u3093\u3002 + +# {0} - field or field accessor (getter/setter) e.g.: foo.Bar#field has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement OR foo.Bar#getField() has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement +MUTUALLY_EXCLUSIVE_ANNOTATIONS = {0}\u306b\u306f\u76f8\u4e92\u306b\u6392\u4ed6\u7684\u306a\u6ce8\u91c8@{1}\u304a\u3088\u3073@{2}\u304c\u3042\u308a\u307e\u3059 + +DUPLICATE_ANNOTATIONS = @{0}\u6ce8\u91c8\u304c2\u7b87\u6240\u3067\u898b\u3064\u304b\u308a\u307e\u3057\u305f\u30021\u3064\u3067\u5341\u5206\u3067\u3059\u3002 + +# {0} - class name. e.g.: java.lang.StackTraceElement does not have a no-arg default constructor. +NO_DEFAULT_CONSTRUCTOR = {0}\u306b\u306f\u5f15\u6570\u306a\u3057\u306e\u30c7\u30d5\u30a9\u30eb\u30c8\u30fb\u30b3\u30f3\u30b9\u30c8\u30e9\u30af\u30bf\u304c\u3042\u308a\u307e\u305b\u3093\u3002 + +CANT_HANDLE_INTERFACE = {0}\u306f\u30a4\u30f3\u30bf\u30d5\u30a7\u30fc\u30b9\u3067\u3059\u3002JAXB\u306f\u30a4\u30f3\u30bf\u30d5\u30a7\u30fc\u30b9\u3092\u51e6\u7406\u3067\u304d\u307e\u305b\u3093\u3002 + +CANT_HANDLE_INNER_CLASS = {0}\u306f\u9759\u7684\u3067\u306a\u3044\u5185\u90e8\u30af\u30e9\u30b9\u3067\u3059\u3002JAXB\u306f\u305d\u308c\u3089\u3092\u51e6\u7406\u3067\u304d\u307e\u305b\u3093\u3002 + +ANNOTATION_ON_WRONG_METHOD = JAXB\u6ce8\u91c8\u306f\u3001JAXB\u30d7\u30ed\u30d1\u30c6\u30a3\u3067\u306f\u306a\u3044\u30e1\u30bd\u30c3\u30c9\u306b\u914d\u7f6e\u3055\u308c\u3066\u3044\u307e\u3059 + +GETTER_SETTER_INCOMPATIBLE_TYPE = getter\u306e\u30bf\u30a4\u30d7\u306f{0}\u3067\u3059\u304c\u3001setter\u306e\u30bf\u30a4\u30d7\u306f{1}\u3067\u3059\u3002\u540c\u3058\u30bf\u30a4\u30d7\u306b\u3059\u308b\u5fc5\u8981\u304c\u3042\u308a\u307e\u3059\u3002 + +DUPLICATE_ENTRY_IN_PROP_ORDER = \u30d7\u30ed\u30d1\u30c6\u30a3"{0}"\u304c@XmlType.propOrder\u306b\u8907\u6570\u3042\u308a\u307e\u3059 + +DUPLICATE_PROPERTIES = "{0}"\u3068\u3044\u3046\u540d\u524d\u306e2\u3064\u306e\u30d7\u30ed\u30d1\u30c6\u30a3\u304c\u5b58\u5728\u3057\u307e\u3059 + +XML_ELEMENT_MAPPING_ON_NON_IXMLELEMENT_METHOD = {0}\u30e1\u30bd\u30c3\u30c9\u306b\u306f@XmlElementMapping\u304c\u3042\u308a\u307e\u3059\u304c\u3001JAXBElement\u306e\u30b5\u30d6\u30bf\u30a4\u30d7\u3092\u8fd4\u3057\u307e\u305b\u3093\u3002 + +# {0} - (xsd) type name. e.g. ns:MyType is not bound to a complex type, and therefore illegal as the scope. +SCOPE_IS_NOT_COMPLEXTYPE = {0}\u306f\u8907\u5408\u578b\u306b\u30d0\u30a4\u30f3\u30c9\u3055\u308c\u3066\u3044\u306a\u3044\u305f\u3081\u3001\u30b9\u30b3\u30fc\u30d7\u3068\u3057\u3066\u4e0d\u6b63\u3067\u3059\u3002 + +CONFLICTING_XML_ELEMENT_MAPPING = \u8981\u7d20\u540d'{'{0}'}'{1}\u306b\u8907\u6570\u306e\u30de\u30c3\u30d4\u30f3\u30b0\u304c\u3042\u308a\u307e\u3059\u3002 + +REFERENCE_TO_NON_ELEMENT = \u30d7\u30ed\u30d1\u30c6\u30a3{0}\u306b\u306f@XmlReference\u306e\u6ce8\u91c8\u304c\u4ed8\u3044\u3066\u3044\u307e\u3059\u304c\u3001\u8981\u7d20\u3092\u53c2\u7167\u3057\u3066\u3044\u307e\u305b\u3093\u3002 + +NON_EXISTENT_ELEMENT_MAPPING = "{0}"\u306e\u8981\u7d20\u30de\u30c3\u30d4\u30f3\u30b0\u304c\u5b58\u5728\u3057\u307e\u305b\u3093:"{1}" + +TWO_ATTRIBUTE_WILDCARDS = {0}\u306b@XmlAnyAttribute\u6ce8\u91c8\u3092\u6301\u30642\u3064\u306e\u30d7\u30ed\u30d1\u30c6\u30a3\u304c\u3042\u308a\u307e\u3059\u3002 + +SUPER_CLASS_HAS_WILDCARD = @XmlAnyAttribute\u304c\u30d9\u30fc\u30b9\u30fb\u30af\u30e9\u30b9\u306b\u3059\u3067\u306b\u3042\u308b\u5834\u5408\u306f\u6307\u5b9a\u3067\u304d\u307e\u305b\u3093\u3002 + +INVALID_ATTRIBUTE_WILDCARD_TYPE = @XmlAnyAttribute\u306f\u30bf\u30a4\u30d7\u304c{0}\u306e\u30d7\u30ed\u30d1\u30c6\u30a3\u306b\u914d\u7f6e\u3055\u308c\u307e\u3059\u304c\u3001java.util.Map\u306b\u5272\u5f53\u53ef\u80fd\u3067\u3042\u308b\u5fc5\u8981\u304c\u3042\u308a\u307e\u3059\u3002 + +PROPERTY_MISSING_FROM_ORDER = \u30d7\u30ed\u30d1\u30c6\u30a3{0}\u304c\u5b58\u5728\u3057\u307e\u3059\u304c\u3001@XmlType.propOrder\u306b\u6307\u5b9a\u3055\u308c\u3066\u3044\u307e\u305b\u3093 + +PROPERTY_ORDER_CONTAINS_UNUSED_ENTRY = \u30d7\u30ed\u30d1\u30c6\u30a3{0}\u304c@XmlType.propOrder\u306b\u3042\u308a\u307e\u3059\u304c\u3001\u305d\u306e\u3088\u3046\u306a\u30d7\u30ed\u30d1\u30c6\u30a3\u306f\u5b58\u5728\u3057\u307e\u305b\u3093\u3002{1}\u306e\u8aa4\u308a\u3067\u3042\u308b\u53ef\u80fd\u6027\u304c\u3042\u308a\u307e\u3059\u3002 + +# {1} - (local) type name e.g.: '#foo' is not a valid value for 'NCName' +INVALID_XML_ENUM_VALUE = "{0}"\u306f{1}\u306b\u5bfe\u3059\u308b\u6709\u52b9\u306a\u5024\u3067\u306f\u3042\u308a\u307e\u305b\u3093\u3002 + +NO_IMAGE_WRITER = \u6307\u5b9a\u3057\u305fMIME \u30bf\u30a4\u30d7"{0}"\u306b\u4f7f\u7528\u3067\u304d\u308bjavax.imageio.ImageWriter\u304c\u3042\u308a\u307e\u305b\u3093 + +ILLEGAL_MIME_TYPE = "{0}"\u306f\u6709\u52b9\u306aMIME\u30bf\u30a4\u30d7\u3067\u306f\u3042\u308a\u307e\u305b\u3093: {1} + +ILLEGAL_ANNOTATION = {0}\u6ce8\u91c8\u3092\u3053\u3053\u306b\u914d\u7f6e\u3059\u308b\u3053\u3068\u306f\u3067\u304d\u307e\u305b\u3093 + +MULTIPLE_VALUE_PROPERTY = @XmlValue\u306f\u5404\u30af\u30e9\u30b9\u306b1\u3064\u306e\u307f\u4f7f\u7528\u3067\u304d\u307e\u3059\u304c\u30012\u3064\u306e\u30d7\u30ed\u30d1\u30c6\u30a3\u306b@XmlValue\u306e\u6ce8\u91c8\u304c\u4ed8\u3044\u3066\u3044\u307e\u3059\u3002 + +XMLVALUE_IN_DERIVED_TYPE = @XmlValue\u306f\u3001\u5225\u306e\u30af\u30e9\u30b9\u3092\u5c0e\u51fa\u3059\u308b\u30af\u30e9\u30b9\u3067\u306f\u4f7f\u7528\u3067\u304d\u307e\u305b\u3093\u3002 + +ELEMENT_AND_VALUE_PROPERTY = \u30af\u30e9\u30b9\u306b@XmlElement\u30d7\u30ed\u30d1\u30c6\u30a3\u304c\u3042\u308b\u5834\u5408\u3001@XmlValue\u30d7\u30ed\u30d1\u30c6\u30a3\u3092\u6307\u5b9a\u3059\u308b\u3053\u3068\u306f\u3067\u304d\u307e\u305b\u3093\u3002 + +CONFLICTING_XML_TYPE_MAPPING = 2\u3064\u306e\u30af\u30e9\u30b9\u306b\u540c\u3058XML\u30bf\u30a4\u30d7\u540d"{0}"\u304c\u4f7f\u7528\u3055\u308c\u3066\u3044\u307e\u3059\u3002@XmlType.name\u304a\u3088\u3073@XmlType.namespace\u3092\u4f7f\u7528\u3057\u3066\u3001\u5225\u306e\u540d\u524d\u3092\u5272\u308a\u5f53\u3066\u3066\u304f\u3060\u3055\u3044\u3002 + +SIMPLE_TYPE_IS_REQUIRED = @XmlAttribute/@XmlValue\u306f\u3001XML\u5185\u306e\u30c6\u30ad\u30b9\u30c8\u306b\u30de\u30c3\u30d7\u3055\u308c\u308bJava\u30bf\u30a4\u30d7\u3092\u53c2\u7167\u3059\u308b\u5fc5\u8981\u304c\u3042\u308a\u307e\u3059\u3002 + +PROPERTY_COLLISION = \u30af\u30e9\u30b9\u306b\u540c\u3058\u540d\u524d"{0}"\u3092\u6301\u30642\u3064\u306e\u30d7\u30ed\u30d1\u30c6\u30a3\u304c\u3042\u308a\u307e\u3059 + +INVALID_IDREF = XmlIDREF\u30d7\u30ed\u30d1\u30c6\u30a3\u306f\u3001XmlID\u30d7\u30ed\u30d1\u30c6\u30a3\u304c\u306a\u3044\u30bf\u30a4\u30d7"{0}"\u3092\u53c2\u7167\u3057\u3066\u3044\u307e\u3059\u3002 + +INVALID_XML_ELEMENT_REF = @XmlElementRef\u304c\u7121\u52b9\u3067\u3059: \u30bf\u30a4\u30d7"{0}"\u307e\u305f\u306f\u305d\u306e\u30b5\u30d6\u30af\u30e9\u30b9\u306f\u3053\u306e\u30b3\u30f3\u30c6\u30ad\u30b9\u30c8\u3067\u306f\u8a8d\u8b58\u3055\u308c\u307e\u305b\u3093\u3002 + +NO_XML_ELEMENT_DECL = \u8981\u7d20'{'{0}'}'{1}\u306e@XmlElementDecl\u3092\u6301\u3064ObjectFactory\u304c\u3042\u308a\u307e\u305b\u3093\u3002 + +XML_ELEMENT_WRAPPER_ON_NON_COLLECTION = @XmlElementWrapper\u306f\u30b3\u30ec\u30af\u30b7\u30e7\u30f3\u30fb\u30d7\u30ed\u30d1\u30c6\u30a3\u3067\u306e\u307f\u4f7f\u7528\u3067\u304d\u307e\u3059\u304c\u3001"{0}"\u306f\u30b3\u30ec\u30af\u30b7\u30e7\u30f3\u30fb\u30d7\u30ed\u30d1\u30c6\u30a3\u3067\u306f\u3042\u308a\u307e\u305b\u3093\u3002 + +ANNOTATION_NOT_ALLOWED = {0}\u6ce8\u91c8\u306f\u3053\u306e\u7a2e\u985e\u306e\u30d7\u30ed\u30d1\u30c6\u30a3\u3067\u306f\u4f7f\u7528\u3067\u304d\u307e\u305b\u3093\u3002 + +XMLLIST_NEEDS_SIMPLETYPE = {0}\u306f\u69cb\u9020\u5316\u3055\u308c\u305fXML\u30d5\u30e9\u30b0\u30e1\u30f3\u30c8(\u8907\u5408\u578b)\u306b\u30de\u30c3\u30d7\u3055\u308c\u308b\u305f\u3081\u3001@XmlList\u3068\u4e92\u63db\u6027\u304c\u3042\u308a\u307e\u305b\u3093\u3002 + +XMLLIST_ON_SINGLE_PROPERTY = @XmlList\u3092\u3001\u5358\u4e00\u306e\u5024\u3092\u6301\u3064\u30d7\u30ed\u30d1\u30c6\u30a3\u306b\u914d\u7f6e\u3059\u308b\u3053\u3068\u306f\u3067\u304d\u307e\u305b\u3093 + +NO_FACTORY_METHOD = \u30d5\u30a1\u30af\u30c8\u30ea\u30fb\u30af\u30e9\u30b9"{0}"\u306b\u5f15\u6570\u304c\u30bc\u30ed\u306e\u9759\u7684\u306a\u30d5\u30a1\u30af\u30c8\u30ea\u30fb\u30e1\u30bd\u30c3\u30c9"{1}"\u304c\u3042\u308a\u307e\u305b\u3093\u3002 + +FACTORY_CLASS_NEEDS_FACTORY_METHOD = XmlType\u3067\u306f\u30d5\u30a1\u30af\u30c8\u30ea\u30fb\u30af\u30e9\u30b9"{0}"\u306e\u30d5\u30a1\u30af\u30c8\u30ea\u30fb\u30e1\u30bd\u30c3\u30c9\u304c\u5b9a\u7fa9\u3055\u308c\u3066\u3044\u307e\u305b\u3093\u3002 + +MISSING_JAXB_PROPERTIES = \u30d1\u30c3\u30b1\u30fc\u30b8"{0}"\u306bjaxb.properties\u30d5\u30a1\u30a4\u30eb\u304c\u3042\u308a\u307e\u305b\u3093\u3002\u3053\u306e\u30d5\u30a1\u30a4\u30eb\u3092\u751f\u6210\u3055\u308c\u305f\u30bd\u30fc\u30b9\u30fb\u30c7\u30a3\u30ec\u30af\u30c8\u30ea\u304b\u3089\u30b3\u30d4\u30fc\u3057\u305f\u304b\u3001\u30af\u30e9\u30b9\u30d1\u30b9\u306b\u542b\u3081\u307e\u3057\u305f\u304b\u3002 + +TRANSIENT_FIELD_NOT_BINDABLE = \u4e00\u6642\u30d5\u30a3\u30fc\u30eb\u30c9"{0}"\u306bJAXB\u6ce8\u91c8\u3092\u4f7f\u7528\u3059\u308b\u3053\u3068\u306f\u3067\u304d\u307e\u305b\u3093\u3002 + +THERE_MUST_BE_VALUE_IN_XMLVALUE = \u30aa\u30d6\u30b8\u30a7\u30af\u30c8\u306e@XmlValue\u30d5\u30a3\u30fc\u30eb\u30c9\u306b\u306f\u5024\u304c\u5fc5\u8981\u3067\u3059: {0} + +INCOMPATIBLE_API_VERSION = JAXB 2.1 API jar\u304c({0}\u304b\u3089)\u30ed\u30fc\u30c9\u3055\u308c\u3066\u3044\u307e\u3059\u304c\u3001\u3053\u306e({1}\u304b\u3089\u306e)RI\u306b\u306fJAXB 2.2 API jar\u304c\u5fc5\u8981\u3067\u3059\u3002 + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +INCOMPATIBLE_API_VERSION_MUSTANG = JAXB 2.1 API\u306f\u30d6\u30fc\u30c8\u30b9\u30c8\u30e9\u30c3\u30d7\u30fb\u30af\u30e9\u30b9\u30fb\u30ed\u30fc\u30c0\u30fc\u304b\u3089\u30ed\u30fc\u30c9\u3055\u308c\u3066\u3044\u307e\u3059\u304c\u3001\u3053\u306e({1}\u304b\u3089\u306e)RI\u306b\u306f2.2 API\u304c\u5fc5\u8981\u3067\u3059\u3002jaxb-api.jar\u3092\u30d6\u30fc\u30c8\u30b9\u30c8\u30e9\u30c3\u30d7\u30fb\u30af\u30e9\u30b9\u30fb\u30ed\u30fc\u30c0\u30fc\u306b\u914d\u7f6e\u3059\u308b\u306b\u306f\u3001\u63a8\u5968\u30c7\u30a3\u30ec\u30af\u30c8\u30ea\u30fb\u30e1\u30ab\u30cb\u30ba\u30e0\u3092\u4f7f\u7528\u3057\u307e\u3059(http://java.sun.com/j2se/1.6.0/docs/guide/standards/\u3092\u53c2\u7167) + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +RUNNING_WITH_1_0_RUNTIME = ({1}\u304b\u3089)JAXB 2.0\u30e9\u30f3\u30bf\u30a4\u30e0\u3092\u5b9f\u884c\u3057\u3088\u3046\u3068\u3057\u3066\u3044\u307e\u3059\u304c\u3001({0}\u306e)\u30af\u30e9\u30b9\u30d1\u30b9\u306b\u4ee5\u524d\u306eJAXB 1.0\u30e9\u30f3\u30bf\u30a4\u30e0\u304c\u3042\u308a\u307e\u3059\u30022.0\u30e9\u30f3\u30bf\u30a4\u30e0\u304c\u6b63\u3057\u304f\u52d5\u4f5c\u3059\u308b\u3088\u3046\u306b\u3001JAXB 1.0\u30e9\u30f3\u30bf\u30a4\u30e0\u3092\u524a\u9664\u3057\u3066\u304f\u3060\u3055\u3044\u3002 + +UNMATCHABLE_ADAPTER = \u30a2\u30c0\u30d7\u30bf{0}\u3092\u30d5\u30a3\u30fc\u30eb\u30c9\u30fb\u30bf\u30a4\u30d7{1}\u306b\u9069\u7528\u3059\u308b\u3053\u3068\u306f\u3067\u304d\u307e\u305b\u3093\u3002 + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_INSTANTIATION_EXCEPTION = \u30af\u30e9\u30b9{1}\u306eAccessorFactory {0}\u306e\u30a4\u30f3\u30b9\u30bf\u30f3\u30b9\u3092\u4f5c\u6210\u3067\u304d\u307e\u305b\u3093\u3002 + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_ACCESS_EXCEPTION = \u30af\u30e9\u30b9{1}\u306eAccessorFactory {0}\u306e\u30a4\u30f3\u30b9\u30bf\u30f3\u30b9\u306b\u30a2\u30af\u30bb\u30b9\u3067\u304d\u307e\u305b\u3093\u3002 + +CUSTOM_ACCESSORFACTORY_PROPERTY_ERROR = \u30ab\u30b9\u30bf\u30e0AccessorFactory {0}\u306f\u3001\u30d7\u30ed\u30d1\u30c6\u30a3\u3078\u306e\u30a2\u30af\u30bb\u30b9\u4e2d\u306b\u767a\u751f\u3057\u305f\u30a8\u30e9\u30fc\u3092\u30ec\u30dd\u30fc\u30c8\u3057\u3066\u3044\u307e\u3059\u3002{1} + +CUSTOM_ACCESSORFACTORY_FIELD_ERROR = \u30ab\u30b9\u30bf\u30e0AccessorFactory {0}\u306f\u3001\u30d5\u30a3\u30fc\u30eb\u30c9\u3078\u306e\u30a2\u30af\u30bb\u30b9\u4e2d\u306b\u767a\u751f\u3057\u305f\u30a8\u30e9\u30fc\u3092\u30ec\u30dd\u30fc\u30c8\u3057\u3066\u3044\u307e\u3059\u3002{1} + +ANONYMOUS_ARRAY_ITEM = {0}\u306f\u914d\u5217\u30b3\u30f3\u30dd\u30fc\u30cd\u30f3\u30c8\u30fb\u30bf\u30a4\u30d7\u3068\u3057\u3066\u4f7f\u7528\u3055\u308c\u3066\u3044\u308b\u305f\u3081\u3001\u533f\u540d\u306b\u3067\u304d\u307e\u305b\u3093\u3002 + +XMLGREGORIANCALENDAR_INVALID = XMLGregorianCalendar\u30bf\u30a4\u30d7{0}\u306e\u30d5\u30a3\u30fc\u30eb\u30c9\u30fb\u30bb\u30c3\u30c8\u304c\u7121\u52b9\u3067\u3059\u3002 + +XMLGREGORIANCALENDAR_SEC = \u79d2\u304c\u8a2d\u5b9a\u3055\u308c\u3066\u3044\u307e\u305b\u3093\u3002 + +XMLGREGORIANCALENDAR_MIN = \u5206\u304c\u8a2d\u5b9a\u3055\u308c\u3066\u3044\u307e\u305b\u3093\u3002 + +XMLGREGORIANCALENDAR_HR = \u6642\u9593\u304c\u8a2d\u5b9a\u3055\u308c\u3066\u3044\u307e\u305b\u3093\u3002 + +XMLGREGORIANCALENDAR_DAY = \u65e5\u304c\u8a2d\u5b9a\u3055\u308c\u3066\u3044\u307e\u305b\u3093\u3002 + +XMLGREGORIANCALENDAR_MONTH = \u6708\u304c\u8a2d\u5b9a\u3055\u308c\u3066\u3044\u307e\u305b\u3093\u3002 + +XMLGREGORIANCALENDAR_YEAR = \u5e74\u304c\u8a2d\u5b9a\u3055\u308c\u3066\u3044\u307e\u305b\u3093\u3002 + +XMLGREGORIANCALENDAR_TIMEZONE = \u30bf\u30a4\u30e0\u30be\u30fc\u30f3\u304c\u8a2d\u5b9a\u3055\u308c\u3066\u3044\u307e\u305b\u3093\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_ko.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_ko.properties new file mode 100644 index 00000000..6024c837 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_ko.properties @@ -0,0 +1,136 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +ID_MUST_BE_STRING = "{0}" \uc18d\uc131\uc5d0 XmlID \uc8fc\uc11d\uc774 \uc788\uc9c0\ub9cc \ud574\ub2f9 \uc720\ud615\uc740 \ubb38\uc790\uc5f4\uc774 \uc544\ub2d9\ub2c8\ub2e4. + +# {0} - field or field accessor (getter/setter) e.g.: foo.Bar#field has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement OR foo.Bar#getField() has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement +MUTUALLY_EXCLUSIVE_ANNOTATIONS = {0}\uc758 @{1} \uc8fc\uc11d\uacfc @{2} \uc8fc\uc11d\uc740 \ud568\uaed8 \uc0ac\uc6a9\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +DUPLICATE_ANNOTATIONS = @{0} \uc8fc\uc11d\uc774 \ub450 \uc704\uce58\uc5d0\uc11c \ubc1c\uacac\ub418\uc5c8\uc2b5\ub2c8\ub2e4. \ud55c \uc704\uce58\uc5d0\ub9cc \uc788\uc5b4\uc57c \ud569\ub2c8\ub2e4. + +# {0} - class name. e.g.: java.lang.StackTraceElement does not have a no-arg default constructor. +NO_DEFAULT_CONSTRUCTOR = {0}\uc5d0 \uc778\uc218\uac00 \uc5c6\ub294 \uae30\ubcf8 \uc0dd\uc131\uc790\uac00 \uc5c6\uc2b5\ub2c8\ub2e4. + +CANT_HANDLE_INTERFACE = {0}\uc740(\ub294) \uc778\ud130\ud398\uc774\uc2a4\uc774\uba70 JAXB\ub294 \uc778\ud130\ud398\uc774\uc2a4\ub97c \ucc98\ub9ac\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +CANT_HANDLE_INNER_CLASS = {0}\uc740(\ub294) non-static \ub0b4\ubd80 \ud074\ub798\uc2a4\uc774\uba70 JAXB\ub294 \ud574\ub2f9 \ud074\ub798\uc2a4\ub97c \ucc98\ub9ac\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +ANNOTATION_ON_WRONG_METHOD = JAXB \uc18d\uc131\uc774 \uc544\ub2cc \uba54\uc18c\ub4dc\uc5d0 JAXB \uc8fc\uc11d\uc774 \ubc30\uce58\ub418\uc5c8\uc2b5\ub2c8\ub2e4. + +GETTER_SETTER_INCOMPATIBLE_TYPE = getter\uc758 \uc720\ud615\uc740 {0}, setter\uc758 \uc720\ud615\uc740 {1}\uc785\ub2c8\ub2e4. \ub450 \uc720\ud615\uc740 \ub3d9\uc77c\ud574\uc57c \ud569\ub2c8\ub2e4. + +DUPLICATE_ENTRY_IN_PROP_ORDER = "{0}" \uc18d\uc131\uc774 @XmlType.propOrder\uc5d0\uc11c \ub450 \ubc88 \uc774\uc0c1 \ub098\ud0c0\ub0a9\ub2c8\ub2e4. + +DUPLICATE_PROPERTIES = \uc774\ub984\uc774 "{0}"\uc778 \uc18d\uc131\uc774 \ub450 \uac1c \uc788\uc2b5\ub2c8\ub2e4. + +XML_ELEMENT_MAPPING_ON_NON_IXMLELEMENT_METHOD = {0} \uba54\uc18c\ub4dc\uc5d0 @XmlElementMapping\uc774 \uc788\uc9c0\ub9cc JAXBElement\uc758 \ud558\uc704 \uc720\ud615\uc744 \ubc18\ud658\ud558\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. + +# {0} - (xsd) type name. e.g. ns:MyType is not bound to a complex type, and therefore illegal as the scope. +SCOPE_IS_NOT_COMPLEXTYPE = {0}\uc774(\uac00) \ubcf5\ud569 \uc720\ud615\uc5d0 \ubc14\uc778\ub4dc\ub418\uc9c0 \uc54a\uc544 \ubc94\uc704\ub85c \uc62c\ubc14\ub974\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. + +CONFLICTING_XML_ELEMENT_MAPPING = \uc694\uc18c \uc774\ub984 '{'{0}'}'{1}\uc5d0 \ub9e4\ud551\uc774 \ub450 \uac1c \uc774\uc0c1 \uc788\uc2b5\ub2c8\ub2e4. + +REFERENCE_TO_NON_ELEMENT = {0} \uc18d\uc131\uc740 @XmlReference\ub85c \uc8fc\uc11d \ucc98\ub9ac\ub418\uc5c8\uc9c0\ub9cc \uc694\uc18c\ub97c \ucc38\uc870\ud558\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. + +NON_EXISTENT_ELEMENT_MAPPING = "{0}":"{1}"\uc5d0 \ub300\ud55c \uc694\uc18c \ub9e4\ud551\uc774 \uc874\uc7ac\ud558\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. + +TWO_ATTRIBUTE_WILDCARDS = {0}\uc5d0 @XmlAnyAttribute \uc8fc\uc11d\uc774 \uc788\ub294 \uc18d\uc131\uc774 \ub450 \uac1c \uc788\uc2b5\ub2c8\ub2e4. + +SUPER_CLASS_HAS_WILDCARD = \uae30\ubcf8 \ud074\ub798\uc2a4\uc5d0 \uc774\ubbf8 \ud3ec\ud568\ub41c \uacbd\uc6b0 @XmlAnyAttribute\ub97c \uc0ac\uc6a9\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +INVALID_ATTRIBUTE_WILDCARD_TYPE = @XmlAnyAttribute\ub294 \uc720\ud615\uc774 {0}\uc778 \uc18d\uc131\uc5d0 \ubc30\uce58\ub418\uc5c8\uc9c0\ub9cc java.util.Map\uc5d0 \uc9c0\uc815\ud560 \uc218 \uc788\uc5b4\uc57c \ud569\ub2c8\ub2e4. + +PROPERTY_MISSING_FROM_ORDER = {0} \uc18d\uc131\uc774 \uc788\uc9c0\ub9cc @XmlType.propOrder\uc5d0 \uc9c0\uc815\ub418\uc9c0 \uc54a\uc558\uc2b5\ub2c8\ub2e4. + +PROPERTY_ORDER_CONTAINS_UNUSED_ENTRY = {0} \uc18d\uc131\uc774 @XmlType.propOrder\uc5d0 \ub098\ud0c0\ub098\uc9c0\ub9cc \ud574\ub2f9 \uc18d\uc131\uc774 \uc874\uc7ac\ud558\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. {1}\uc744(\ub97c) \uc0ac\uc6a9\ud558\ub824\uace0 \ud55c \uac83\uc785\ub2c8\uae4c? + +# {1} - (local) type name e.g.: '#foo' is not a valid value for 'NCName' +INVALID_XML_ENUM_VALUE = "{0}"\uc740(\ub294) {1}\uc5d0 \ub300\ud574 \uc801\ud569\ud55c \uac12\uc774 \uc544\ub2d9\ub2c8\ub2e4. + +NO_IMAGE_WRITER = \uc9c0\uc815\ub41c MIME \uc720\ud615 "{0}"\uc5d0 \uc0ac\uc6a9 \uac00\ub2a5\ud55c javax.imageio.ImageWriter\uac00 \uc5c6\uc2b5\ub2c8\ub2e4. + +ILLEGAL_MIME_TYPE = "{0}"\uc740(\ub294) \uc801\ud569\ud55c MIME \uc720\ud615\uc774 \uc544\ub2d8: {1} + +ILLEGAL_ANNOTATION = {0} \uc8fc\uc11d\uc740 \uc5ec\uae30\uc5d0 \ubc30\uce58\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +MULTIPLE_VALUE_PROPERTY = @XmlValue\ub294 \ud074\ub798\uc2a4\ub2f9 \ud558\ub098\ub9cc \ud5c8\uc6a9\ub418\uc9c0\ub9cc \ub450 \uac1c\uc758 \uc18d\uc131\uc774 @XmlValue\ub85c \uc8fc\uc11d \ucc98\ub9ac\ub418\uc5c8\uc2b5\ub2c8\ub2e4. + +XMLVALUE_IN_DERIVED_TYPE = @XmlValue\ub294 \ub2e4\ub978 \ud074\ub798\uc2a4\ub97c \ud30c\uc0dd\ud558\ub294 \ud074\ub798\uc2a4\uc5d0\uc11c \ud5c8\uc6a9\ub418\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. + +ELEMENT_AND_VALUE_PROPERTY = \ud074\ub798\uc2a4\uc5d0 @XmlElement \uc18d\uc131\uc774 \uc788\uc744 \uacbd\uc6b0 @XmlValue \uc18d\uc131\uc744 \ud3ec\ud568\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +CONFLICTING_XML_TYPE_MAPPING = \ub450 \uac1c\uc758 \ud074\ub798\uc2a4\uc5d0 \ub3d9\uc77c\ud55c XML \uc720\ud615 \uc774\ub984 "{0}"\uc774(\uac00) \uc0ac\uc6a9\ub429\ub2c8\ub2e4. @XmlType.name \ubc0f @XmlType.namespace\ub97c \uc0ac\uc6a9\ud558\uc5ec \ud574\ub2f9 \ud074\ub798\uc2a4\uc5d0 \ub2e4\ub978 \uc774\ub984\uc744 \uc9c0\uc815\ud558\uc2ed\uc2dc\uc624. + +SIMPLE_TYPE_IS_REQUIRED = @XmlAttribute/@XmlValue\ub294 XML\uc5d0\uc11c \ud14d\uc2a4\ud2b8\uc5d0 \ub9e4\ud551\ub418\ub294 Java \uc720\ud615\uc744 \ucc38\uc870\ud574\uc57c \ud569\ub2c8\ub2e4. + +PROPERTY_COLLISION = \ud074\ub798\uc2a4\uc5d0 \ub3d9\uc77c\ud55c \uc774\ub984 "{0}"\uc744(\ub97c) \uc0ac\uc6a9\ud558\ub294 \uc18d\uc131\uc774 \ub450 \uac1c \uc788\uc2b5\ub2c8\ub2e4. + +INVALID_IDREF = XmlIDREF \uc18d\uc131\uc774 XmlID \uc18d\uc131\uc744 \ud3ec\ud568\ud558\uc9c0 \uc54a\ub294 "{0}" \uc720\ud615\uc744 \ucc38\uc870\ud558\uace0 \uc788\uc2b5\ub2c8\ub2e4. + +INVALID_XML_ELEMENT_REF = \ubd80\uc801\ud569\ud55c @XmlElementRef: \uc774 \ucee8\ud14d\uc2a4\ud2b8\uc5d0\uc11c "{0}" \uc720\ud615 \ub610\ub294 \ud574\ub2f9 \ud558\uc704 \ud074\ub798\uc2a4\ub97c \uc778\uc2dd\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +NO_XML_ELEMENT_DECL = '{'{0}'}'{1} \uc694\uc18c\uc5d0 \ub300\ud574 @XmlElementDecl\uc774 \ud3ec\ud568\ub41c ObjectFactory\uac00 \uc5c6\uc2b5\ub2c8\ub2e4. + +XML_ELEMENT_WRAPPER_ON_NON_COLLECTION = @XmlElementWrapper\ub294 \ubaa8\uc74c \uc18d\uc131\uc5d0\uc11c\ub9cc \ud5c8\uc6a9\ub418\uc9c0\ub9cc "{0}"\uc740(\ub294) \ubaa8\uc74c \uc18d\uc131\uc774 \uc544\ub2d9\ub2c8\ub2e4. + +ANNOTATION_NOT_ALLOWED = {0} \uc8fc\uc11d\uc740 \uc774 \uc885\ub958\uc758 \uc18d\uc131\uc5d0\uc11c \ud5c8\uc6a9\ub418\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. + +XMLLIST_NEEDS_SIMPLETYPE = {0}\uc740(\ub294) \uad6c\uc870\ud654\ub41c XML \ub2e8\ud3b8(AKA \ubcf5\ud569 \uc720\ud615)\uc5d0 \ub9e4\ud551\ub418\ubbc0\ub85c @XmlList\uc640 \ud638\ud658\ub418\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. + +XMLLIST_ON_SINGLE_PROPERTY = @XmlList\ub294 \ub2e8\uc77c \uac12 \uc18d\uc131\uc5d0 \ubc30\uce58\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +NO_FACTORY_METHOD = \ud329\ud1a0\ub9ac \ud074\ub798\uc2a4 "{0}"\uc5d0 \uc778\uc218\uac00 \uc5c6\ub294 static \ud329\ud1a0\ub9ac \uba54\uc18c\ub4dc "{1}"\uc774(\uac00) \uc5c6\uc2b5\ub2c8\ub2e4. + +FACTORY_CLASS_NEEDS_FACTORY_METHOD = XmlType\uc774 \ud329\ud1a0\ub9ac \ud074\ub798\uc2a4 "{0}"\uc5d0 \ub300\ud55c \ud329\ud1a0\ub9ac \uba54\uc18c\ub4dc\ub97c \uc815\uc758\ud558\uc9c0 \uc54a\uc558\uc2b5\ub2c8\ub2e4. + +MISSING_JAXB_PROPERTIES = "{0}" \ud328\ud0a4\uc9c0\uc5d0 jaxb.properties \ud30c\uc77c\uc774 \ub204\ub77d\ub418\uc5c8\uc2b5\ub2c8\ub2e4. \uc774 \ud30c\uc77c\uc744 \uc0dd\uc131\ub41c \uc18c\uc2a4 \ub514\ub809\ud1a0\ub9ac\uc5d0\uc11c \ubcf5\uc0ac\ud558\uac70\ub098 \ud074\ub798\uc2a4 \uacbd\ub85c\uc5d0 \ud3ec\ud568\uc2dc\ucf30\uc2b5\ub2c8\uae4c? + +TRANSIENT_FIELD_NOT_BINDABLE = \uc784\uc2dc \ud544\ub4dc "{0}"\uc5d0\ub294 JAXB \uc8fc\uc11d\uc774 \ud3ec\ud568\ub420 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +THERE_MUST_BE_VALUE_IN_XMLVALUE = \uac1d\uccb4\uc758 @XmlValue \ud544\ub4dc\uc5d0 \uac12\uc774 \uc788\uc5b4\uc57c \ud568: {0} + +INCOMPATIBLE_API_VERSION = JAXB 2.1 API jar\uc774 {0}\uc5d0\uc11c \ub85c\ub4dc\ub418\uace0 \uc788\uc9c0\ub9cc {1}\uc758 \uc774 RI\uc5d0\ub294 JAXB 2.2 API jar\uc774 \ud544\uc694\ud569\ub2c8\ub2e4. + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +INCOMPATIBLE_API_VERSION_MUSTANG = JAXB 2.1 API\uac00 \ubd80\ud2b8\uc2a4\ud2b8\ub7a9 \ud074\ub798\uc2a4 \ub85c\ub354\uc5d0\uc11c \ub85c\ub4dc\ub418\uace0 \uc788\uc9c0\ub9cc {1}\uc758 \uc774 RI\uc5d0\ub294 2.2 API\uac00 \ud544\uc694\ud569\ub2c8\ub2e4. \uc778\uc99d\ub41c \ub514\ub809\ud1a0\ub9ac \ubc29\uc2dd\uc744 \uc0ac\uc6a9\ud558\uc5ec \ubd80\ud2b8\uc2a4\ud2b8\ub7a9 \ud074\ub798\uc2a4 \ub85c\ub354\uc5d0 jaxb-api.jar\uc744 \ubc30\uce58\ud558\uc2ed\uc2dc\uc624. http://java.sun.com/j2se/1.6.0/docs/guide/standards/\ub97c \ucc38\uc870\ud558\uc2ed\uc2dc\uc624. + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +RUNNING_WITH_1_0_RUNTIME = {1}\uc5d0\uc11c JAXB 2.0 \ub7f0\ud0c0\uc784\uc744 \uc2e4\ud589\ud558\ub824\uace0 \uc2dc\ub3c4\ud558\uace0 \uc788\uc9c0\ub9cc {0}\uc758 \ud074\ub798\uc2a4 \uacbd\ub85c\uc5d0 \uc774\ubbf8 \uc774\uc804 JAXB 1.0 \ub7f0\ud0c0\uc784\uc774 \uc788\uc2b5\ub2c8\ub2e4. 2.0 \ub7f0\ud0c0\uc784\uc774 \uc81c\ub300\ub85c \uc791\ub3d9\ub418\ub3c4\ub85d JAXB 1.0 \ub7f0\ud0c0\uc784\uc744 \uc81c\uac70\ud558\uc2ed\uc2dc\uc624. + +UNMATCHABLE_ADAPTER = {0} \uc5b4\ub311\ud130\ub294 \ud544\ub4dc \uc720\ud615 {1}\uc5d0 \uc801\uc6a9\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_INSTANTIATION_EXCEPTION = {1} \ud074\ub798\uc2a4\uc5d0 \ub300\ud55c AccessorFactory {0}\uc758 \uc778\uc2a4\ud134\uc2a4\ub97c \uc0dd\uc131\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_ACCESS_EXCEPTION = {1} \ud074\ub798\uc2a4\uc5d0 \ub300\ud55c AccessorFactory {0}\uc758 \uc778\uc2a4\ud134\uc2a4\uc5d0 \uc561\uc138\uc2a4\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +CUSTOM_ACCESSORFACTORY_PROPERTY_ERROR = \uc0ac\uc6a9\uc790 \uc815\uc758 AccessorFactory {0}\uc774(\uac00) \uc18d\uc131 \uc561\uc138\uc2a4 \uc624\ub958\ub97c \ubcf4\uace0\ud558\uace0 \uc788\uc2b5\ub2c8\ub2e4. {1} + +CUSTOM_ACCESSORFACTORY_FIELD_ERROR = \uc0ac\uc6a9\uc790 \uc815\uc758 AccessorFactory {0}\uc774(\uac00) \ud544\ub4dc \uc561\uc138\uc2a4 \uc624\ub958\ub97c \ubcf4\uace0\ud558\uace0 \uc788\uc2b5\ub2c8\ub2e4. {1} + +ANONYMOUS_ARRAY_ITEM = {0}\uc740(\ub294) \ubc30\uc5f4 \uad6c\uc131 \uc694\uc18c \uc720\ud615\uc73c\ub85c \uc0ac\uc6a9\ub418\ubbc0\ub85c \uc775\uba85\uc77c \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +XMLGREGORIANCALENDAR_INVALID = XMLGregorianCalendar \uc720\ud615 {0}\uc5d0 \ub300\ud574 \ubd80\uc801\ud569\ud55c \ud544\ub4dc \uc9d1\ud569\uc774 \uc124\uc815\ub418\uc5c8\uc2b5\ub2c8\ub2e4. + +XMLGREGORIANCALENDAR_SEC = \ucd08\uac00 \uc124\uc815\ub418\uc9c0 \uc54a\uc558\uc2b5\ub2c8\ub2e4. + +XMLGREGORIANCALENDAR_MIN = \ubd84\uc774 \uc124\uc815\ub418\uc9c0 \uc54a\uc558\uc2b5\ub2c8\ub2e4. + +XMLGREGORIANCALENDAR_HR = \uc2dc\uac00 \uc124\uc815\ub418\uc9c0 \uc54a\uc558\uc2b5\ub2c8\ub2e4. + +XMLGREGORIANCALENDAR_DAY = \uc77c\uc774 \uc124\uc815\ub418\uc9c0 \uc54a\uc558\uc2b5\ub2c8\ub2e4. + +XMLGREGORIANCALENDAR_MONTH = \uc6d4\uc774 \uc124\uc815\ub418\uc9c0 \uc54a\uc558\uc2b5\ub2c8\ub2e4. + +XMLGREGORIANCALENDAR_YEAR = \uc5f0\ub3c4\uac00 \uc124\uc815\ub418\uc9c0 \uc54a\uc558\uc2b5\ub2c8\ub2e4. + +XMLGREGORIANCALENDAR_TIMEZONE = \uc2dc\uac04\ub300\uac00 \uc124\uc815\ub418\uc9c0 \uc54a\uc558\uc2b5\ub2c8\ub2e4. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_pt_BR.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_pt_BR.properties new file mode 100644 index 00000000..7be51a2e --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_pt_BR.properties @@ -0,0 +1,136 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +ID_MUST_BE_STRING = A propriedade "{0}" tem uma anota\u00e7\u00e3o XmlID, mas seu tipo n\u00e3o \u00e9 String. + +# {0} - field or field accessor (getter/setter) e.g.: foo.Bar#field has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement OR foo.Bar#getField() has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement +MUTUALLY_EXCLUSIVE_ANNOTATIONS = {0} tem anota\u00e7\u00f5es mutuamente exclusivas @{1} e @{2} + +DUPLICATE_ANNOTATIONS = anota\u00e7\u00e3o @{0} encontrada em dois locais; um \u00e9 suficiente. + +# {0} - class name. e.g.: java.lang.StackTraceElement does not have a no-arg default constructor. +NO_DEFAULT_CONSTRUCTOR = {0} n\u00e3o tem um construtor no-arg default. + +CANT_HANDLE_INTERFACE = {0} \u00e9 uma interface e JAXB n\u00e3o pode tratar interfaces. + +CANT_HANDLE_INNER_CLASS = {0} \u00e9 uma classe interna n\u00e3o est\u00e1tica e JAXB n\u00e3o pode trat\u00e1-la. + +ANNOTATION_ON_WRONG_METHOD = A anota\u00e7\u00e3o JAXB foi colocada em um m\u00e9todo que n\u00e3o \u00e9 uma propriedade JAXB + +GETTER_SETTER_INCOMPATIBLE_TYPE = O tipo de getter \u00e9 {0}, mas o do setter \u00e9 {1}. Eles devem ser iguais. + +DUPLICATE_ENTRY_IN_PROP_ORDER = A propriedade "{0}" aparece mais de uma vez em @XmlType.propOrder + +DUPLICATE_PROPERTIES = H\u00e1 duas propriedades com o nome "{0}" + +XML_ELEMENT_MAPPING_ON_NON_IXMLELEMENT_METHOD = O m\u00e9todo {0} tem @XmlElementMapping nele, mas ele n\u00e3o retorna um subtipo de JAXBElement. + +# {0} - (xsd) type name. e.g. ns:MyType is not bound to a complex type, and therefore illegal as the scope. +SCOPE_IS_NOT_COMPLEXTYPE = {0} n\u00e3o est\u00e1 associado a um tipo complexo e, portanto, o escopo \u00e9 inv\u00e1lido. + +CONFLICTING_XML_ELEMENT_MAPPING = O nome do elemento '{'{0}'}'{1} tem mais de um mapeamento. + +REFERENCE_TO_NON_ELEMENT = A propriedade {0} foi anotada com @XmlReference, mas n\u00e3o se refere a um elemento. + +NON_EXISTENT_ELEMENT_MAPPING = N\u00e3o existe mapeamento de elemento para "{0}":"{1}" + +TWO_ATTRIBUTE_WILDCARDS = {0} tem duas propriedades com a anota\u00e7\u00e3o @XmlAnyAttribute. + +SUPER_CLASS_HAS_WILDCARD = N\u00e3o pode ter @XmlAnyAttribute quando uma classe-base j\u00e1 a possui. + +INVALID_ATTRIBUTE_WILDCARD_TYPE = @XmlAnyAttribute \u00e9 colocado em uma propriedade cujo tipo \u00e9 {0}, mas ele precisa ser atribu\u00eddo a java.util.Map. + +PROPERTY_MISSING_FROM_ORDER = A propriedade {0} est\u00e1 presente, mas n\u00e3o foi especificada em @XmlType.propOrder + +PROPERTY_ORDER_CONTAINS_UNUSED_ENTRY = A propriedade {0} aparece na @XmlType.propOrder, mas essa propriedade n\u00e3o existe. Voc\u00ea quis dizer {1}? + +# {1} - (local) type name e.g.: '#foo' is not a valid value for 'NCName' +INVALID_XML_ENUM_VALUE = "{0}" n\u00e3o \u00e9 um valor v\u00e1lido para {1}. + +NO_IMAGE_WRITER = Nenhum javax.imageio.ImageWriter dispon\u00edvel para o tipo MIME "{0}" especificado + +ILLEGAL_MIME_TYPE = "{0}" n\u00e3o \u00e9 um tipo MIME v\u00e1lido: {1} + +ILLEGAL_ANNOTATION = a anota\u00e7\u00e3o {0} n\u00e3o pode ser colocada aqui + +MULTIPLE_VALUE_PROPERTY = S\u00f3 \u00e9 permitido um @XmlValue por classe, mas duas propriedades foram anotadas com @XmlValue. + +XMLVALUE_IN_DERIVED_TYPE = @XmlValue n\u00e3o \u00e9 permitido em uma classe que deriva outra classe. + +ELEMENT_AND_VALUE_PROPERTY = Se uma classe tiver a propriedade @XmlElement, ela n\u00e3o poder\u00e1 ter a propriedade @XmlValue. + +CONFLICTING_XML_TYPE_MAPPING = Duas classes t\u00eam o mesmo nome do tipo XML "{0}". Use @XmlType.name e @XmlType.namespace para atribuir outros nomes a elas. + +SIMPLE_TYPE_IS_REQUIRED = @XmlAttribute/@XmlValue precisa fazer refer\u00eancia a um tipo Java que \u00e9 mapeado ao texto em XML. + +PROPERTY_COLLISION = A classe tem duas propriedades do mesmo nome "{0}" + +INVALID_IDREF = A propriedade XmlIDREF est\u00e1 fazendo refer\u00eancia a um tipo "{0}" que n\u00e3o tem uma propriedade XmlID. + +INVALID_XML_ELEMENT_REF = @XmlElementRef Inv\u00e1lido: o tipo "{0}" ou qualquer uma de suas subclasses n\u00e3o \u00e9 conhecida neste contexto. + +NO_XML_ELEMENT_DECL = N\u00e3o h\u00e1 ObjectFactory com um @XmlElementDecl para o elemento '{'{0}'}'{1}. + +XML_ELEMENT_WRAPPER_ON_NON_COLLECTION = @XmlElementWrapper s\u00f3 \u00e9 permitido em uma propriedade de coleta, mas "{0}" n\u00e3o \u00e9 uma propriedade de coleta. + +ANNOTATION_NOT_ALLOWED = a anota\u00e7\u00e3o {0} n\u00e3o \u00e9 permitida neste tipo de propriedade. + +XMLLIST_NEEDS_SIMPLETYPE = {0} \u00e9 mapeado para um fragmento XML estruturado (tipo complexo AKA) e, portanto, \u00e9 incompat\u00edvel com @XmlList. + +XMLLIST_ON_SINGLE_PROPERTY = @XmlList n\u00e3o pode ser colocado em uma propriedade de valor \u00fanico + +NO_FACTORY_METHOD = A classe de factory "{0}" n\u00e3o tem o m\u00e9todo de factory de argumentos zero est\u00e1ticos "{1}". + +FACTORY_CLASS_NEEDS_FACTORY_METHOD = XmlType n\u00e3o definiu um m\u00e9todo de factory para a classe de Factory "{0}". + +MISSING_JAXB_PROPERTIES = O pacote "{0}" n\u00e3o encontrou o arquivo jaxb.properties. Voc\u00ea copiou este arquivo do diret\u00f3rio de origem gerado ou incluiu-o no classpath? + +TRANSIENT_FIELD_NOT_BINDABLE = O campo transiente "{0}" n\u00e3o pode ter uma anota\u00e7\u00e3o JAXB. + +THERE_MUST_BE_VALUE_IN_XMLVALUE = O objeto deve ter algum valor no campo @XmlValue: {0} + +INCOMPATIBLE_API_VERSION = O jar da API do JAXB 2.1 est\u00e1 sendo carregado (de {0}), mas este RI (de {1}) requer o jar da API do JAXB 2.2. + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +INCOMPATIBLE_API_VERSION_MUSTANG = A API do JAXB 2.1 est\u00e1 sendo carregada do carregador de classes de bootstrap, mas este RI (de {1}) precisa da API 2.2. Use o mecanismo do diret\u00f3rio endossado para colocar jaxb-api.jar no carregador de classes de bootstrap. (Consulte http://java.sun.com/j2se/1.6.0/docs/guide/standards/) + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +RUNNING_WITH_1_0_RUNTIME = Voc\u00ea est\u00e1 tentando executar o runtime do JAXB 2.0 (de {1}) mas voc\u00ea tem o runtime do JAXB 1.0 antigo no classpath (em {0}). Remova o runtime do JAXB 1.0 do runtime do 2.0 para funcionar corretamente. + +UNMATCHABLE_ADAPTER = O adaptador {0} n\u00e3o \u00e9 aplic\u00e1vel ao tipo de campo {1}. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_INSTANTIATION_EXCEPTION = N\u00e3o \u00e9 poss\u00edvel criar a inst\u00e2ncia de AccessorFactory {0} para a classe {1}. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_ACCESS_EXCEPTION = N\u00e3o \u00e9 poss\u00edvel acessar a inst\u00e2ncia de AccessorFactory {0} para a classe {1}. + +CUSTOM_ACCESSORFACTORY_PROPERTY_ERROR = A AccessorFactory {0} personalizada est\u00e1 reportando um erro ao acessar a propriedade. {1} + +CUSTOM_ACCESSORFACTORY_FIELD_ERROR = A AccessorFactory {0} personalizada est\u00e1 reportando um erro ao acessar um campo. {1} + +ANONYMOUS_ARRAY_ITEM = {0} foi usado como um tipo de componente do array; portanto, n\u00e3o pode ser an\u00f4nimo. + +XMLGREGORIANCALENDAR_INVALID = Conjunto inv\u00e1lido de campos definido para o tipo XMLGregorianCalendar {0}. + +XMLGREGORIANCALENDAR_SEC = Segundos n\u00e3o definidos. + +XMLGREGORIANCALENDAR_MIN = Minutos n\u00e3o definidos. + +XMLGREGORIANCALENDAR_HR = Hora n\u00e3o definida. + +XMLGREGORIANCALENDAR_DAY = Dia n\u00e3o definido. + +XMLGREGORIANCALENDAR_MONTH = M\u00eas n\u00e3o definido. + +XMLGREGORIANCALENDAR_YEAR = Ano n\u00e3o definido. + +XMLGREGORIANCALENDAR_TIMEZONE = Fuso hor\u00e1rio n\u00e3o definido. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_zh_CN.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_zh_CN.properties new file mode 100644 index 00000000..c17a0ac3 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_zh_CN.properties @@ -0,0 +1,136 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +ID_MUST_BE_STRING = \u5c5e\u6027 "{0}" \u5177\u6709 XmlID \u6ce8\u91ca, \u4f46\u5b83\u4e0d\u662f\u5b57\u7b26\u4e32\u7c7b\u578b\u3002 + +# {0} - field or field accessor (getter/setter) e.g.: foo.Bar#field has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement OR foo.Bar#getField() has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement +MUTUALLY_EXCLUSIVE_ANNOTATIONS = {0}\u5177\u6709\u4e92\u76f8\u6392\u65a5\u7684\u6ce8\u91ca @{1} \u548c @{2} + +DUPLICATE_ANNOTATIONS = \u53d1\u73b0 @{0} \u6ce8\u91ca\u4f4d\u4e8e\u4e24\u4e2a\u4f4d\u7f6e; \u6709\u4e00\u4e2a\u4f4d\u7f6e\u5c31\u8db3\u591f\u3002 + +# {0} - class name. e.g.: java.lang.StackTraceElement does not have a no-arg default constructor. +NO_DEFAULT_CONSTRUCTOR = {0}\u6ca1\u6709\u65e0\u53c2\u6570\u9ed8\u8ba4\u6784\u9020\u5668\u3002 + +CANT_HANDLE_INTERFACE = {0}\u662f\u63a5\u53e3, \u800c JAXB \u65e0\u6cd5\u5904\u7406\u63a5\u53e3\u3002 + +CANT_HANDLE_INNER_CLASS = {0}\u662f\u975e\u9759\u6001\u5185\u90e8\u7c7b, \u800c JAXB \u65e0\u6cd5\u5904\u7406\u8fd9\u4e9b\u7c7b\u3002 + +ANNOTATION_ON_WRONG_METHOD = \u5728\u5176\u4e2d\u653e\u5165 JAXB \u6ce8\u91ca\u7684\u65b9\u6cd5\u4e0d\u662f JAXB \u5c5e\u6027 + +GETTER_SETTER_INCOMPATIBLE_TYPE = getter \u7684\u7c7b\u578b\u4e3a{0}, \u800c setter \u7684\u7c7b\u578b\u4e3a{1}\u3002\u5b83\u4eec\u7684\u7c7b\u578b\u5fc5\u987b\u76f8\u540c\u3002 + +DUPLICATE_ENTRY_IN_PROP_ORDER = \u5c5e\u6027 "{0}" \u5728 @XmlType.propOrder \u4e2d\u51fa\u73b0\u591a\u6b21 + +DUPLICATE_PROPERTIES = \u6709\u4e24\u4e2a\u540d\u4e3a "{0}" \u7684\u5c5e\u6027 + +XML_ELEMENT_MAPPING_ON_NON_IXMLELEMENT_METHOD = {0}\u65b9\u6cd5\u5177\u6709 @XmlElementMapping, \u4f46\u8be5\u65b9\u6cd5\u672a\u8fd4\u56de JAXBElement \u7684\u5b50\u7c7b\u578b\u3002 + +# {0} - (xsd) type name. e.g. ns:MyType is not bound to a complex type, and therefore illegal as the scope. +SCOPE_IS_NOT_COMPLEXTYPE = {0}\u672a\u7ed1\u5b9a\u5230\u590d\u6742\u7c7b\u578b, \u56e0\u6b64\u4f5c\u4e3a\u8303\u56f4\u65f6\u662f\u975e\u6cd5\u7684\u3002 + +CONFLICTING_XML_ELEMENT_MAPPING = \u5143\u7d20\u540d\u79f0 '{'{0}'}'{1}\u5177\u6709\u591a\u4e2a\u6620\u5c04\u3002 + +REFERENCE_TO_NON_ELEMENT = \u5c5e\u6027{0}\u5e26\u6709 @XmlReference \u6ce8\u91ca, \u4f46\u672a\u5f15\u7528\u5143\u7d20\u3002 + +NON_EXISTENT_ELEMENT_MAPPING = "{0}":"{1}" \u6ca1\u6709\u5143\u7d20\u6620\u5c04 + +TWO_ATTRIBUTE_WILDCARDS = {0}\u5177\u6709\u4e24\u4e2a\u5e26\u6709 @XmlAnyAttribute \u6ce8\u91ca\u7684\u5c5e\u6027\u3002 + +SUPER_CLASS_HAS_WILDCARD = \u5982\u679c\u57fa\u7c7b\u5df2\u6709 @XmlAnyAttribute, \u5219\u4e0d\u80fd\u518d\u6709\u8be5\u6ce8\u91ca\u3002 + +INVALID_ATTRIBUTE_WILDCARD_TYPE = @XmlAnyAttribute \u653e\u7f6e\u5728\u7c7b\u578b\u4e3a{0}\u7684\u5c5e\u6027\u4e0a, \u4f46\u5b83\u5fc5\u987b\u53ef\u5206\u914d\u7ed9 java.util.Map\u3002 + +PROPERTY_MISSING_FROM_ORDER = \u5c5e\u6027{0}\u5df2\u5b58\u5728, \u4f46\u672a\u5728 @XmlType.propOrder \u4e2d\u6307\u5b9a + +PROPERTY_ORDER_CONTAINS_UNUSED_ENTRY = \u5c5e\u6027{0}\u51fa\u73b0\u5728 @XmlType.propOrder \u4e2d, \u4f46\u4e0d\u5b58\u5728\u8fd9\u79cd\u5c5e\u6027\u3002\u60a8\u662f\u5426\u6253\u7b97{1}? + +# {1} - (local) type name e.g.: '#foo' is not a valid value for 'NCName' +INVALID_XML_ENUM_VALUE = "{0}" \u4e0d\u662f{1}\u7684\u6709\u6548\u503c\u3002 + +NO_IMAGE_WRITER = \u6307\u5b9a MIME \u7c7b\u578b "{0}" \u6ca1\u6709\u53ef\u7528\u7684 javax.imageio.ImageWriter + +ILLEGAL_MIME_TYPE = "{0}" \u4e0d\u662f\u6709\u6548\u7684 MIME \u7c7b\u578b: {1} + +ILLEGAL_ANNOTATION = \u4e0d\u80fd\u5728\u6b64\u5904\u653e\u7f6e{0}\u6ce8\u91ca + +MULTIPLE_VALUE_PROPERTY = \u6bcf\u4e2a\u7c7b\u53ea\u5141\u8bb8\u6709\u4e00\u4e2a @XmlValue, \u4f46\u6709\u4e24\u4e2a\u5c5e\u6027\u5e26\u6709 @XmlValue \u6ce8\u91ca\u3002 + +XMLVALUE_IN_DERIVED_TYPE = \u6d3e\u751f\u5176\u4ed6\u7c7b\u7684\u7c7b\u4e0d\u5141\u8bb8\u6709 @XmlValue\u3002 + +ELEMENT_AND_VALUE_PROPERTY = \u5982\u679c\u7c7b\u5177\u6709 @XmlElement \u5c5e\u6027, \u5219\u4e0d\u80fd\u5177\u6709 @XmlValue \u5c5e\u6027\u3002 + +CONFLICTING_XML_TYPE_MAPPING = \u4e24\u4e2a\u7c7b\u5177\u6709\u76f8\u540c\u7684 XML \u7c7b\u578b\u540d\u79f0 "{0}"\u3002\u8bf7\u4f7f\u7528 @XmlType.name \u548c @XmlType.namespace \u4e3a\u7c7b\u5206\u914d\u4e0d\u540c\u7684\u540d\u79f0\u3002 + +SIMPLE_TYPE_IS_REQUIRED = @XmlAttribute/@XmlValue \u5fc5\u987b\u5f15\u7528\u6620\u5c04\u5230 XML \u4e2d\u7684\u6587\u672c\u7684 Java \u7c7b\u578b\u3002 + +PROPERTY_COLLISION = \u7c7b\u7684\u4e24\u4e2a\u5c5e\u6027\u5177\u6709\u76f8\u540c\u540d\u79f0 "{0}" + +INVALID_IDREF = XmlIDREF \u5c5e\u6027\u5f15\u7528\u4e86\u7c7b\u578b "{0}", \u4f46\u6ca1\u6709 XmlID \u5c5e\u6027\u3002 + +INVALID_XML_ELEMENT_REF = @XmlElementRef \u65e0\u6548: \u7c7b\u578b "{0}" \u6216\u5176\u4efb\u610f\u5b50\u7c7b\u5bf9\u6b64\u4e0a\u4e0b\u6587\u662f\u672a\u77e5\u7684\u3002 + +NO_XML_ELEMENT_DECL = \u5143\u7d20 '{'{0}'}'{1}\u4e0d\u5b58\u5728\u5177\u6709 @XmlElementDecl \u7684 ObjectFactory\u3002 + +XML_ELEMENT_WRAPPER_ON_NON_COLLECTION = @XmlElementWrapper \u53ea\u80fd\u4f4d\u4e8e\u96c6\u5408\u5c5e\u6027\u4e0a, \u800c "{0}" \u4e0d\u662f\u96c6\u5408\u5c5e\u6027\u3002 + +ANNOTATION_NOT_ALLOWED = \u6b64\u7c7b\u578b\u5c5e\u6027\u4e0a\u4e0d\u5141\u8bb8\u6709{0}\u6ce8\u91ca\u3002 + +XMLLIST_NEEDS_SIMPLETYPE = {0}\u6620\u5c04\u5230\u7ed3\u6784\u5316 XML \u7247\u6bb5 (\u5373\u590d\u6742\u7c7b\u578b), \u56e0\u6b64\u4e0e @XmlList \u4e0d\u517c\u5bb9\u3002 + +XMLLIST_ON_SINGLE_PROPERTY = @XmlList \u4e0d\u80fd\u653e\u7f6e\u5728\u5355\u503c\u5c5e\u6027\u4e0a + +NO_FACTORY_METHOD = \u5de5\u5382\u7c7b "{0}" \u6ca1\u6709\u9759\u6001\u96f6\u53c2\u6570\u5de5\u5382\u65b9\u6cd5 "{1}"\u3002 + +FACTORY_CLASS_NEEDS_FACTORY_METHOD = XmlType \u6ca1\u6709\u4e3a\u5de5\u5382\u7c7b "{0}" \u5b9a\u4e49\u5de5\u5382\u65b9\u6cd5\u3002 + +MISSING_JAXB_PROPERTIES = \u7a0b\u5e8f\u5305 "{0}" \u7f3a\u5c11 jaxb.properties \u6587\u4ef6\u3002\u662f\u5426\u5df2\u4ece\u751f\u6210\u7684\u6e90\u76ee\u5f55\u590d\u5236\u6b64\u6587\u4ef6\u6216\u5df2\u5c06\u6b64\u6587\u4ef6\u5305\u542b\u5728\u7c7b\u8def\u5f84\u4e2d? + +TRANSIENT_FIELD_NOT_BINDABLE = \u4e34\u65f6\u5b57\u6bb5 "{0}" \u4e0d\u80fd\u6709\u4efb\u4f55 JAXB \u6ce8\u91ca\u3002 + +THERE_MUST_BE_VALUE_IN_XMLVALUE = \u5bf9\u8c61\u7684 @XmlValue \u5b57\u6bb5\u4e2d\u5fc5\u987b\u5305\u542b\u67d0\u4e00\u503c: {0} + +INCOMPATIBLE_API_VERSION = \u6b63\u5728\u52a0\u8f7d (\u4ece{0}) JAXB 2.1 API jar, \u4f46\u6b64 RI (\u6765\u81ea{1}) \u9700\u8981 JAXB 2.2 API jar\u3002 + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +INCOMPATIBLE_API_VERSION_MUSTANG = \u6b63\u5728\u4ece\u5f15\u5bfc\u7c7b\u52a0\u8f7d\u5668\u52a0\u8f7d JAXB 2.1 API, \u4f46\u6b64 RI (\u6765\u81ea{1}) \u9700\u8981 2.2 API\u3002\u8bf7\u4f7f\u7528\u6388\u6743\u76ee\u5f55\u673a\u5236\u5c06 jaxb-api.jar \u653e\u5728\u5f15\u5bfc\u7c7b\u52a0\u8f7d\u5668\u4e2d\u3002(\u8bf7\u53c2\u9605 http://java.sun.com/j2se/1.6.0/docs/guide/standards/) + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +RUNNING_WITH_1_0_RUNTIME = \u60a8\u6b63\u5728\u5c1d\u8bd5\u8fd0\u884c JAXB 2.0 \u8fd0\u884c\u65f6 (\u4ece{1}), \u4f46\u7c7b\u8def\u5f84 (\u4f4d\u4e8e{0}\u4e2d) \u4e2d\u5148\u524d\u5305\u542b\u65e7 JAXB 1.0 \u8fd0\u884c\u65f6\u3002\u8981\u4f7f 2.0 \u8fd0\u884c\u65f6\u6b63\u5e38\u5de5\u4f5c, \u8bf7\u5220\u9664 JAXB 1.0 \u8fd0\u884c\u65f6\u3002 + +UNMATCHABLE_ADAPTER = \u9002\u914d\u5668{0}\u4e0d\u9002\u7528\u4e8e\u5b57\u6bb5\u7c7b\u578b{1}\u3002 + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_INSTANTIATION_EXCEPTION = \u65e0\u6cd5\u4e3a\u7c7b{1}\u521b\u5efa AccessorFactory {0}\u7684\u5b9e\u4f8b\u3002 + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_ACCESS_EXCEPTION = \u65e0\u6cd5\u8bbf\u95ee\u7c7b{1}\u7684 AccessorFactory {0}\u7684\u5b9e\u4f8b\u3002 + +CUSTOM_ACCESSORFACTORY_PROPERTY_ERROR = \u8bbf\u95ee\u5c5e\u6027\u65f6\u5b9a\u5236 AccessorFactory {0}\u62a5\u544a\u9519\u8bef\u3002{1} + +CUSTOM_ACCESSORFACTORY_FIELD_ERROR = \u8bbf\u95ee\u5b57\u6bb5\u65f6\u5b9a\u5236 AccessorFactory {0}\u62a5\u544a\u9519\u8bef\u3002{1} + +ANONYMOUS_ARRAY_ITEM = {0}\u7528\u4f5c\u6570\u7ec4\u7ec4\u4ef6\u7c7b\u578b, \u56e0\u6b64\u4e0d\u80fd\u662f\u533f\u540d\u7684\u3002 + +XMLGREGORIANCALENDAR_INVALID = \u4e3a XMLGregorianCalendar \u7c7b\u578b{0}\u8bbe\u7f6e\u7684\u5b57\u6bb5\u96c6\u65e0\u6548\u3002 + +XMLGREGORIANCALENDAR_SEC = \u672a\u8bbe\u7f6e\u79d2\u3002 + +XMLGREGORIANCALENDAR_MIN = \u672a\u8bbe\u7f6e\u5206\u949f\u3002 + +XMLGREGORIANCALENDAR_HR = \u672a\u8bbe\u7f6e\u5c0f\u65f6\u3002 + +XMLGREGORIANCALENDAR_DAY = \u672a\u8bbe\u7f6e\u5929\u3002 + +XMLGREGORIANCALENDAR_MONTH = \u672a\u8bbe\u7f6e\u6708\u3002 + +XMLGREGORIANCALENDAR_YEAR = \u672a\u8bbe\u7f6e\u5e74\u3002 + +XMLGREGORIANCALENDAR_TIMEZONE = \u672a\u8bbe\u7f6e\u65f6\u533a\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_zh_TW.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_zh_TW.properties new file mode 100644 index 00000000..b005cc0f --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/Messages_zh_TW.properties @@ -0,0 +1,136 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + + +ID_MUST_BE_STRING = \u7279\u6027 "{0}" \u542b\u6709 XmlID \u8a3b\u89e3, \u4f46\u5176\u985e\u578b\u4e0d\u662f\u300c\u5b57\u4e32\u300d. + +# {0} - field or field accessor (getter/setter) e.g.: foo.Bar#field has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement OR foo.Bar#getField() has mutually exclusive annotations @javax.xml.bind.annotation.XmlAttribute and @javax.xml.bind.annotation.XmlElement +MUTUALLY_EXCLUSIVE_ANNOTATIONS = {0} \u542b\u6709\u4e92\u65a5\u7684\u8a3b\u89e3 @{1} \u8207 @{2} + +DUPLICATE_ANNOTATIONS = \u5728\u5169\u500b\u4e0d\u540c\u4f4d\u7f6e\u767c\u73fe @{0} \u8a3b\u89e3; \u53ea\u9700\u8981\u4e00\u500b\u8a3b\u89e3. + +# {0} - class name. e.g.: java.lang.StackTraceElement does not have a no-arg default constructor. +NO_DEFAULT_CONSTRUCTOR = {0} \u6c92\u6709\u7121\u5f15\u6578\u7684\u9810\u8a2d\u5efa\u69cb\u5b50. + +CANT_HANDLE_INTERFACE = {0} \u662f\u4ecb\u9762, \u800c JAXB \u7121\u6cd5\u8655\u7406\u4ecb\u9762. + +CANT_HANDLE_INNER_CLASS = {0} \u662f\u975e\u975c\u614b\u5167\u90e8\u985e\u5225, \u800c JAXB \u7121\u6cd5\u8655\u7406\u90a3\u4e9b\u985e\u5225. + +ANNOTATION_ON_WRONG_METHOD = JAXB \u8a3b\u89e3\u653e\u7f6e\u65bc\u975e JAXB \u7279\u6027\u7684\u65b9\u6cd5\u4e2d + +GETTER_SETTER_INCOMPATIBLE_TYPE = getter \u7684\u985e\u578b\u70ba {0}, \u4f46 setter \u7684\u985e\u578b\u70ba {1}. \u5169\u8005\u985e\u578b\u5fc5\u9808\u76f8\u540c. + +DUPLICATE_ENTRY_IN_PROP_ORDER = \u7279\u6027 "{0}" \u5728 @XmlType.propOrder \u4e2d\u51fa\u73fe\u4e00\u6b21\u4ee5\u4e0a + +DUPLICATE_PROPERTIES = \u6709\u5169\u500b\u540d\u7a31\u70ba "{0}" \u7684\u7279\u6027 + +XML_ELEMENT_MAPPING_ON_NON_IXMLELEMENT_METHOD = {0} \u65b9\u6cd5\u4e2d\u542b\u6709 @XmlElementMapping, \u4f46\u672a\u50b3\u56de\u5b50\u985e\u578b JAXBElement. + +# {0} - (xsd) type name. e.g. ns:MyType is not bound to a complex type, and therefore illegal as the scope. +SCOPE_IS_NOT_COMPLEXTYPE = {0} \u672a\u9023\u7d50\u81f3\u8907\u96dc\u985e\u578b, \u56e0\u6b64\u4e0d\u662f\u6709\u6548\u7684\u7bc4\u570d. + +CONFLICTING_XML_ELEMENT_MAPPING = \u5143\u7d20\u540d\u7a31 '{'{0}'}'{1} \u6709\u4e00\u500b\u4ee5\u4e0a\u7684\u5c0d\u61c9. + +REFERENCE_TO_NON_ELEMENT = \u7279\u6027 {0} \u5df2\u4f7f\u7528 @XmlReference \u52a0\u8a3b, \u4f46\u672a\u53c3\u7167\u5143\u7d20. + +NON_EXISTENT_ELEMENT_MAPPING = "{0}":"{1}" \u6c92\u6709\u5143\u7d20\u5c0d\u61c9 + +TWO_ATTRIBUTE_WILDCARDS = {0} \u6709\u5169\u500b\u7279\u6027\u542b\u6709 @XmlAnyAttribute \u8a3b\u89e3. + +SUPER_CLASS_HAS_WILDCARD = \u7576\u57fa\u790e\u985e\u5225\u5df2\u5305\u542b @XmlAnyAttribute \u6642, \u5c31\u4e0d\u80fd\u518d\u4f7f\u7528\u5b83. + +INVALID_ATTRIBUTE_WILDCARD_TYPE = @XmlAnyAttribute \u653e\u7f6e\u65bc\u985e\u578b\u70ba {0} \u7684\u7279\u6027\u4e2d, \u4f46\u5176\u5fc5\u9808\u53ef\u6307\u5b9a\u7d66 java.util.Map. + +PROPERTY_MISSING_FROM_ORDER = \u7279\u6027 {0} \u5b58\u5728, \u4f46\u672a\u65bc @XmlType.propOrder \u4e2d\u6307\u5b9a + +PROPERTY_ORDER_CONTAINS_UNUSED_ENTRY = \u7279\u6027 {0} \u986f\u793a\u65bc @XmlType.propOrder \u4e2d, \u4f46\u6b64\u7279\u6027\u4e0d\u5b58\u5728. \u4e5f\u8a31\u60a8\u6307\u7684\u662f {1}? + +# {1} - (local) type name e.g.: '#foo' is not a valid value for 'NCName' +INVALID_XML_ENUM_VALUE = "{0}" \u4e0d\u662f {1} \u7684\u6709\u6548\u503c. + +NO_IMAGE_WRITER = \u6307\u5b9a\u7684 MIME \u985e\u578b "{0}" \u6c92\u6709\u53ef\u7528\u7684 javax.imageio.ImageWriter + +ILLEGAL_MIME_TYPE = "{0}" \u4e0d\u662f\u6709\u6548\u7684 MIME \u985e\u578b: {1} + +ILLEGAL_ANNOTATION = {0} \u8a3b\u89e3\u4e0d\u53ef\u653e\u7f6e\u65bc\u6b64\u8655 + +MULTIPLE_VALUE_PROPERTY = \u4e00\u500b\u985e\u5225\u53ea\u80fd\u6709\u4e00\u500b @XmlValue, \u4f46\u6709\u5169\u500b\u7279\u6027\u5747\u4f7f\u7528 @XmlValue \u8a3b\u89e3. + +XMLVALUE_IN_DERIVED_TYPE = \u6703\u884d\u751f\u5176\u4ed6\u985e\u5225\u7684\u985e\u5225, \u4e0d\u5141\u8a31\u4f7f\u7528 @XmlValue. + +ELEMENT_AND_VALUE_PROPERTY = \u82e5\u985e\u5225\u5305\u542b @XmlElement \u7279\u6027, \u5247\u4e0d\u5f97\u4f7f\u7528 @XmlValue \u7279\u6027. + +CONFLICTING_XML_TYPE_MAPPING = \u6709\u5169\u500b\u985e\u5225\u542b\u6709\u76f8\u540c\u7684 XML \u985e\u578b\u540d\u7a31 "{0}". \u8acb\u4f7f\u7528 @XmlType.name \u8207 @XmlType.namespace \u70ba\u5b83\u5011\u6307\u5b9a\u4e0d\u540c\u7684\u540d\u7a31. + +SIMPLE_TYPE_IS_REQUIRED = @XmlAttribute/@XmlValue \u5fc5\u9808\u53c3\u7167\u5c0d\u61c9\u81f3 XML \u4e2d\u6587\u5b57\u7684 Java \u985e\u578b. + +PROPERTY_COLLISION = \u985e\u5225\u6709\u76f8\u540c\u540d\u7a31 "{0}" \u7684\u5169\u500b\u7279\u6027 + +INVALID_IDREF = XmlIDREF \u7279\u6027\u53c3\u7167\u7684\u985e\u578b "{0}" \u672a\u5305\u542b XmlID \u7279\u6027. + +INVALID_XML_ELEMENT_REF = \u7121\u6548\u7684 @XmlElementRef : \u6b64\u76f8\u95dc\u8cc7\u8a0a\u74b0\u5883\u4e0d\u8a8d\u5f97\u985e\u578b "{0}" \u6216\u5176\u4efb\u4e00\u5b50\u985e\u5225. + +NO_XML_ELEMENT_DECL = \u6c92\u6709\u542b\u6709\u5143\u7d20 '{'{0}'}'{1} \u4e4b @XmlElementDecl \u7684 ObjectFactory. + +XML_ELEMENT_WRAPPER_ON_NON_COLLECTION = \u53ea\u80fd\u5728\u96c6\u5408\u7279\u6027\u4e2d\u4f7f\u7528 @XmlElementWrapper, \u4f46 "{0}" \u4e0d\u662f\u96c6\u5408\u7279\u6027. + +ANNOTATION_NOT_ALLOWED = \u4e0d\u5141\u8a31\u5728\u6b64\u7a2e\u7279\u6027\u4e2d\u4f7f\u7528 {0} \u8a3b\u89e3. + +XMLLIST_NEEDS_SIMPLETYPE = {0} \u5c0d\u61c9\u81f3\u7d50\u69cb\u5316\u7684 XML \u7247\u6bb5 (\u4ea6\u7a31\u70ba\u8907\u96dc\u985e\u578b), \u56e0\u6b64\u8207 @XmlList \u4e0d\u76f8\u5bb9. + +XMLLIST_ON_SINGLE_PROPERTY = @XmlList \u7121\u6cd5\u653e\u7f6e\u65bc\u55ae\u4e00\u503c\u7279\u6027\u4e2d + +NO_FACTORY_METHOD = \u8655\u7406\u7ad9\u985e\u5225 "{0}" \u672a\u5305\u542b\u975c\u614b\u96f6\u5f15\u6578\u8655\u7406\u7ad9\u65b9\u6cd5 "{1}". + +FACTORY_CLASS_NEEDS_FACTORY_METHOD = XmlType \u672a\u5b9a\u7fa9\u8655\u7406\u7ad9\u985e\u5225 "{0}" \u7684\u8655\u7406\u7ad9\u65b9\u6cd5. + +MISSING_JAXB_PROPERTIES = \u5957\u88dd\u7a0b\u5f0f "{0}" \u907a\u6f0f jaxb.properties \u6a94\u6848. \u60a8\u662f\u5426\u5df2\u5f9e\u7522\u751f\u7684\u4f86\u6e90\u76ee\u9304\u4e2d\u8907\u88fd\u8a72\u6a94\u6848, \u6216\u5c07\u5176\u5305\u542b\u65bc\u985e\u5225\u8def\u5f91\u4e2d? + +TRANSIENT_FIELD_NOT_BINDABLE = \u77ac\u6642\u6b04 "{0}" \u4e0d\u80fd\u5305\u542b\u4efb\u4f55 JAXB \u8a3b\u89e3. + +THERE_MUST_BE_VALUE_IN_XMLVALUE = \u7269\u4ef6\u7684 @XmlValue \u6b04\u4f4d: {0} \u4e2d\u5fc5\u9808\u542b\u6709\u503c + +INCOMPATIBLE_API_VERSION = \u6b63\u5728\u8f09\u5165 JAXB 2.1 API jar (\u5f9e {0}), \u4f46\u6b64 RI (\u4f86\u81ea {1}) \u9700\u8981 JAXB 2.2 API jar. + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +INCOMPATIBLE_API_VERSION_MUSTANG = \u6b63\u5728\u5f9e\u555f\u52d5\u5b89\u88dd\u985e\u5225\u8f09\u5165\u5668\u8f09\u5165 JAXB 2.1 API, \u4f46\u6b64 RI (\u4f86\u81ea {1}) \u9700\u8981 2.2 API. \u8acb\u4f7f\u7528\u8a8d\u53ef\u7684\u76ee\u9304\u6a5f\u5236\u4ee5\u5c07 jaxb-api.jar \u653e\u7f6e\u65bc\u555f\u52d5\u5b89\u88dd\u985e\u5225\u8f09\u5165\u5668\u4e2d. (\u8acb\u53c3\u95b1 http://java.sun.com/j2se/1.6.0/docs/guide/standards/) + +# {0}, {1} - absolute class location e.g. JAXB 2.1 API is being loaded from the bootstrap classloader, but this RI (from jar:file:/c:/foo/bar/jaxb-impl.jar!/com/sun/xml/bind/v2/model/impl/ModelBuilder.class) needs 2.2 API. +RUNNING_WITH_1_0_RUNTIME = \u60a8\u6b63\u5728\u5617\u8a66\u57f7\u884c JAXB 2.0 \u7a0b\u5f0f\u5be6\u969b\u57f7\u884c (\u5f9e {1}), \u4f46\u5148\u524d\u65bc\u985e\u5225\u8def\u5f91\u4e2d\u5df2\u7d93\u6709\u820a\u7684 JAXB 1.0 \u7a0b\u5f0f\u5be6\u969b\u57f7\u884c (\u4f4d\u65bc {0}). \u8acb\u79fb\u9664 JAXB 1.0 \u7a0b\u5f0f\u5be6\u969b\u57f7\u884c, \u4f7f 2.0 \u7a0b\u5f0f\u5be6\u969b\u57f7\u884c\u80fd\u9806\u5229\u904b\u4f5c. + +UNMATCHABLE_ADAPTER = \u8f49\u63a5\u5668 {0} \u4e0d\u9069\u7528\u65bc\u6b04\u4f4d\u985e\u578b {1}. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_INSTANTIATION_EXCEPTION = \u7121\u6cd5\u5efa\u7acb\u985e\u5225 {1} \u4e4b AccessorFactory \u7684\u57f7\u884c\u8655\u7406 {0}. + +# {0} - com.sun.xml.bind.XmlAccessorFactory, {1} - class name +ACCESSORFACTORY_ACCESS_EXCEPTION = \u7121\u6cd5\u5b58\u53d6\u985e\u5225 {1} \u4e4b AccessorFactory \u7684\u57f7\u884c\u8655\u7406 {0}. + +CUSTOM_ACCESSORFACTORY_PROPERTY_ERROR = \u81ea\u8a02\u7684 AccessorFactory {0} \u6b63\u5728\u56de\u5831\u5b58\u53d6\u7279\u6027\u7684\u932f\u8aa4. {1} + +CUSTOM_ACCESSORFACTORY_FIELD_ERROR = \u81ea\u8a02\u7684 AccessorFactory {0} \u6b63\u5728\u56de\u5831\u5b58\u53d6\u6b04\u4f4d\u7684\u932f\u8aa4. {1} + +ANONYMOUS_ARRAY_ITEM = {0} \u6703\u7576\u4f5c\u9663\u5217\u5143\u4ef6\u985e\u578b\u4f7f\u7528, \u56e0\u6b64\u4e0d\u53ef\u4ee5\u533f\u540d. + +XMLGREGORIANCALENDAR_INVALID = XMLGregorianCalendar \u985e\u578b {0} \u8a2d\u5b9a\u4e86\u7121\u6548\u7684\u6b04\u4f4d\u96c6. + +XMLGREGORIANCALENDAR_SEC = \u672a\u8a2d\u5b9a\u300c\u79d2\u300d. + +XMLGREGORIANCALENDAR_MIN = \u672a\u8a2d\u5b9a\u300c\u5206\u300d. + +XMLGREGORIANCALENDAR_HR = \u672a\u8a2d\u5b9a\u300c\u6642\u300d. + +XMLGREGORIANCALENDAR_DAY = \u672a\u8a2d\u5b9a\u300c\u65e5\u671f\u300d. + +XMLGREGORIANCALENDAR_MONTH = \u672a\u8a2d\u5b9a\u300c\u6708\u4efd\u300d. + +XMLGREGORIANCALENDAR_YEAR = \u672a\u8a2d\u5b9a\u300c\u5e74\u4efd\u300d. + +XMLGREGORIANCALENDAR_TIMEZONE = \u672a\u8a2d\u5b9a\u300c\u6642\u5340\u300d. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/ModelBuilder$1.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/ModelBuilder$1.class new file mode 100644 index 00000000..6d1b8a8f Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/ModelBuilder$1.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/ModelBuilder.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/ModelBuilder.class new file mode 100644 index 00000000..b859cc17 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/ModelBuilder.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/ModelBuilderI.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/ModelBuilderI.class new file mode 100644 index 00000000..1dcf7a86 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/ModelBuilderI.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/PropertyInfoImpl$1.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/PropertyInfoImpl$1.class new file mode 100644 index 00000000..5b637264 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/PropertyInfoImpl$1.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/PropertyInfoImpl.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/PropertyInfoImpl.class new file mode 100644 index 00000000..da2e60b4 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/PropertyInfoImpl.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/PropertySeed.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/PropertySeed.class new file mode 100644 index 00000000..baf48c9d Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/PropertySeed.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/ReferencePropertyInfoImpl.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/ReferencePropertyInfoImpl.class new file mode 100644 index 00000000..6a9a031e Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/ReferencePropertyInfoImpl.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RegistryInfoImpl.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RegistryInfoImpl.class new file mode 100644 index 00000000..49501adb Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RegistryInfoImpl.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeAnyTypeImpl.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeAnyTypeImpl.class new file mode 100644 index 00000000..89ea7fd2 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeAnyTypeImpl.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeArrayInfoImpl.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeArrayInfoImpl.class new file mode 100644 index 00000000..ba7dd497 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeArrayInfoImpl.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeAttributePropertyInfoImpl.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeAttributePropertyInfoImpl.class new file mode 100644 index 00000000..d203eba9 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeAttributePropertyInfoImpl.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$1.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$1.class new file mode 100644 index 00000000..f355ea7a Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$1.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$10$1.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$10$1.class new file mode 100644 index 00000000..f355d8e9 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$10$1.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$10.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$10.class new file mode 100644 index 00000000..ecfbbf92 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$10.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$11.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$11.class new file mode 100644 index 00000000..cf2b6af3 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$11.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$12.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$12.class new file mode 100644 index 00000000..f1a09de3 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$12.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$13.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$13.class new file mode 100644 index 00000000..f43e1e69 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$13.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$14.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$14.class new file mode 100644 index 00000000..6f8f6f21 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$14.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$15.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$15.class new file mode 100644 index 00000000..bbfacde7 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$15.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$16.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$16.class new file mode 100644 index 00000000..bc2570b0 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$16.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$17.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$17.class new file mode 100644 index 00000000..d714fa0e Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$17.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$18.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$18.class new file mode 100644 index 00000000..015fb867 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$18.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$19.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$19.class new file mode 100644 index 00000000..921598ee Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$19.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$2.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$2.class new file mode 100644 index 00000000..262346c5 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$2.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$20.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$20.class new file mode 100644 index 00000000..b7c2075f Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$20.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$21.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$21.class new file mode 100644 index 00000000..e5f25026 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$21.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$22.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$22.class new file mode 100644 index 00000000..759106d5 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$22.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$23.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$23.class new file mode 100644 index 00000000..de31842c Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$23.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/model/impl/RuntimeBuiltinLeafInfoImpl$24.class 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+1,95 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Wrapped into an Exception. Not concatenated with any other string. +NOT_MARSHALLABLE = \ + the object parameter to marshal() is not marshallable + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_RESULT = \ + unsupported javax.xml.parser.transform.Result parameter + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_ENCODING = \ + unsupported encoding: {0} + +ILLEGAL_PARAMETER = \ + Illegal "{0}" parameter: {1} + +# {0} - class name, {2} - method name +UNABLE_TO_FIND_CONVERSION_METHOD = \ + {0} doesn''t have a method {1} {2}(); + +MISSING_ID = \ + Object "{0}" is found in an IDREF property but this object doesn't have an ID. + +NOT_IMPLEMENTED_IN_2_0 = \ + This feature is not available in JAXB RI 2.0 + +UNRECOGNIZED_ELEMENT_NAME = \ + The tag name "{0}" is not known to this JAXBContext. + +TYPE_MISMATCH = \ + "{1}" property of a "{0}" object contains an object of type "{2}" but this is not allowed. \ + See javadoc of this property for what this property can accept. + +MISSING_OBJECT = \ + a required field "{0}" is missing an object + +NOT_IDENTIFIABLE = \ + An object is referenced as IDREF but its ID field is null + +DANGLING_IDREF = \ + A tree contains a reference to ID "{0}" but it's not a part of the object graph + +# Wrapped into a IOException. Not concatenated with any other string. +NULL_OUTPUT_RESOLVER = \ + schema output resolver must not be null + +UNABLE_TO_MARSHAL_NON_ELEMENT = \ + unable to marshal type "{0}" as an element because it is missing an @XmlRootElement annotation + +UNABLE_TO_MARSHAL_UNBOUND_CLASS = \ + unable to marshal type "{0}" as an element because it is not known to this context. + +UNSUPPORTED_PROPERTY = \ + "{0}" is not a supported property + +NULL_PROPERTY_NAME = \ + property name parameter can not be null + +MUST_BE_X = \ + property "{0}" must be an instance of type {1}, not {2} + +# {0}, {1}, {2} - class name. e.g.: Instance of "com.test.implementation.Implementation" is substituting "com.test.abstractbase.AbstractType", but "com.test.implementation.Implementation" is bound to an anonymous type. +SUBSTITUTED_BY_ANONYMOUS_TYPE = \ + Instance of "{1}" is substituting "{0}", but "{2}" is bound to an anonymous type. + +CYCLE_IN_MARSHALLER = \ + A cycle is detected in the object graph. This will cause infinitely deep XML: {0} + +# {0} - class name +UNABLE_TO_DISCOVER_EVENTHANDLER = \ + Unable to list methods of "{0}". If there is any event callback handler on this class, it will be ignored. + +ELEMENT_NEEDED_BUT_FOUND_DOCUMENT = \ + A DOM document "{0}" is found but an element is needed. Use Document.getDocumentElement() and set that object instead. + +UNKNOWN_CLASS = \ + {0} nor any of its super class is known to this context. + +FAILED_TO_GENERATE_SCHEMA = \ + Failed to generate schema. + +ERROR_PROCESSING_SCHEMA = \ + Error during schema processing. + +ILLEGAL_CONTENT = \ + Illegal XML content in <{0}>: "{1}". diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_de.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_de.properties new file mode 100644 index 00000000..75d6d5c2 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_de.properties @@ -0,0 +1,68 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Wrapped into an Exception. Not concatenated with any other string. +NOT_MARSHALLABLE = die Methode marshal() kann nicht mit Objektparameter verwendet werden + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_RESULT = nicht unterst\u00fctzter javax.xml.parser.transform.Result-Parameter + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_ENCODING = nicht unterst\u00fctzte Codierung: {0} + +ILLEGAL_PARAMETER = Ung\u00fcltiger "{0}"-Parameter: {1} + +# {0} - class name, {2} - method name +UNABLE_TO_FIND_CONVERSION_METHOD = {0} enth\u00e4lt keine Methode {1} {2}(); + +MISSING_ID = Objekt "{0}" ist in einer IDREF-Eigenschaft enthalten, dieses Objekt hat jedoch keine ID. + +NOT_IMPLEMENTED_IN_2_0 = Dieses Feature ist in JAXB RI 2.0 nicht verf\u00fcgbar + +UNRECOGNIZED_ELEMENT_NAME = Der Tag-Name "{0}" ist diesem JAXBContext nicht bekannt. + +TYPE_MISMATCH = "{1}"-Eigenschaft eines "{0}"-Objekts enth\u00e4lt ein Objekt vom Typ "{2}", dies ist jedoch nicht zul\u00e4ssig. In javadoc f\u00fcr diese Eigenschaft wird beschrieben, was diese Eigenschaft akzeptieren kann. + +MISSING_OBJECT = bei einem Pflichtfeld "{0}" fehlt ein Objekt + +NOT_IDENTIFIABLE = Ein Objekt wird als IDREF referenziert, das ID-Feld ist jedoch null + +DANGLING_IDREF = Ein Baum enth\u00e4lt eine Referenz auf ID "{0}", ist jedoch nicht Bestandteil des Objektdiagramms + +# Wrapped into a IOException. Not concatenated with any other string. +NULL_OUTPUT_RESOLVER = Schemaausgabe-Resolver darf nicht null sein + +UNABLE_TO_MARSHAL_NON_ELEMENT = Marshalling von Typ "{0}" als Element ist nicht m\u00f6glich, weil eine @XmlRootElement-Annotation fehlt + +UNABLE_TO_MARSHAL_UNBOUND_CLASS = Marshalling von Typ "{0}" als Element ist nicht m\u00f6glich, weil er diesem Kontext nicht bekannt ist + +UNSUPPORTED_PROPERTY = "{0}" ist keine unterst\u00fctzte Eigenschaft + +NULL_PROPERTY_NAME = Parameter f\u00fcr Eigenschaftsname darf nicht null sein + +MUST_BE_X = Eigenschaft "{0}" muss eine Instanz vom Typ {1} sein, und nicht {2} + +# {0}, {1}, {2} - class name. e.g.: Instance of "com.test.implementation.Implementation" is substituting "com.test.abstractbase.AbstractType", but "com.test.implementation.Implementation" is bound to an anonymous type. +SUBSTITUTED_BY_ANONYMOUS_TYPE = Instanz von "{1}" ersetzt "{0}", "{2}" ist jedoch an einen anonymen Typ gebunden. + +CYCLE_IN_MARSHALLER = Ein Zyklus wird in dem Objektdiagramm ermittelt. Dies verursacht ein endlos tiefes XML: {0} + +# {0} - class name +UNABLE_TO_DISCOVER_EVENTHANDLER = Methoden von "{0}" k\u00f6nnen nicht aufgelistet werden. Wenn ein Ereignis-Callback Handler auf dieser Klasse vorhanden ist, wird er ignoriert. + +ELEMENT_NEEDED_BUT_FOUND_DOCUMENT = Ein DOM-Dokument "{0}" wurde gefunden, es ist jedoch ein Element erforderlich. Verwenden Sie Document.getDocumentElement(), und legen Sie dieses Objekt stattdessen fest. + +UNKNOWN_CLASS = Weder {0} noch eine der zugeh\u00f6rigen Superklassen ist diesem Kontext bekannt. + +FAILED_TO_GENERATE_SCHEMA = Generieren von Schema nicht erfolgreich. + +ERROR_PROCESSING_SCHEMA = Fehler bei der Schemaverarbeitung. + +ILLEGAL_CONTENT = Ung\u00fcltiger XML-Content in <{0}>: "{1}". diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_es.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_es.properties new file mode 100644 index 00000000..672bfb8a --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_es.properties @@ -0,0 +1,68 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Wrapped into an Exception. Not concatenated with any other string. +NOT_MARSHALLABLE = No es posible utilizar el m\u00e9todo marshal() con el par\u00e1metro de objeto. + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_RESULT = Par\u00e1metro javax.xml.parser.transform.Result no soportado. + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_ENCODING = Codificaci\u00f3n no soportada: {0}. + +ILLEGAL_PARAMETER = Par\u00e1metro "{0}" no v\u00e1lido: {1} + +# {0} - class name, {2} - method name +UNABLE_TO_FIND_CONVERSION_METHOD = {0} no tiene un m\u00e9todo {1} {2}(); + +MISSING_ID = El objeto "{0}" se encuentra en una propiedad IDREF, pero este objeto no tiene un identificador. + +NOT_IMPLEMENTED_IN_2_0 = Esta funci\u00f3n no est\u00e1 disponible en la implantaci\u00f3n de referencia de JAXB 2.0. + +UNRECOGNIZED_ELEMENT_NAME = El nombre de la etiqueta "{0}" no es conocido en este contexto de JAXB. + +TYPE_MISMATCH = La propiedad "{1}" de un objeto "{0}" contiene un objeto del tipo "{2}", pero esto no est\u00e1 permitido. Consulte la documentaci\u00f3n javadoc de esta propiedad para saber qu\u00e9 permite. + +MISSING_OBJECT = falta un objeto en un campo necesario"{0}" + +NOT_IDENTIFIABLE = Se hace referencia a un objeto como IDREF, pero su campo de identificador es nulo + +DANGLING_IDREF = Un \u00e1rbol contiene una referencia al identificador "{0}", pero no forma parte del gr\u00e1fico del objeto + +# Wrapped into a IOException. Not concatenated with any other string. +NULL_OUTPUT_RESOLVER = La resoluci\u00f3n de salida del esquema no debe ser nula. + +UNABLE_TO_MARSHAL_NON_ELEMENT = no se ha podido canalizar el tipo "{0}" como un elemento, porque le falta una anotaci\u00f3n @XmlRootElement + +UNABLE_TO_MARSHAL_UNBOUND_CLASS = no se ha podido canalizar el tipo "{0}" como un elemento, porque no se conoce en este contexto. + +UNSUPPORTED_PROPERTY = "{0}" no es una propiedad soportada + +NULL_PROPERTY_NAME = el par\u00e1metro del nombre de propiedad no puede ser nulo + +MUST_BE_X = la propiedad "{0}" debe ser una instancia del tipo {1}, no {2} + +# {0}, {1}, {2} - class name. e.g.: Instance of "com.test.implementation.Implementation" is substituting "com.test.abstractbase.AbstractType", but "com.test.implementation.Implementation" is bound to an anonymous type. +SUBSTITUTED_BY_ANONYMOUS_TYPE = La instancia de "{1}" sustituye a "{0}", pero "{2}" est\u00e1 enlazado a un tipo an\u00f3nimo. + +CYCLE_IN_MARSHALLER = Se ha detectado un ciclo en el gr\u00e1fico de objeto. Esto provocar\u00e1 un XML con profundidad infinita: {0} + +# {0} - class name +UNABLE_TO_DISCOVER_EVENTHANDLER = No se han podido mostrar los m\u00e9todos de "{0}". Si hay un elemento CallbackHandler de eventos en esta clase, se ignorar\u00e1. + +ELEMENT_NEEDED_BUT_FOUND_DOCUMENT = Se ha encontrado un documento DOM "{0}", pero se necesita un elemento. Utilice Document.getDocumentElement() y defina ese objeto en su lugar. + +UNKNOWN_CLASS = {0} ni ninguna de sus superclases se conocen en este contexto. + +FAILED_TO_GENERATE_SCHEMA = Fallo al generar el esquema. + +ERROR_PROCESSING_SCHEMA = Error durante el procesamiento del esquema. + +ILLEGAL_CONTENT = Contenido XML no v\u00e1lido en <{0}>: "{1}". diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_fr.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_fr.properties new file mode 100644 index 00000000..e0f1fabf --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_fr.properties @@ -0,0 +1,68 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Wrapped into an Exception. Not concatenated with any other string. +NOT_MARSHALLABLE = Il n'est pas possible d'utiliser la m\u00e9thode marshal() avec le param\u00e8tre d'objet + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_RESULT = param\u00e8tre javax.xml.parser.transform.Result non pris en charge + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_ENCODING = encodage non pris en charge : {0} + +ILLEGAL_PARAMETER = Param\u00e8tre "{0}" interdit : {1} + +# {0} - class name, {2} - method name +UNABLE_TO_FIND_CONVERSION_METHOD = {0} ne comporte aucune m\u00e9thode {1} {2}() ; + +MISSING_ID = L"objet "{0}" a \u00e9t\u00e9 d\u00e9tect\u00e9 dans une propri\u00e9t\u00e9 IDREF, mais cet objet ne comporte aucun ID. + +NOT_IMPLEMENTED_IN_2_0 = Cette fonctionnalit\u00e9 n'est pas disponible dans JAXB RI 2.0 + +UNRECOGNIZED_ELEMENT_NAME = Le nom de balise "{0}" est inconnu pour ce contexte JAXBContext. + +TYPE_MISMATCH = La propri\u00e9t\u00e9 "{1}" d''un objet "{0}" contient un objet de type "{2}" mais cela n''est pas autoris\u00e9. Pour savoir ce que cette propri\u00e9t\u00e9 peut accepter, consultez Javadoc. + +MISSING_OBJECT = un objet est manquant dans un champ obligatoire "{0}" + +NOT_IDENTIFIABLE = Un objet est r\u00e9f\u00e9renc\u00e9 en tant qu'IDREF mais son champ d'ID est NULL + +DANGLING_IDREF = Une arborescence contient une r\u00e9f\u00e9rence \u00e0 l''ID "{0}" mais elle ne fait pas partie du graphique d''objet + +# Wrapped into a IOException. Not concatenated with any other string. +NULL_OUTPUT_RESOLVER = le r\u00e9solveur de sortie de sch\u00e9ma ne doit pas \u00eatre NULL + +UNABLE_TO_MARSHAL_NON_ELEMENT = impossible de s\u00e9rialiser le type "{0}" en tant qu''\u00e9l\u00e9ment car il lui manque une annotation @XmlRootElement + +UNABLE_TO_MARSHAL_UNBOUND_CLASS = impossible de s\u00e9rialiser le type "{0}" en tant qu''\u00e9l\u00e9ment car il est inconnu dans ce contexte. + +UNSUPPORTED_PROPERTY = "{0}" n''est pas une propri\u00e9t\u00e9 prise en charge + +NULL_PROPERTY_NAME = le param\u00e8tre de nom de propri\u00e9t\u00e9 ne peut pas \u00eatre NULL + +MUST_BE_X = la propri\u00e9t\u00e9 "{0}" doit \u00eatre une instance de type {1}, non pas {2} + +# {0}, {1}, {2} - class name. e.g.: Instance of "com.test.implementation.Implementation" is substituting "com.test.abstractbase.AbstractType", but "com.test.implementation.Implementation" is bound to an anonymous type. +SUBSTITUTED_BY_ANONYMOUS_TYPE = L''instance de "{1}" remplace "{0}", mais "{2}" est li\u00e9 \u00e0 un type anonyme. + +CYCLE_IN_MARSHALLER = Un cycle est d\u00e9tect\u00e9 dans le graphique d''objet. Cela g\u00e9n\u00e9rera un fichier XML d''une profondeur infinie : {0} + +# {0} - class name +UNABLE_TO_DISCOVER_EVENTHANDLER = Impossible de lister les m\u00e9thodes de "{0}". S''il existe un gestionnaire de callback d''\u00e9v\u00e9nement sur cette classe, il ne sera pas pris en compte. + +ELEMENT_NEEDED_BUT_FOUND_DOCUMENT = Un document DOM "{0}" a \u00e9t\u00e9 d\u00e9tect\u00e9 mais un \u00e9l\u00e9ment est n\u00e9cessaire. Utilisez Document.getDocumentElement() et d\u00e9finissez cet objet \u00e0 la place. + +UNKNOWN_CLASS = {0} ni aucune de ses superclasses n''est connue dans ce contexte. + +FAILED_TO_GENERATE_SCHEMA = Echec de la g\u00e9n\u00e9ration du sch\u00e9ma. + +ERROR_PROCESSING_SCHEMA = Erreur lors du traitement du sch\u00e9ma. + +ILLEGAL_CONTENT = Contenu XML interdit dans <{0}> : "{1}". diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_it.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_it.properties new file mode 100644 index 00000000..e4f4b448 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_it.properties @@ -0,0 +1,68 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Wrapped into an Exception. Not concatenated with any other string. +NOT_MARSHALLABLE = impossibile eseguire il marshalling del parametro dell'oggetto di cui eseguire il marshalling () + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_RESULT = parametro javax.xml.parser.transform.Result non supportato + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_ENCODING = codifica non supportata: {0} + +ILLEGAL_PARAMETER = Parametro "{0}" non valido: {1} + +# {0} - class name, {2} - method name +UNABLE_TO_FIND_CONVERSION_METHOD = {0} non ha un metodo {1} {2}(); + +MISSING_ID = Oggetto "{0}" trovato in una propriet\u00e0 IDREF ma questo oggetto non ha un ID. + +NOT_IMPLEMENTED_IN_2_0 = Questa funzione non \u00e8 disponibile in JAXB RI 2.0 + +UNRECOGNIZED_ELEMENT_NAME = Nome della tag "{0}" sconosciuto a questo JAXBContext. + +TYPE_MISMATCH = La propriet\u00e0 "{1}" di un oggetto "{0}" contiene un oggetto di tipo "{2}" non consentito. Vedere il javadoc di questa propriet\u00e0 per quello che pu\u00f2 essere accettato dalla propriet\u00e0. + +MISSING_OBJECT = oggetto mancante in un campo obbligatorio ''{0}'' + +NOT_IDENTIFIABLE = Viene fatto riferimento a un oggetto come IDREF ma il relativo campo ID \u00e8 nullo + +DANGLING_IDREF = Una struttura contiene un riferimento all''ID "{0}" ma non fa parte del grafico dell''oggetto + +# Wrapped into a IOException. Not concatenated with any other string. +NULL_OUTPUT_RESOLVER = il resolver di output dello schema non deve essere nullo + +UNABLE_TO_MARSHAL_NON_ELEMENT = impossibile eseguire il marshalling del tipo "{0}" come elemento poich\u00e9 manca un''annotazione @XmlRootElement + +UNABLE_TO_MARSHAL_UNBOUND_CLASS = impossibile eseguire il marshalling del tipo "{0}" come elemento poich\u00e9 \u00e8 sconosciuto a questo contesto. + +UNSUPPORTED_PROPERTY = "{0}" non \u00e8 una propriet\u00e0 supportata + +NULL_PROPERTY_NAME = il parametro del nome della propriet\u00e0 non pu\u00f2 essere nullo + +MUST_BE_X = la propriet\u00e0 "{0}" deve essere un''istanza di tipo {1}, non {2} + +# {0}, {1}, {2} - class name. e.g.: Instance of "com.test.implementation.Implementation" is substituting "com.test.abstractbase.AbstractType", but "com.test.implementation.Implementation" is bound to an anonymous type. +SUBSTITUTED_BY_ANONYMOUS_TYPE = L''istanza di "{1}" sta sostituendo "{0}" ma "{2}" \u00e8 associato a un tipo anonimo. + +CYCLE_IN_MARSHALLER = \u00c8 stato rilevato un ciclo nel grafico dell''oggetto. Questo provocher\u00e0 un XML con profondit\u00e0 infinita: {0} + +# {0} - class name +UNABLE_TO_DISCOVER_EVENTHANDLER = Impossibile elencare i metodi di "{0}". Gli handler di callback degli eventi presenti su questa classe verranno ignorati. + +ELEMENT_NEEDED_BUT_FOUND_DOCUMENT = \u00c8 stato trovato un documento DOM "{0}" ma \u00e8 richiesto un elemento. Usare Document.getDocumentElement() e impostare invece tale oggetto. + +UNKNOWN_CLASS = {0} e le relative classi superiori sono sconosciute a questo contesto. + +FAILED_TO_GENERATE_SCHEMA = Generazione dello schema non riuscita. + +ERROR_PROCESSING_SCHEMA = Errore durante l'elaborazione dello schema. + +ILLEGAL_CONTENT = Contenuto XML non valido in <{0}>: "{1}". diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_ja.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_ja.properties new file mode 100644 index 00000000..45346426 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_ja.properties @@ -0,0 +1,68 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Wrapped into an Exception. Not concatenated with any other string. +NOT_MARSHALLABLE = marshal()\u306eobject\u30d1\u30e9\u30e1\u30fc\u30bf\u304c\u30de\u30fc\u30b7\u30e3\u30ea\u30f3\u30b0\u53ef\u80fd\u3067\u306f\u3042\u308a\u307e\u305b\u3093 + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_RESULT = \u30b5\u30dd\u30fc\u30c8\u3055\u308c\u3066\u3044\u306a\u3044javax.xml.parser.transform.Result\u30d1\u30e9\u30e1\u30fc\u30bf\u3067\u3059 + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_ENCODING = \u30b5\u30dd\u30fc\u30c8\u3055\u308c\u3066\u3044\u306a\u3044\u30a8\u30f3\u30b3\u30fc\u30c7\u30a3\u30f3\u30b0: {0} + +ILLEGAL_PARAMETER = "{0}"\u30d1\u30e9\u30e1\u30fc\u30bf\u304c\u4e0d\u6b63\u3067\u3059: {1} + +# {0} - class name, {2} - method name +UNABLE_TO_FIND_CONVERSION_METHOD = {0}\u306b\u30e1\u30bd\u30c3\u30c9{1} {2}()\u304c\u3042\u308a\u307e\u305b\u3093; + +MISSING_ID = \u30aa\u30d6\u30b8\u30a7\u30af\u30c8"{0}"\u304cIDREF\u30d7\u30ed\u30d1\u30c6\u30a3\u306b\u898b\u3064\u304b\u308a\u307e\u3057\u305f\u304c\u3001\u3053\u306e\u30d7\u30ed\u30d1\u30c6\u30a3\u306b\u306fID\u304c\u3042\u308a\u307e\u305b\u3093\u3002 + +NOT_IMPLEMENTED_IN_2_0 = \u3053\u306e\u6a5f\u80fd\u306fJAXB RI 2.0\u3067\u306f\u4f7f\u7528\u4e0d\u53ef\u3067\u3059 + +UNRECOGNIZED_ELEMENT_NAME = \u30bf\u30b0\u540d"{0}"\u306f\u3053\u306eJAXBContext\u3067\u306f\u8a8d\u8b58\u3055\u308c\u307e\u305b\u3093\u3002 + +TYPE_MISMATCH = "{0}"\u30aa\u30d6\u30b8\u30a7\u30af\u30c8\u306e"{1}"\u30d7\u30ed\u30d1\u30c6\u30a3\u306b\u306f"{2}"\u30bf\u30a4\u30d7\u306e\u30aa\u30d6\u30b8\u30a7\u30af\u30c8\u304c\u542b\u307e\u308c\u3066\u3044\u307e\u3059\u304c\u3001\u3053\u308c\u306f\u8a31\u53ef\u3055\u308c\u307e\u305b\u3093\u3002\u3053\u306e\u30d7\u30ed\u30d1\u30c6\u30a3\u304c\u53d7\u5165\u53ef\u80fd\u306a\u30bf\u30a4\u30d7\u306b\u3064\u3044\u3066\u306f\u3001\u3053\u306e\u30d7\u30ed\u30d1\u30c6\u30a3\u306ejavadoc\u3092\u53c2\u7167\u3057\u3066\u304f\u3060\u3055\u3044\u3002 + +MISSING_OBJECT = \u5fc5\u9808\u30d5\u30a3\u30fc\u30eb\u30c9"{0}"\u306b\u30aa\u30d6\u30b8\u30a7\u30af\u30c8\u304c\u3042\u308a\u307e\u305b\u3093 + +NOT_IDENTIFIABLE = \u30aa\u30d6\u30b8\u30a7\u30af\u30c8\u306fIDREF\u3068\u3057\u3066\u53c2\u7167\u3055\u308c\u3066\u3044\u307e\u3059\u304c\u3001ID\u30d5\u30a3\u30fc\u30eb\u30c9\u304cnull\u3067\u3059 + +DANGLING_IDREF = \u30c4\u30ea\u30fc\u306bID "{0}"\u3078\u306e\u53c2\u7167\u304c\u542b\u307e\u308c\u3066\u3044\u307e\u3059\u304c\u3001\u30aa\u30d6\u30b8\u30a7\u30af\u30c8\u30fb\u30b0\u30e9\u30d5\u306e\u4e00\u90e8\u3067\u306f\u3042\u308a\u307e\u305b\u3093 + +# Wrapped into a IOException. Not concatenated with any other string. +NULL_OUTPUT_RESOLVER = \u30b9\u30ad\u30fc\u30de\u51fa\u529b\u30ea\u30be\u30eb\u30d0\u306fnull\u306b\u3067\u304d\u307e\u305b\u3093 + +UNABLE_TO_MARSHAL_NON_ELEMENT = @XmlRootElement\u6ce8\u91c8\u304c\u306a\u3044\u305f\u3081\u3001\u30bf\u30a4\u30d7"{0}"\u3092\u8981\u7d20\u3068\u3057\u3066\u30de\u30fc\u30b7\u30e3\u30ea\u30f3\u30b0\u3067\u304d\u307e\u305b\u3093 + +UNABLE_TO_MARSHAL_UNBOUND_CLASS = \u3053\u306e\u30b3\u30f3\u30c6\u30ad\u30b9\u30c8\u3067\u8a8d\u8b58\u3055\u308c\u306a\u3044\u305f\u3081\u3001\u30bf\u30a4\u30d7"{0}"\u3092\u8981\u7d20\u3068\u3057\u3066\u30de\u30fc\u30b7\u30e3\u30ea\u30f3\u30b0\u3067\u304d\u307e\u305b\u3093\u3002 + +UNSUPPORTED_PROPERTY = "{0}"\u306f\u30b5\u30dd\u30fc\u30c8\u3055\u308c\u3066\u3044\u308b\u30d7\u30ed\u30d1\u30c6\u30a3\u3067\u306f\u3042\u308a\u307e\u305b\u3093 + +NULL_PROPERTY_NAME = \u30d7\u30ed\u30d1\u30c6\u30a3\u306ename\u30d1\u30e9\u30e1\u30fc\u30bf\u306fnull\u306b\u3067\u304d\u307e\u305b\u3093 + +MUST_BE_X = \u30d7\u30ed\u30d1\u30c6\u30a3"{0}"\u306f\u3001{2}\u3067\u306f\u306a\u304f\u30bf\u30a4\u30d7{1}\u306e\u30a4\u30f3\u30b9\u30bf\u30f3\u30b9\u3067\u3042\u308b\u5fc5\u8981\u304c\u3042\u308a\u307e\u3059 + +# {0}, {1}, {2} - class name. e.g.: Instance of "com.test.implementation.Implementation" is substituting "com.test.abstractbase.AbstractType", but "com.test.implementation.Implementation" is bound to an anonymous type. +SUBSTITUTED_BY_ANONYMOUS_TYPE = "{1}"\u306e\u30a4\u30f3\u30b9\u30bf\u30f3\u30b9\u306f"{0}"\u3092\u4ee3\u7528\u3057\u3066\u3044\u307e\u3059\u304c\u3001"{2}"\u306f\u533f\u540d\u30bf\u30a4\u30d7\u306b\u30d0\u30a4\u30f3\u30c9\u3055\u308c\u3066\u3044\u307e\u3059\u3002 + +CYCLE_IN_MARSHALLER = \u30aa\u30d6\u30b8\u30a7\u30af\u30c8\u30fb\u30b0\u30e9\u30d5\u3067\u5faa\u74b0\u304c\u691c\u51fa\u3055\u308c\u307e\u3057\u305f\u3002\u3053\u308c\u306b\u3088\u308aXML\u304c\u7121\u9650\u306b\u6df1\u304f\u306a\u308a\u307e\u3059: {0} + +# {0} - class name +UNABLE_TO_DISCOVER_EVENTHANDLER = "{0}"\u306e\u30e1\u30bd\u30c3\u30c9\u3092\u30ea\u30b9\u30c8\u3067\u304d\u307e\u305b\u3093\u3002\u3053\u306e\u30af\u30e9\u30b9\u306b\u30a4\u30d9\u30f3\u30c8\u30fb\u30b3\u30fc\u30eb\u30d0\u30c3\u30af\u30fb\u30cf\u30f3\u30c9\u30e9\u304c\u3042\u308b\u5834\u5408\u306f\u7121\u8996\u3055\u308c\u307e\u3059\u3002 + +ELEMENT_NEEDED_BUT_FOUND_DOCUMENT = DOM\u30c9\u30ad\u30e5\u30e1\u30f3\u30c8"{0}"\u304c\u898b\u3064\u304b\u308a\u307e\u3057\u305f\u304c\u3001\u8981\u7d20\u304c\u5fc5\u8981\u3067\u3059\u3002Document.getDocumentElement()\u3092\u4f7f\u7528\u3057\u3066\u3001\u304b\u308f\u308a\u306b\u305d\u306e\u30aa\u30d6\u30b8\u30a7\u30af\u30c8\u3092\u8a2d\u5b9a\u3057\u3066\u304f\u3060\u3055\u3044\u3002 + +UNKNOWN_CLASS = {0}\u304a\u3088\u3073\u305d\u306e\u30b9\u30fc\u30d1\u30fc\u30fb\u30af\u30e9\u30b9\u306f\u3053\u306e\u30b3\u30f3\u30c6\u30ad\u30b9\u30c8\u3067\u306f\u8a8d\u8b58\u3055\u308c\u307e\u305b\u3093\u3002 + +FAILED_TO_GENERATE_SCHEMA = \u30b9\u30ad\u30fc\u30de\u306e\u751f\u6210\u306b\u5931\u6557\u3057\u307e\u3057\u305f\u3002 + +ERROR_PROCESSING_SCHEMA = \u30b9\u30ad\u30fc\u30de\u306e\u51e6\u7406\u4e2d\u306b\u30a8\u30e9\u30fc\u304c\u767a\u751f\u3057\u307e\u3057\u305f\u3002 + +ILLEGAL_CONTENT = <{0}>\u306eXML\u30b3\u30f3\u30c6\u30f3\u30c4\u304c\u4e0d\u6b63\u3067\u3059: "{1}"\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_ko.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_ko.properties new file mode 100644 index 00000000..a178cfe2 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_ko.properties @@ -0,0 +1,68 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Wrapped into an Exception. Not concatenated with any other string. +NOT_MARSHALLABLE = \uac1d\uccb4 \ub9e4\uac1c\ubcc0\uc218\uc5d0 \ub300\ud574\uc11c\ub294 marshal() \uba54\uc18c\ub4dc\ub97c \uc0ac\uc6a9\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_RESULT = \uc9c0\uc6d0\ub418\uc9c0 \uc54a\ub294 javax.xml.parser.transform.Result \ub9e4\uac1c\ubcc0\uc218 + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_ENCODING = \uc9c0\uc6d0\ub418\uc9c0 \uc54a\ub294 \uc778\ucf54\ub529: {0} + +ILLEGAL_PARAMETER = \uc798\ubabb\ub41c "{0}" \ub9e4\uac1c\ubcc0\uc218: {1} + +# {0} - class name, {2} - method name +UNABLE_TO_FIND_CONVERSION_METHOD = {0}\uc5d0 {1} {2}(); \uba54\uc18c\ub4dc\uac00 \uc5c6\uc2b5\ub2c8\ub2e4. + +MISSING_ID = "{0}" \uac1d\uccb4\uac00 IDREF \uc18d\uc131\uc5d0\uc11c \ubc1c\uacac\ub418\uc5c8\uc9c0\ub9cc \uc774 \uac1d\uccb4\uc5d0 ID\uac00 \uc5c6\uc2b5\ub2c8\ub2e4. + +NOT_IMPLEMENTED_IN_2_0 = \uc774 \uae30\ub2a5\uc740 JAXB RI 2.0\uc5d0\uc11c \uc0ac\uc6a9\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +UNRECOGNIZED_ELEMENT_NAME = \uc774 JAXBContext\uc5d0\uc11c \ud0dc\uadf8 \uc774\ub984 "{0}"\uc744(\ub97c) \uc778\uc2dd\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +TYPE_MISMATCH = "{0}" \uac1d\uccb4\uc758 "{1}" \uc18d\uc131\uc5d0 "{2}" \uc720\ud615\uc758 \uac1d\uccb4\uac00 \ud3ec\ud568\ub418\uc5b4 \uc788\uc9c0\ub9cc \uc774 \uc720\ud615\uc740 \ud5c8\uc6a9\ub418\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. \uc774 \uc18d\uc131\uc5d0 \uc0ac\uc6a9\ud560 \uc218 \uc788\ub294 \uc720\ud615\uc740 \uc774 \uc18d\uc131\uc758 javadoc\ub97c \ucc38\uc870\ud558\uc2ed\uc2dc\uc624. + +MISSING_OBJECT = \ud544\uc218 \ud544\ub4dc "{0}"\uc5d0 \uac1d\uccb4\uac00 \ub204\ub77d\ub418\uc5c8\uc2b5\ub2c8\ub2e4. + +NOT_IDENTIFIABLE = \uac1d\uccb4\uac00 IDREF\ub85c \ucc38\uc870\ub418\uc5c8\uc9c0\ub9cc \ud574\ub2f9 ID \ud544\ub4dc\uac00 \ub110\uc785\ub2c8\ub2e4. + +DANGLING_IDREF = \ud2b8\ub9ac\uac00 ID "{0}"\uc5d0 \ub300\ud55c \ucc38\uc870\ub97c \ud3ec\ud568\ud558\uace0 \uc788\uc9c0\ub9cc \uac1d\uccb4 \uadf8\ub798\ud504\uc5d0 \uc18d\ud558\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. + +# Wrapped into a IOException. Not concatenated with any other string. +NULL_OUTPUT_RESOLVER = \uc2a4\ud0a4\ub9c8 \ucd9c\ub825 \ubd84\uc11d\uae30\ub294 \ub110\uc774 \uc544\ub2c8\uc5b4\uc57c \ud569\ub2c8\ub2e4. + +UNABLE_TO_MARSHAL_NON_ELEMENT = @XmlRootElement \uc8fc\uc11d\uc774 \ub204\ub77d\ub418\uc5b4 "{0}" \uc720\ud615\uc744 \uc694\uc18c\ub85c \ub9c8\uc15c\ub9c1\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +UNABLE_TO_MARSHAL_UNBOUND_CLASS = "{0}" \uc720\ud615\uc740 \uc774 \ucee8\ud14d\uc2a4\ud2b8\uc5d0\uc11c \uc778\uc2dd\ud560 \uc218 \uc5c6\uc73c\ubbc0\ub85c \uc694\uc18c\ub85c \ub9c8\uc15c\ub9c1\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +UNSUPPORTED_PROPERTY = "{0}"\uc740(\ub294) \uc9c0\uc6d0\ub418\ub294 \uc18d\uc131\uc774 \uc544\ub2d9\ub2c8\ub2e4. + +NULL_PROPERTY_NAME = \uc18d\uc131 \uc774\ub984 \ub9e4\uac1c\ubcc0\uc218\ub294 \ub110\uc77c \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +MUST_BE_X = "{0}" \uc18d\uc131\uc740 {2}\uc774(\uac00) \uc544\ub2cc {1} \uc720\ud615\uc758 \uc778\uc2a4\ud134\uc2a4\uc5ec\uc57c \ud569\ub2c8\ub2e4. + +# {0}, {1}, {2} - class name. e.g.: Instance of "com.test.implementation.Implementation" is substituting "com.test.abstractbase.AbstractType", but "com.test.implementation.Implementation" is bound to an anonymous type. +SUBSTITUTED_BY_ANONYMOUS_TYPE = "{1}"\uc758 \uc778\uc2a4\ud134\uc2a4\uac00 "{0}"\uc744(\ub97c) \ub300\uccb4\ud558\uace0 \uc788\uc9c0\ub9cc "{2}"\uc774(\uac00) \uc775\uba85 \uc720\ud615\uc5d0 \ubc14\uc778\ub4dc\ub418\uc5b4 \uc788\uc2b5\ub2c8\ub2e4. + +CYCLE_IN_MARSHALLER = \uac1d\uccb4 \uadf8\ub798\ud504\uc5d0\uc11c \uc21c\ud658\uc774 \uac10\uc9c0\ub418\uc5c8\uc2b5\ub2c8\ub2e4. \uc774\ub85c \uc778\ud574 XML\uc774 \ubb34\ud55c\ub300\ub85c \uae4a\uc5b4\uc9d0: {0} + +# {0} - class name +UNABLE_TO_DISCOVER_EVENTHANDLER = "{0}"\uc758 \uba54\uc18c\ub4dc\ub97c \ub098\uc5f4\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. \uc774 \ud074\ub798\uc2a4\uc5d0 \uc774\ubca4\ud2b8 \ucf5c\ubc31 \ucc98\ub9ac\uae30\uac00 \uc788\uc744 \uacbd\uc6b0 \ubb34\uc2dc\ub429\ub2c8\ub2e4. + +ELEMENT_NEEDED_BUT_FOUND_DOCUMENT = DOM \ubb38\uc11c "{0}"\uc774(\uac00) \ubc1c\uacac\ub418\uc5c8\uc9c0\ub9cc \uc694\uc18c\uac00 \ud544\uc694\ud569\ub2c8\ub2e4. Document.getDocumentElement()\ub97c \uc0ac\uc6a9\ud558\uace0 \ud574\ub2f9 \uac1d\uccb4\ub97c \uc124\uc815\ud558\uc2ed\uc2dc\uc624. + +UNKNOWN_CLASS = \uc774 \ucee8\ud14d\uc2a4\ud2b8\uc5d0\uc11c {0}\uacfc(\uc640) \ud574\ub2f9 \uc218\ud37c \ud074\ub798\uc2a4\ub97c \uc778\uc2dd\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +FAILED_TO_GENERATE_SCHEMA = \uc2a4\ud0a4\ub9c8 \uc0dd\uc131\uc744 \uc2e4\ud328\ud588\uc2b5\ub2c8\ub2e4. + +ERROR_PROCESSING_SCHEMA = \uc2a4\ud0a4\ub9c8 \ucc98\ub9ac \uc911 \uc624\ub958\uac00 \ubc1c\uc0dd\ud588\uc2b5\ub2c8\ub2e4. + +ILLEGAL_CONTENT = <{0}>\uc5d0 \uc798\ubabb\ub41c XML \ucf58\ud150\uce20\uac00 \uc788\uc74c: "{1}". diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_pt_BR.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_pt_BR.properties new file mode 100644 index 00000000..fabed148 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_pt_BR.properties @@ -0,0 +1,68 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Wrapped into an Exception. Not concatenated with any other string. +NOT_MARSHALLABLE = o par\u00e2metro do objeto para fazer marshal() n\u00e3o pode ser submetido a marshal + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_RESULT = par\u00e2metro javax.xml.parser.transform.Result n\u00e3o suportado + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_ENCODING = codifica\u00e7\u00e3o n\u00e3o suportada: {0} + +ILLEGAL_PARAMETER = par\u00e2metro "{0}" inv\u00e1lido: {1} + +# {0} - class name, {2} - method name +UNABLE_TO_FIND_CONVERSION_METHOD = {0} n\u00e3o tem um m\u00e9todo {1} {2}(); + +MISSING_ID = O objeto "{0}" foi encontrado em uma propriedade IDREF, mas este objeto n\u00e3o tem um ID. + +NOT_IMPLEMENTED_IN_2_0 = Este recurso n\u00e3o est\u00e1 dispon\u00edvel no JAXB RI 2.0 + +UNRECOGNIZED_ELEMENT_NAME = O nome da tag "{0}" n\u00e3o \u00e9 conhecido para este JAXBContext. + +TYPE_MISMATCH = a propriedade "{1}" de um objeto "{0}" cont\u00e9m um objeto do tipo "{2}", mas esse tipo n\u00e3o \u00e9 permitido. Consulte javadoc desta propriedade para saber o que essa propriedade pode aceitar. + +MISSING_OBJECT = n\u00e3o foi encontrado um campo "{0}" obrigat\u00f3rio em um objeto + +NOT_IDENTIFIABLE = Um objeto \u00e9 mencionado como IDREF, mas seu campo ID \u00e9 nulo + +DANGLING_IDREF = Uma \u00e1rvore cont\u00e9m uma refer\u00eancia ao ID "{0}", mas n\u00e3o faz parte do gr\u00e1fico do objeto + +# Wrapped into a IOException. Not concatenated with any other string. +NULL_OUTPUT_RESOLVER = o resolvedor de sa\u00edda do esquema n\u00e3o deve ser nulo + +UNABLE_TO_MARSHAL_NON_ELEMENT = n\u00e3o \u00e9 poss\u00edvel fazer marshalling do tipo "{0}" como um elemento porque ele n\u00e3o foi encontrado em uma anota\u00e7\u00e3o @XmlRootElement + +UNABLE_TO_MARSHAL_UNBOUND_CLASS = n\u00e3o \u00e9 poss\u00edvel fazer marshalling do tipo "{0}" como um elemento porque ele n\u00e3o foi encontrado para este contexto. + +UNSUPPORTED_PROPERTY = "{0}" n\u00e3o \u00e9 uma propriedade suportada + +NULL_PROPERTY_NAME = o par\u00e2metro de nome da propriedade n\u00e3o pode ser nulo + +MUST_BE_X = a propriedade "{0}" deve ser uma inst\u00e2ncia do tipo {1}, n\u00e3o {2} + +# {0}, {1}, {2} - class name. e.g.: Instance of "com.test.implementation.Implementation" is substituting "com.test.abstractbase.AbstractType", but "com.test.implementation.Implementation" is bound to an anonymous type. +SUBSTITUTED_BY_ANONYMOUS_TYPE = A inst\u00e2ncia de "{1}" est\u00e1 substituindo "{0}", mas "{2}" est\u00e1 vinculado a um tipo an\u00f4nimo. + +CYCLE_IN_MARSHALLER = Foi detectado um ciclo no gr\u00e1fico do objeto. Isso causar\u00e1 XML profundo infinitamente: {0} + +# {0} - class name +UNABLE_TO_DISCOVER_EVENTHANDLER = N\u00e3o \u00e9 poss\u00edvel listar os m\u00e9todos de "{0}". Se houver qualquer handler de callback do evento nesta classe, ele ser\u00e1 ignorado. + +ELEMENT_NEEDED_BUT_FOUND_DOCUMENT = Um documento DOM "{0}" foi encontrado, mas \u00e9 necess\u00e1rio um elemento. Use Document.getDocumentElement() e defina esse objeto. + +UNKNOWN_CLASS = {0} e nenhuma de sua superclasse \u00e9 conhecida para este contexto. + +FAILED_TO_GENERATE_SCHEMA = Falha ao gerar o esquema. + +ERROR_PROCESSING_SCHEMA = Erro durante o processamento do esquema. + +ILLEGAL_CONTENT = Conte\u00fado XML inv\u00e1lido em <{0}>: "{1}". diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_zh_CN.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_zh_CN.properties new file mode 100644 index 00000000..e737a57c --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_zh_CN.properties @@ -0,0 +1,68 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Wrapped into an Exception. Not concatenated with any other string. +NOT_MARSHALLABLE = \u65e0\u6cd5\u4f7f\u7528\u5e26\u6709\u5bf9\u8c61\u53c2\u6570\u7684 marshal() + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_RESULT = \u4e0d\u652f\u6301 javax.xml.parser.transform.Result \u53c2\u6570 + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_ENCODING = \u4e0d\u652f\u6301\u7684\u7f16\u7801: {0} + +ILLEGAL_PARAMETER = \u975e\u6cd5 "{0}" \u53c2\u6570: {1} + +# {0} - class name, {2} - method name +UNABLE_TO_FIND_CONVERSION_METHOD = {0}\u6ca1\u6709\u65b9\u6cd5{1} {2}(); + +MISSING_ID = \u53d1\u73b0\u5bf9\u8c61 "{0}" \u4f4d\u4e8e IDREF \u5c5e\u6027\u4e2d, \u4f46\u6b64\u5bf9\u8c61\u6ca1\u6709 ID\u3002 + +NOT_IMPLEMENTED_IN_2_0 = \u6b64\u529f\u80fd\u5728 JAXB RI 2.0 \u4e2d\u4e0d\u53ef\u7528 + +UNRECOGNIZED_ELEMENT_NAME = \u6807\u8bb0\u540d\u79f0 "{0}" \u5bf9\u6b64 JAXBContext \u662f\u672a\u77e5\u7684\u3002 + +TYPE_MISMATCH = "{0}" \u5bf9\u8c61\u7684 "{1}" \u5c5e\u6027\u5305\u542b "{2}" \u7c7b\u578b\u7684\u5bf9\u8c61, \u4f46\u8fd9\u662f\u4e0d\u5141\u8bb8\u7684\u3002\u6709\u5173\u6b64\u5c5e\u6027\u53ef\u63a5\u53d7\u7684\u7c7b\u578b, \u8bf7\u53c2\u9605\u6b64\u5c5e\u6027\u7684 javadoc\u3002 + +MISSING_OBJECT = \u5fc5\u586b\u5b57\u6bb5 "{0}" \u7f3a\u5c11\u5bf9\u8c61 + +NOT_IDENTIFIABLE = \u5bf9\u8c61\u5c06\u4f5c\u4e3a IDREF \u5f15\u7528, \u4f46\u5176 ID \u5b57\u6bb5\u4e3a\u7a7a\u503c + +DANGLING_IDREF = \u6811\u5305\u542b\u5bf9 ID "{0}" \u7684\u5f15\u7528, \u4f46\u4e0d\u662f\u5bf9\u8c61\u56fe\u7684\u4e00\u90e8\u5206 + +# Wrapped into a IOException. Not concatenated with any other string. +NULL_OUTPUT_RESOLVER = \u6a21\u5f0f\u8f93\u51fa\u89e3\u6790\u5668\u4e0d\u80fd\u4e3a\u7a7a\u503c + +UNABLE_TO_MARSHAL_NON_ELEMENT = \u7531\u4e8e\u7c7b\u578b "{0}" \u7f3a\u5c11 @XmlRootElement \u6ce8\u91ca, \u65e0\u6cd5\u5c06\u8be5\u7c7b\u578b\u7f16\u96c6\u4e3a\u5143\u7d20 + +UNABLE_TO_MARSHAL_UNBOUND_CLASS = \u7531\u4e8e\u7c7b\u578b "{0}" \u5bf9\u6b64\u4e0a\u4e0b\u6587\u662f\u672a\u77e5\u7684, \u65e0\u6cd5\u5c06\u8be5\u7c7b\u578b\u7f16\u96c6\u4e3a\u5143\u7d20\u3002 + +UNSUPPORTED_PROPERTY = "{0}" \u4e0d\u662f\u652f\u6301\u7684\u5c5e\u6027 + +NULL_PROPERTY_NAME = \u5c5e\u6027\u540d\u53c2\u6570\u4e0d\u80fd\u4e3a\u7a7a\u503c + +MUST_BE_X = \u5c5e\u6027 "{0}" \u5fc5\u987b\u4e3a{1}\u7c7b\u578b\u7684\u5b9e\u4f8b, \u800c\u4e0d\u662f{2}\u7c7b\u578b\u7684\u5b9e\u4f8b + +# {0}, {1}, {2} - class name. e.g.: Instance of "com.test.implementation.Implementation" is substituting "com.test.abstractbase.AbstractType", but "com.test.implementation.Implementation" is bound to an anonymous type. +SUBSTITUTED_BY_ANONYMOUS_TYPE = "{1}" \u7684\u5b9e\u4f8b\u66ff\u4ee3\u4e86 "{0}", \u4f46 "{2}" \u7ed1\u5b9a\u5230\u533f\u540d\u7c7b\u578b\u3002 + +CYCLE_IN_MARSHALLER = \u5728\u5bf9\u8c61\u56fe\u4e2d\u68c0\u6d4b\u5230\u5faa\u73af\u3002\u8fd9\u5c06\u4ea7\u751f\u65e0\u9650\u6df1\u7684 XML: {0} + +# {0} - class name +UNABLE_TO_DISCOVER_EVENTHANDLER = \u65e0\u6cd5\u5217\u51fa "{0}" \u7684\u65b9\u6cd5\u3002\u5982\u679c\u6b64\u7c7b\u4e0a\u5b58\u5728\u4efb\u610f\u4e8b\u4ef6\u56de\u8c03\u5904\u7406\u7a0b\u5e8f, \u5219\u5c06\u5ffd\u7565\u8be5\u5904\u7406\u7a0b\u5e8f\u3002 + +ELEMENT_NEEDED_BUT_FOUND_DOCUMENT = \u627e\u5230 DOM \u6587\u6863 "{0}", \u4f46\u9700\u8981\u4e00\u4e2a\u5143\u7d20\u3002\u8bf7\u6539\u7528 Document.getDocumentElement() \u5e76\u8bbe\u7f6e\u8be5\u5bf9\u8c61\u3002 + +UNKNOWN_CLASS = {0}\u4ee5\u53ca\u5176\u4efb\u4f55\u8d85\u7c7b\u5bf9\u6b64\u4e0a\u4e0b\u6587\u90fd\u662f\u672a\u77e5\u7684\u3002 + +FAILED_TO_GENERATE_SCHEMA = \u65e0\u6cd5\u751f\u6210\u6a21\u5f0f\u3002 + +ERROR_PROCESSING_SCHEMA = \u6a21\u5f0f\u5904\u7406\u671f\u95f4\u51fa\u9519\u3002 + +ILLEGAL_CONTENT = <{0}> \u4e2d\u7684\u975e\u6cd5 XML \u5185\u5bb9: "{1}"\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_zh_TW.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_zh_TW.properties new file mode 100644 index 00000000..a8251727 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Messages_zh_TW.properties @@ -0,0 +1,68 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Wrapped into an Exception. Not concatenated with any other string. +NOT_MARSHALLABLE = marshal() \u7684\u7269\u4ef6\u53c3\u6578\u7121\u6cd5\u5c01\u9001\u8655\u7406 + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_RESULT = \u4e0d\u652f\u63f4\u7684 javax.xml.parser.transform.Result \u53c3\u6578 + +# Not concatenated with any other string (written on a separate line). +UNSUPPORTED_ENCODING = \u4e0d\u652f\u63f4\u7684\u7de8\u78bc: {0} + +ILLEGAL_PARAMETER = \u7121\u6548\u7684 "{0}" \u53c3\u6578: {1} + +# {0} - class name, {2} - method name +UNABLE_TO_FIND_CONVERSION_METHOD = {0} \u672a\u5305\u542b\u65b9\u6cd5 {1} {2}(); + +MISSING_ID = \u5728 IDREF \u7279\u6027\u4e2d\u627e\u5230\u7269\u4ef6 "{0}", \u4f46\u6b64\u7269\u4ef6\u6c92\u6709 ID. + +NOT_IMPLEMENTED_IN_2_0 = JAXB RI 2.0 \u4e2d\u672a\u63d0\u4f9b\u6b64\u529f\u80fd + +UNRECOGNIZED_ELEMENT_NAME = JAXBContext \u4e0d\u8a8d\u5f97\u6a19\u8a18\u540d\u7a31 "{0}". + +TYPE_MISMATCH = \u7269\u4ef6 "{0}" \u7684\u7279\u6027 "{1}" \u5305\u542b\u985e\u578b "{2}" \u7684\u7269\u4ef6, \u4f46\u9019\u662f\u4e0d\u5141\u8a31\u7684. \u8acb\u53c3\u95b1\u6b64\u7279\u6027\u7684 javadoc, \u77ad\u89e3\u6b64\u7279\u6027\u53ef\u63a5\u53d7\u7684\u7269\u4ef6\u985e\u578b. + +MISSING_OBJECT = \u5fc5\u8981\u7684\u6b04\u4f4d "{0}" \u7f3a\u5c11\u7269\u4ef6 + +NOT_IDENTIFIABLE = \u7269\u4ef6\u88ab\u53c3\u7167\u70ba IDREF, \u4f46\u5176 ID \u6b04\u4f4d\u70ba\u7a7a\u503c + +DANGLING_IDREF = \u6a39\u72c0\u7d50\u69cb\u5305\u542b ID "{0}" \u7684\u53c3\u7167, \u4f46\u5b83\u4e0d\u662f\u7269\u4ef6\u5716\u8868\u7684\u4e00\u90e8\u5206 + +# Wrapped into a IOException. Not concatenated with any other string. +NULL_OUTPUT_RESOLVER = \u7db1\u8981\u8f38\u51fa\u89e3\u6790\u5668\u4e0d\u5f97\u70ba\u7a7a\u503c + +UNABLE_TO_MARSHAL_NON_ELEMENT = \u7121\u6cd5\u5c07\u985e\u578b "{0}" \u5c01\u9001\u8655\u7406\u70ba\u5143\u7d20, \u56e0\u5176\u907a\u6f0f @XmlRootElement \u8a3b\u89e3 + +UNABLE_TO_MARSHAL_UNBOUND_CLASS = \u7121\u6cd5\u5c07\u985e\u578b "{0}" \u5c01\u9001\u8655\u7406\u70ba\u5143\u7d20, \u6b64\u76f8\u95dc\u8cc7\u8a0a\u74b0\u5883\u4e0d\u8a8d\u5f97\u5b83. + +UNSUPPORTED_PROPERTY = "{0}" \u4e0d\u662f\u652f\u63f4\u7684\u7279\u6027 + +NULL_PROPERTY_NAME = \u7279\u6027\u540d\u7a31\u53c3\u6578\u4e0d\u53ef\u70ba\u7a7a\u503c + +MUST_BE_X = \u7279\u6027 "{0}" \u5fc5\u9808\u662f\u985e\u578b {1} (\u800c\u975e {2}) \u7684\u57f7\u884c\u8655\u7406 + +# {0}, {1}, {2} - class name. e.g.: Instance of "com.test.implementation.Implementation" is substituting "com.test.abstractbase.AbstractType", but "com.test.implementation.Implementation" is bound to an anonymous type. +SUBSTITUTED_BY_ANONYMOUS_TYPE = "{1}" \u7684\u57f7\u884c\u8655\u7406\u5c07\u66ff\u4ee3 "{0}", \u4f46 "{2}" \u5df2\u9023\u7d50\u81f3\u533f\u540d\u985e\u578b. + +CYCLE_IN_MARSHALLER = \u5728\u7269\u4ef6\u5716\u8868\u4e2d\u5075\u6e2c\u5230\u5faa\u74b0. \u9019\u5c07\u5c0e\u81f4\u7121\u9650\u6df1\u7684 XML: {0} + +# {0} - class name +UNABLE_TO_DISCOVER_EVENTHANDLER = \u7121\u6cd5\u5217\u793a "{0}" \u7684\u65b9\u6cd5. \u82e5\u6b64\u985e\u5225\u4e2d\u6709\u4efb\u4f55\u4e8b\u4ef6\u56de\u547c\u8655\u7406\u7a0b\u5f0f, \u5c07\u6703\u88ab\u5ffd\u7565. + +ELEMENT_NEEDED_BUT_FOUND_DOCUMENT = \u767c\u73fe DOM \u6587\u4ef6 "{0}", \u4f46\u9700\u8981\u7684\u662f\u5143\u7d20. \u8acb\u6539\u7528 Document.getDocumentElement() \u4e26\u8a2d\u5b9a\u8a72\u7269\u4ef6. + +UNKNOWN_CLASS = {0} \u6216\u5176\u4efb\u4f55\u8d85\u7d1a\u985e\u5225\u90fd\u77e5\u9053\u6b64\u76f8\u95dc\u8cc7\u8a0a\u74b0\u5883. + +FAILED_TO_GENERATE_SCHEMA = \u7121\u6cd5\u7522\u751f\u7db1\u8981. + +ERROR_PROCESSING_SCHEMA = \u8655\u7406\u7db1\u8981\u6642\u767c\u751f\u932f\u8aa4. + +ILLEGAL_CONTENT = <{0}> \u4e2d\u6709\u7121\u6548\u7684 XML \u5167\u5bb9: "{1}". diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/MimeTypedTransducer.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/MimeTypedTransducer.class new file mode 100644 index 00000000..bb5b4bad Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/MimeTypedTransducer.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Name.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Name.class new file mode 100644 index 00000000..5e1f0ab4 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/Name.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/NameBuilder.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/NameBuilder.class new file 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a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/ArrayReferenceNodeProperty$MixedTextLoader.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/ArrayReferenceNodeProperty$MixedTextLoader.class new file mode 100644 index 00000000..c2d7388c Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/ArrayReferenceNodeProperty$MixedTextLoader.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/ArrayReferenceNodeProperty.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/ArrayReferenceNodeProperty.class new file mode 100644 index 00000000..427770f5 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/ArrayReferenceNodeProperty.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/AttributeProperty.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/AttributeProperty.class new file mode 100644 index 00000000..7d81ba3d Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/AttributeProperty.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/ListElementProperty.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/ListElementProperty.class new file mode 100644 index 00000000..e91842bf Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/ListElementProperty.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages.class new file mode 100644 index 00000000..6851dba1 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages.properties new file mode 100644 index 00000000..0f3280d9 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages.properties @@ -0,0 +1,16 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not in use anymore - commented. +UNSUBSTITUTABLE_TYPE = \ + type {0} is mapped to {1} but it cannot substitute {2} here + +UNEXPECTED_JAVA_TYPE = \ + Java class {0} is not allowed in this property. Expected types are: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_de.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_de.properties new file mode 100644 index 00000000..ba212b3e --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_de.properties @@ -0,0 +1,14 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not in use anymore - commented. +UNSUBSTITUTABLE_TYPE = Typ {0} ist {1} zugeordnet, kann jedoch {2} hier nicht ersetzen + +UNEXPECTED_JAVA_TYPE = Java-Klasse {0} ist in dieser Eigenschaft nicht zul\u00e4ssig. Folgende Typen werden erwartet: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_es.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_es.properties new file mode 100644 index 00000000..3230aece --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_es.properties @@ -0,0 +1,14 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not in use anymore - commented. +UNSUBSTITUTABLE_TYPE = el tipo {0} est\u00e1 asignado a {1}, pero no puede sustituir a {2} aqu\u00ed + +UNEXPECTED_JAVA_TYPE = La clase Java {0} no est\u00e1 permitida en esta propiedad. Los tipos esperados son: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_fr.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_fr.properties new file mode 100644 index 00000000..d3f917c7 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_fr.properties @@ -0,0 +1,14 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not in use anymore - commented. +UNSUBSTITUTABLE_TYPE = le type {0} est mapp\u00e9 avec {1} mais il ne peut pas remplacer {2} ici + +UNEXPECTED_JAVA_TYPE = La classe Java {0} n''est pas autoris\u00e9e dans cette propri\u00e9t\u00e9. Les types attendus sont : {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_it.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_it.properties new file mode 100644 index 00000000..f2880359 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_it.properties @@ -0,0 +1,14 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not in use anymore - commented. +UNSUBSTITUTABLE_TYPE = il tipo {0} \u00e8 mappato a {1} ma qui non pu\u00f2 sostituire {2} + +UNEXPECTED_JAVA_TYPE = La classe Java {0} non \u00e8 consentita in questa propriet\u00e0. I tipi previsti sono: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_ja.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_ja.properties new file mode 100644 index 00000000..aead9da4 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_ja.properties @@ -0,0 +1,14 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not in use anymore - commented. +UNSUBSTITUTABLE_TYPE = \u30bf\u30a4\u30d7{0}\u304c{1}\u306b\u30de\u30c3\u30d7\u3055\u308c\u3066\u3044\u307e\u3059\u304c\u3001\u3053\u3053\u3067{2}\u3092\u4ee3\u7528\u3059\u308b\u3053\u3068\u306f\u3067\u304d\u307e\u305b\u3093 + +UNEXPECTED_JAVA_TYPE = Java\u30af\u30e9\u30b9{0}\u306f\u3053\u306e\u30d7\u30ed\u30d1\u30c6\u30a3\u3067\u306f\u4f7f\u7528\u3067\u304d\u307e\u305b\u3093\u3002\u4e88\u671f\u3055\u308c\u308b\u30bf\u30a4\u30d7\u306f\u6b21\u306e\u3068\u304a\u308a\u3067\u3059: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_ko.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_ko.properties new file mode 100644 index 00000000..e83cc8df --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_ko.properties @@ -0,0 +1,14 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not in use anymore - commented. +UNSUBSTITUTABLE_TYPE = {0} \uc720\ud615\uc774 {1}\uc5d0 \ub9e4\ud551\ub418\uc5c8\uc9c0\ub9cc \uc5ec\uae30\uc11c {2}\uc744(\ub97c) \ub300\uccb4\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +UNEXPECTED_JAVA_TYPE = Java \ud074\ub798\uc2a4 {0}\uc740(\ub294) \uc774 \uc18d\uc131\uc5d0\uc11c \ud5c8\uc6a9\ub418\uc9c0 \uc54a\uc2b5\ub2c8\ub2e4. \ud544\uc694\ud55c \uc720\ud615: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_pt_BR.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_pt_BR.properties new file mode 100644 index 00000000..95f7d711 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_pt_BR.properties @@ -0,0 +1,14 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not in use anymore - commented. +UNSUBSTITUTABLE_TYPE = o tipo {0} foi mapeado para {1}, mas n\u00e3o pode substituir {2} aqui + +UNEXPECTED_JAVA_TYPE = A classe Java {0} n\u00e3o \u00e9 permitida nesta propriedade. Os tipos esperados s\u00e3o: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_zh_CN.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_zh_CN.properties new file mode 100644 index 00000000..8c6eaa69 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_zh_CN.properties @@ -0,0 +1,14 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not in use anymore - commented. +UNSUBSTITUTABLE_TYPE = \u7c7b\u578b{0}\u6620\u5c04\u5230{1}, \u4f46\u5b83\u4e0d\u80fd\u66ff\u4ee3\u6b64\u5904\u7684{2} + +UNEXPECTED_JAVA_TYPE = \u6b64\u5c5e\u6027\u4e2d\u4e0d\u5141\u8bb8\u6709 Java \u7c7b{0}\u3002\u6240\u9700\u7c7b\u578b\u4e3a: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_zh_TW.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_zh_TW.properties new file mode 100644 index 00000000..3593df77 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Messages_zh_TW.properties @@ -0,0 +1,14 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +# Not in use anymore - commented. +UNSUBSTITUTABLE_TYPE = \u985e\u578b {0} \u5c0d\u61c9\u81f3 {1}, \u4f46\u5176\u7121\u6cd5\u53d6\u4ee3\u6b64\u8655\u7684 {2} + +UNEXPECTED_JAVA_TYPE = \u4e0d\u5141\u8a31\u5728\u6b64\u7279\u6027\u4e2d\u4f7f\u7528 Java \u985e\u5225 {0}. \u9810\u671f\u7684\u985e\u578b\u70ba: {1} diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Property.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Property.class new file mode 100644 index 00000000..6cb2647f Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/property/Property.class differ diff --git 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b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Lister.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages.class new file mode 100644 index 00000000..77c50318 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages.properties new file mode 100644 index 00000000..7d342e17 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages.properties @@ -0,0 +1,28 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +UNABLE_TO_ACCESS_NON_PUBLIC_FIELD = \ + Unable to make {0}.{1} accessible. + +UNASSIGNABLE_TYPE = \ + The type of the field is {0}, but the type of the object is {1} + +# these are normally developer error, so they should be verbose. +NO_SETTER = \ + The property has a getter "{0}" but no setter. \ + For unmarshalling, please define setters. \ + (Or if this is a collection property, make sure that the getter returns a collection instance.) + +NO_GETTER = \ + The property has a setter "{0}" but no getter. \ + For marshaller, please define getters. + +INVALID_XML_ENUM_VALUE = \ + "{0}" is not a valid value for {1}. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_de.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_de.properties new file mode 100644 index 00000000..ab4da1c8 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_de.properties @@ -0,0 +1,19 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +UNABLE_TO_ACCESS_NON_PUBLIC_FIELD = {0}.{1} kann nicht zug\u00e4nglich gemacht werden. + +UNASSIGNABLE_TYPE = Der Typ des Feldes ist {0}, der Typ des Objekts ist jedoch {1} + +# these are normally developer error, so they should be verbose. +NO_SETTER = Die Eigenschaft enth\u00e4lt einen Getter "{0}", jedoch keinen Setter. F\u00fcr das Unmarshalling m\u00fcssen Sie Setter definieren. (Wenn es sich jedoch um eine Collection-Eigenschaft handelt, muss der Getter eine Collection-Instanz zur\u00fcckgeben.) + +NO_GETTER = Die Eigenschaft enth\u00e4lt einen Setter "{0}", jedoch keinen Getter. F\u00fcr das Marshalling m\u00fcssen Sie Getter definieren. + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_es.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_es.properties new file mode 100644 index 00000000..5c3b4a12 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_es.properties @@ -0,0 +1,19 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +UNABLE_TO_ACCESS_NON_PUBLIC_FIELD = No se ha podido permitir el acceso a {0}.{1}. + +UNASSIGNABLE_TYPE = El tipo del campo es {0}, pero el tipo del objeto es {1} + +# these are normally developer error, so they should be verbose. +NO_SETTER = La propiedad tiene un getter "{0}" pero no un setter. Para anular la canalizaci\u00f3n, defina setters. (O bien, si se trata de una propiedad de recopilaci\u00f3n, aseg\u00farese de que el getter devuelve una instancia de recopilaci\u00f3n.) + +NO_GETTER = La propiedad tiene un setter "{0}", pero no un getter. Defina getters para el marshaller. + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_fr.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_fr.properties new file mode 100644 index 00000000..b20156c8 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_fr.properties @@ -0,0 +1,19 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +UNABLE_TO_ACCESS_NON_PUBLIC_FIELD = Impossible de rendre {0}.{1} accessible. + +UNASSIGNABLE_TYPE = Le type du champ est {0}, mais le type de l''objet est {1} + +# these are normally developer error, so they should be verbose. +NO_SETTER = La propri\u00e9t\u00e9 comporte une m\u00e9thode get "{0}" mais aucune m\u00e9thode set. Pour la d\u00e9s\u00e9rialisation, d\u00e9finissez des m\u00e9thodes set. (S''il s''agit d''une propri\u00e9t\u00e9 de collection, assurez-vous que la m\u00e9thode get renvoie une instance de collection.) + +NO_GETTER = La propri\u00e9t\u00e9 comporte une m\u00e9thode set "{0}" mais aucune m\u00e9thode get. Pour le s\u00e9rialiseur, d\u00e9finissez des m\u00e9thodes get. + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_it.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_it.properties new file mode 100644 index 00000000..6f2ba541 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_it.properties @@ -0,0 +1,19 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +UNABLE_TO_ACCESS_NON_PUBLIC_FIELD = Impossibile rendere accessibile {0}.{1}. + +UNASSIGNABLE_TYPE = Il tipo del campo \u00e8 {0} mentre quello dell''oggetto \u00e8 {1} + +# these are normally developer error, so they should be verbose. +NO_SETTER = La propriet\u00e0 dispone di un getter "{0}" ma non di un setter. Per eseguire l''unmarshalling, definire i setter (oppure, se si tratta di una propriet\u00e0 della raccolta, assicurarsi che il getter restituisca un''istanza della raccolta). + +NO_GETTER = La propriet\u00e0 dispone di un setter "{0}" ma non di un getter. Per il marshaller, definire i getter. + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_ja.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_ja.properties new file mode 100644 index 00000000..543710e1 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_ja.properties @@ -0,0 +1,19 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +UNABLE_TO_ACCESS_NON_PUBLIC_FIELD = {0}.{1}\u3092\u30a2\u30af\u30bb\u30b9\u53ef\u80fd\u306b\u3067\u304d\u307e\u305b\u3093\u3002 + +UNASSIGNABLE_TYPE = \u30d5\u30a3\u30fc\u30eb\u30c9\u306e\u30bf\u30a4\u30d7\u306f{0}\u3067\u3059\u304c\u3001\u30aa\u30d6\u30b8\u30a7\u30af\u30c8\u306e\u30bf\u30a4\u30d7\u306f{1}\u3067\u3059 + +# these are normally developer error, so they should be verbose. +NO_SETTER = \u30d7\u30ed\u30d1\u30c6\u30a3\u306bgetter "{0}"\u304c\u3042\u308a\u307e\u3059\u304c\u3001setter\u304c\u3042\u308a\u307e\u305b\u3093\u3002\u30a2\u30f3\u30de\u30fc\u30b7\u30e3\u30ea\u30f3\u30b0\u306e\u305f\u3081\u306b\u3001setter\u3092\u5b9a\u7fa9\u3057\u3066\u304f\u3060\u3055\u3044(\u307e\u305f\u306f\u3001\u3053\u308c\u304c\u30b3\u30ec\u30af\u30b7\u30e7\u30f3\u30fb\u30d7\u30ed\u30d1\u30c6\u30a3\u306e\u5834\u5408\u306f\u3001getter\u304c\u30b3\u30ec\u30af\u30b7\u30e7\u30f3\u30fb\u30a4\u30f3\u30b9\u30bf\u30f3\u30b9\u3092\u8fd4\u3059\u3053\u3068\u3092\u78ba\u8a8d\u3057\u3066\u304f\u3060\u3055\u3044)\u3002 + +NO_GETTER = \u30d7\u30ed\u30d1\u30c6\u30a3\u306bsetter "{0}"\u304c\u3042\u308a\u307e\u3059\u304c\u3001getter\u304c\u3042\u308a\u307e\u305b\u3093\u3002marshaller\u306e\u305f\u3081\u306b\u3001getter\u3092\u5b9a\u7fa9\u3057\u3066\u304f\u3060\u3055\u3044\u3002 + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_ko.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_ko.properties new file mode 100644 index 00000000..0f5c4dc5 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_ko.properties @@ -0,0 +1,19 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +UNABLE_TO_ACCESS_NON_PUBLIC_FIELD = {0}.{1}\uc744(\ub97c) \uc561\uc138\uc2a4 \uac00\ub2a5\ud55c \uc0c1\ud0dc\ub85c \uc124\uc815\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. + +UNASSIGNABLE_TYPE = \ud544\ub4dc\uc758 \uc720\ud615\uc740 {0}, \uac1d\uccb4\uc758 \uc720\ud615\uc740 {1}\uc785\ub2c8\ub2e4. + +# these are normally developer error, so they should be verbose. +NO_SETTER = \uc18d\uc131\uc5d0 getter "{0}"\uc740(\ub294) \uc788\uc9c0\ub9cc setter\ub294 \uc5c6\uc2b5\ub2c8\ub2e4. \ub9c8\uc15c\ub9c1 \ud574\uc81c\uc5d0 \ub300\ud55c setter\ub97c \uc815\uc758\ud558\uc2ed\uc2dc\uc624. \ub610\ub294 \uc774 \uc18d\uc131\uc774 \ubaa8\uc74c \uc18d\uc131\uc77c \uacbd\uc6b0 getter\uac00 \ubaa8\uc74c \uc778\uc2a4\ud134\uc2a4\ub97c \ubc18\ud658\ud558\ub294\uc9c0 \ud655\uc778\ud558\uc2ed\uc2dc\uc624. + +NO_GETTER = \uc18d\uc131\uc5d0 setter "{0}"\uc740(\ub294) \uc788\uc9c0\ub9cc getter\ub294 \uc5c6\uc2b5\ub2c8\ub2e4. \ub9c8\uc15c\ub7ec\uc5d0 \ub300\ud55c getter\ub97c \uc815\uc758\ud558\uc2ed\uc2dc\uc624. + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_pt_BR.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_pt_BR.properties new file mode 100644 index 00000000..4e5299d2 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_pt_BR.properties @@ -0,0 +1,19 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +UNABLE_TO_ACCESS_NON_PUBLIC_FIELD = N\u00e3o \u00e9 poss\u00edvel tornar {0}.{1} acess\u00edvel. + +UNASSIGNABLE_TYPE = O tipo de campo \u00e9 {0}, mas o tipo de objeto \u00e9 {1} + +# these are normally developer error, so they should be verbose. +NO_SETTER = A propriedade tem um getter "{0}", mas nenhum setter. Para cancelar o marshal, defina os setters. (Ou, se esta for uma propriedade de coleta, certifique-se de que getter retorne uma inst\u00e2ncia da coleta). + +NO_GETTER = A propriedade tem um setter "{0}", mas nenhum getter. Para marshaller, defina os getters. + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_zh_CN.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_zh_CN.properties new file mode 100644 index 00000000..ba4a74c2 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_zh_CN.properties @@ -0,0 +1,19 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +UNABLE_TO_ACCESS_NON_PUBLIC_FIELD = \u65e0\u6cd5\u4f7f{0}.{1}\u6210\u4e3a\u53ef\u8bbf\u95ee\u7684\u3002 + +UNASSIGNABLE_TYPE = \u5b57\u6bb5\u7684\u7c7b\u578b\u4e3a{0}, \u800c\u5bf9\u8c61\u7684\u7c7b\u578b\u4e3a{1} + +# these are normally developer error, so they should be verbose. +NO_SETTER = \u6b64\u5c5e\u6027\u5177\u6709 getter "{0}" \u4f46\u6ca1\u6709 setter\u3002\u8981\u89e3\u7f16\u96c6, \u8bf7\u5b9a\u4e49 setter\u3002(\u5982\u679c\u8fd9\u662f\u96c6\u5408\u5c5e\u6027, \u8bf7\u786e\u4fdd getter \u8fd4\u56de\u96c6\u5408\u5b9e\u4f8b\u3002) + +NO_GETTER = \u6b64\u5c5e\u6027\u5177\u6709 setter "{0}" \u4f46\u6ca1\u6709 getter\u3002\u8981\u7528\u4e8e\u7f16\u96c6\u5668, \u8bf7\u5b9a\u4e49 getter\u3002 + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_zh_TW.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_zh_TW.properties new file mode 100644 index 00000000..8031b915 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/Messages_zh_TW.properties @@ -0,0 +1,19 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +UNABLE_TO_ACCESS_NON_PUBLIC_FIELD = \u7121\u6cd5\u5c07 {0}.{1} \u8a2d\u70ba\u53ef\u5b58\u53d6. + +UNASSIGNABLE_TYPE = \u6b04\u4f4d\u7684\u985e\u578b\u70ba {0}, \u4f46\u7269\u4ef6\u7684\u985e\u578b\u70ba {1} + +# these are normally developer error, so they should be verbose. +NO_SETTER = \u7279\u6027\u5305\u542b getter "{0}", \u4f46\u672a\u5305\u542b setter. \u82e5\u8981\u89e3\u9664\u5c01\u9001\u8655\u7406 (Unmarshal), \u8acb\u5b9a\u7fa9 setter. (\u6216\u8005, \u82e5\u9019\u662f\u96c6\u5408\u7279\u6027, \u8acb\u78ba\u5b9a getter \u6703\u50b3\u56de\u96c6\u5408\u57f7\u884c\u8655\u7406.) + +NO_GETTER = \u7279\u6027\u5305\u542b setter "{0}", \u4f46\u672a\u5305\u542b getter. \u8acb\u5b9a\u7fa9\u5c01\u9001\u8655\u7406\u7a0b\u5f0f (Marshaller) \u7684 getter. + diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/NullSafeAccessor.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/NullSafeAccessor.class new file mode 100644 index 00000000..0a6a38a9 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/NullSafeAccessor.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/PrimitiveArrayListerBoolean$1.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/reflect/PrimitiveArrayListerBoolean$1.class new file mode 100644 index 00000000..5938f539 Binary files /dev/null and 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00000000..dd580480 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages.properties new file mode 100644 index 00000000..656dd5c7 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages.properties @@ -0,0 +1,41 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +NOT_A_QNAME = \ + {0} is not a valid QName + +# Not concatenated with any other string. +UNRECOGNIZED_TYPE_NAME = \ + unrecognized type name: {0} + +UNRECOGNIZED_TYPE_NAME_MAYBE = \ + unrecognized type name: {0}. Did you mean {1}? + +UNRESOLVED_IDREF = \ + Undefined ID "{0}". + +# Printed after [ERROR]: string. +UNEXPECTED_ELEMENT = \ + unexpected element (uri:"{0}", local:"{1}"). Expected elements are {2} + +UNEXPECTED_TEXT = \ + unexpected text "{0}" + +UNABLE_TO_CREATE_MAP = \ + The type of the field is {0}, but JAXB doesn't know how to create an instance \ + assignable to it. Create an instance in the constructor, or use a type that can \ + be assignable from HashMap. + +UNINTERNED_STRINGS = \ + Namespace URIs and local names to the unmarshaller needs to be interned. + +# user have to set Logger.getLogger("com.sun.xml.bind").setLevel(Level.FINEST) +ERRORS_LIMIT_EXCEEDED = \ + Errors limit exceeded. To receive all errors set 'com.sun.xml.bind' logger to FINEST level. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_de.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_de.properties new file mode 100644 index 00000000..00e99d21 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_de.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +NOT_A_QNAME = {0} ist kein g\u00fcltiger QName + +# Not concatenated with any other string. +UNRECOGNIZED_TYPE_NAME = unbekannter Typname: {0} + +UNRECOGNIZED_TYPE_NAME_MAYBE = unbekannter Typname: {0}. Haben Sie {1} gemeint? + +UNRESOLVED_IDREF = Undefinierte ID "{0}". + +# Printed after [ERROR]: string. +UNEXPECTED_ELEMENT = unerwartetes Element (URI:"{0}", lokal:"{1}"). Erwartete Elemente sind {2} + +UNEXPECTED_TEXT = unerwarteter Text "{0}" + +UNABLE_TO_CREATE_MAP = Der Typ des Feldes ist {0}, JAXB wei\u00df jedoch nicht, wie eine Instanz erstellt werden soll, die ihm zugewiesen werden kann. Erstellen Sie eine Instanz im Konstruktor, oder verwenden Sie einen Typ, der aus HashMap zugewiesen werden kann. + +UNINTERNED_STRINGS = Die Methode intern() muss f\u00fcr Namespace-URIs und lokale Unmarshaller-Namen angewendet werden. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_es.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_es.properties new file mode 100644 index 00000000..22726c67 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_es.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +NOT_A_QNAME = {0} no es un QName v\u00e1lido + +# Not concatenated with any other string. +UNRECOGNIZED_TYPE_NAME = Nombre de tipo no reconocido: {0}. + +UNRECOGNIZED_TYPE_NAME_MAYBE = nombre de tipo no reconocido: {0}. \u00bfQuiso decir {1}? + +UNRESOLVED_IDREF = Identificador no definido "{0}". + +# Printed after [ERROR]: string. +UNEXPECTED_ELEMENT = elemento inesperado (URI:"{0}", local:"{1}"). Los elementos esperados son {2} + +UNEXPECTED_TEXT = texto inesperado "{0}" + +UNABLE_TO_CREATE_MAP = El tipo del campo es {0}, pero JAXB no sabe c\u00f3mo crear una instancia que se le pueda asignar. Cree una instancia en el constructor o utilice un tipo que se pueda asignar desde HashMap. + +UNINTERNED_STRINGS = Se debe aplicar el m\u00e9todo intern() a los URI de espacios de nombres y los nombres locales del unmarshaller. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_fr.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_fr.properties new file mode 100644 index 00000000..0e3a9955 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_fr.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +NOT_A_QNAME = {0} n''est pas un QName valide + +# Not concatenated with any other string. +UNRECOGNIZED_TYPE_NAME = nom de type non reconnu : {0} + +UNRECOGNIZED_TYPE_NAME_MAYBE = non de type non reconnu : {0}. Vouliez-vous dire {1} ? + +UNRESOLVED_IDREF = ID "{0}" non d\u00e9fini. + +# Printed after [ERROR]: string. +UNEXPECTED_ELEMENT = \u00e9l\u00e9ment inattendu (URI : "{0}", local : "{1}"). Les \u00e9l\u00e9ments attendus sont {2} + +UNEXPECTED_TEXT = texte "{0}" inattendu + +UNABLE_TO_CREATE_MAP = Le type du champ est {0}, mais JAXB ne sait pas comment cr\u00e9er une instance qui peut lui \u00eatre affect\u00e9e. Cr\u00e9ez une instance dans le constructeur ou utilisez un type qui peut \u00eatre affect\u00e9 \u00e0 partir de HashMap. + +UNINTERNED_STRINGS = La m\u00e9thode intern() doit \u00eatre appliqu\u00e9e aux URI d'espace de noms et aux noms locaux du d\u00e9s\u00e9rialiseur. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_it.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_it.properties new file mode 100644 index 00000000..856932cf --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_it.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +NOT_A_QNAME = {0} non \u00e8 un QName valido + +# Not concatenated with any other string. +UNRECOGNIZED_TYPE_NAME = nome tipo non riconosciuto: {0} + +UNRECOGNIZED_TYPE_NAME_MAYBE = nome tipo non riconosciuto: {0}. Si intendeva {1}? + +UNRESOLVED_IDREF = ID non definito: "{0}". + +# Printed after [ERROR]: string. +UNEXPECTED_ELEMENT = elemento non previsto (uri:"{0}", local:"{1}"). Gli elementi previsti sono {2} + +UNEXPECTED_TEXT = testo non previsto "{0}" + +UNABLE_TO_CREATE_MAP = Il tipo del campo \u00e8 {0} ma JAXB non \u00e8 in grado di creare un''istanza a esso assegnabile. Creare un''istanza nel costruttore o usare un tipo che possa essere assegnabile da HashMap. + +UNINTERNED_STRINGS = Il metodo intern() deve essere applicato agli URI dello spazio di nomi e ai nomi locali dell'unmarshaller. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_ja.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_ja.properties new file mode 100644 index 00000000..78ac8d2e --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_ja.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +NOT_A_QNAME = {0}\u306f\u6709\u52b9\u306aQName\u3067\u306f\u3042\u308a\u307e\u305b\u3093 + +# Not concatenated with any other string. +UNRECOGNIZED_TYPE_NAME = \u30bf\u30a4\u30d7\u306e\u540d\u524d\u3092\u8a8d\u8b58\u3067\u304d\u307e\u305b\u3093: {0} + +UNRECOGNIZED_TYPE_NAME_MAYBE = \u30bf\u30a4\u30d7\u306e\u540d\u524d\u3092\u8a8d\u8b58\u3067\u304d\u307e\u305b\u3093: {0}\u3002{1}\u306e\u8aa4\u308a\u3067\u3042\u308b\u53ef\u80fd\u6027\u304c\u3042\u308a\u307e\u3059\u3002 + +UNRESOLVED_IDREF = \u672a\u5b9a\u7fa9\u306eID "{0}"\u3067\u3059\u3002 + +# Printed after [ERROR]: string. +UNEXPECTED_ELEMENT = \u4e88\u671f\u3057\u306a\u3044\u8981\u7d20(URI:"{0}"\u3001\u30ed\u30fc\u30ab\u30eb:"{1}")\u3067\u3059\u3002\u4e88\u671f\u3055\u308c\u308b\u8981\u7d20\u306f{2}\u3067\u3059 + +UNEXPECTED_TEXT = \u4e88\u671f\u3057\u306a\u3044\u30c6\u30ad\u30b9\u30c8"{0}" + +UNABLE_TO_CREATE_MAP = \u30d5\u30a3\u30fc\u30eb\u30c9\u306e\u30bf\u30a4\u30d7\u306f{0}\u3067\u3059\u304c\u3001JAXB\u3067\u306f\u5272\u5f53\u53ef\u80fd\u306a\u30a4\u30f3\u30b9\u30bf\u30f3\u30b9\u306e\u4f5c\u6210\u65b9\u6cd5\u304c\u4e0d\u660e\u3067\u3059\u3002\u30b3\u30f3\u30b9\u30c8\u30e9\u30af\u30bf\u5185\u306b\u30a4\u30f3\u30b9\u30bf\u30f3\u30b9\u3092\u4f5c\u6210\u3059\u308b\u304b\u3001HashMap\u304b\u3089\u5272\u5f53\u53ef\u80fd\u306a\u30bf\u30a4\u30d7\u3092\u4f7f\u7528\u3057\u3066\u304f\u3060\u3055\u3044\u3002 + +UNINTERNED_STRINGS = unmarshaller\u306b\u5bfe\u3059\u308b\u30cd\u30fc\u30e0\u30b9\u30da\u30fc\u30b9URI\u304a\u3088\u3073\u30ed\u30fc\u30ab\u30eb\u540d\u3092\u30a4\u30f3\u30bf\u30fc\u30f3\u5316\u3059\u308b\u5fc5\u8981\u304c\u3042\u308a\u307e\u3059\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_ko.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_ko.properties new file mode 100644 index 00000000..87014797 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_ko.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +NOT_A_QNAME = {0}\uc740(\ub294) \uc801\ud569\ud55c QName\uc774 \uc544\ub2d9\ub2c8\ub2e4. + +# Not concatenated with any other string. +UNRECOGNIZED_TYPE_NAME = \uc778\uc2dd\ud560 \uc218 \uc5c6\ub294 \uc720\ud615 \uc774\ub984: {0} + +UNRECOGNIZED_TYPE_NAME_MAYBE = \uc778\uc2dd\ud560 \uc218 \uc5c6\ub294 \uc720\ud615 \uc774\ub984: {0}. {1}\uc744(\ub97c) \uc0ac\uc6a9\ud558\ub824\uace0 \ud55c \uac83\uc785\ub2c8\uae4c? + +UNRESOLVED_IDREF = "{0}"\uc740(\ub294) \uc815\uc758\ub418\uc9c0 \uc54a\uc740 ID\uc785\ub2c8\ub2e4. + +# Printed after [ERROR]: string. +UNEXPECTED_ELEMENT = \uc608\uc0c1\uce58 \uc54a\uc740 \uc694\uc18c(URI: "{0}", \ub85c\uceec: "{1}")\uc785\ub2c8\ub2e4. \ud544\uc694\ud55c \uc694\uc18c\ub294 {2}\uc785\ub2c8\ub2e4. + +UNEXPECTED_TEXT = \uc608\uc0c1\uce58 \uc54a\uc740 "{0}" \ud14d\uc2a4\ud2b8 + +UNABLE_TO_CREATE_MAP = \uc774 \ud544\ub4dc\uc758 \uc720\ud615\uc740 {0}\uc774\uc9c0\ub9cc JAXB\uac00 \uc774 \ud544\ub4dc\uc5d0 \uc9c0\uc815 \uac00\ub2a5\ud55c \uc778\uc2a4\ud134\uc2a4\ub97c \uc0dd\uc131\ud560 \uc218 \uc5c6\uc2b5\ub2c8\ub2e4. \uc0dd\uc131\uc790\uc5d0 \uc778\uc2a4\ud134\uc2a4\ub97c \uc0dd\uc131\ud558\uac70\ub098 HashMap\uc5d0\uc11c \uc9c0\uc815 \uac00\ub2a5\ud55c \uc720\ud615\uc744 \uc0ac\uc6a9\ud558\uc2ed\uc2dc\uc624. + +UNINTERNED_STRINGS = \uc5b8\ub9c8\uc15c\ub7ec\uc5d0 \ub300\ud55c \ub124\uc784\uc2a4\ud398\uc774\uc2a4 URI \ubc0f \ub85c\uceec \uc774\ub984\uc5d0 \ub300\ud574 intern() \uba54\uc18c\ub4dc\ub97c \ud638\ucd9c\ud574\uc57c \ud569\ub2c8\ub2e4. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_pt_BR.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_pt_BR.properties new file mode 100644 index 00000000..855e8f36 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_pt_BR.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +NOT_A_QNAME = {0} n\u00e3o \u00e9 um QName v\u00e1lido + +# Not concatenated with any other string. +UNRECOGNIZED_TYPE_NAME = nome do tipo n\u00e3o reconhecido: {0} + +UNRECOGNIZED_TYPE_NAME_MAYBE = nome do tipo n\u00e3o reconhecido: {0}. Voc\u00ea quis dizer {1}? + +UNRESOLVED_IDREF = ID Indefinido "{0}". + +# Printed after [ERROR]: string. +UNEXPECTED_ELEMENT = elemento inesperado (uri:"{0}", local:"{1}"). Os elementos esperados s\u00e3o {2} + +UNEXPECTED_TEXT = texto inesperado "{0}" + +UNABLE_TO_CREATE_MAP = O tipo de campo \u00e9 {0}, mas JAXB n\u00e3o sabe como criar uma inst\u00e2ncia atribu\u00edvel a ele. Crie uma inst\u00e2ncia no construtor ou use um tipo que pode ser atribu\u00edvel do HashMap. + +UNINTERNED_STRINGS = URIs de namespace e nomes locais para o unmarshaller precisam ser internos. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_zh_CN.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_zh_CN.properties new file mode 100644 index 00000000..5fb1c500 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_zh_CN.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +NOT_A_QNAME = {0}\u4e0d\u662f\u6709\u6548\u7684 QName + +# Not concatenated with any other string. +UNRECOGNIZED_TYPE_NAME = \u65e0\u6cd5\u8bc6\u522b\u7c7b\u578b\u540d\u79f0: {0} + +UNRECOGNIZED_TYPE_NAME_MAYBE = \u65e0\u6cd5\u8bc6\u522b\u7c7b\u578b\u540d\u79f0: {0}\u3002\u662f\u5426\u6253\u7b97{1}? + +UNRESOLVED_IDREF = \u672a\u5b9a\u4e49\u7684 ID "{0}"\u3002 + +# Printed after [ERROR]: string. +UNEXPECTED_ELEMENT = \u610f\u5916\u7684\u5143\u7d20 (uri:"{0}", local:"{1}")\u3002\u6240\u9700\u5143\u7d20\u4e3a{2} + +UNEXPECTED_TEXT = \u610f\u5916\u7684\u6587\u672c "{0}" + +UNABLE_TO_CREATE_MAP = \u6b64\u5b57\u6bb5\u7684\u7c7b\u578b\u4e3a{0}, \u4f46 JAXB \u4e0d\u77e5\u9053\u5982\u4f55\u521b\u5efa\u53ef\u5206\u914d\u7ed9\u8be5\u7c7b\u578b\u7684\u5b9e\u4f8b\u3002\u8bf7\u5728\u6784\u9020\u5668\u4e2d\u521b\u5efa\u5b9e\u4f8b, \u6216\u8005\u4f7f\u7528\u53ef\u4ece HashMap \u5206\u914d\u7684\u7c7b\u578b\u3002 + +UNINTERNED_STRINGS = \u89e3\u7f16\u96c6\u5668\u7684\u540d\u79f0\u7a7a\u95f4 URI \u548c\u672c\u5730\u540d\u79f0\u9700\u8981\u4fdd\u7559\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_zh_TW.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_zh_TW.properties new file mode 100644 index 00000000..a31f1fc3 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Messages_zh_TW.properties @@ -0,0 +1,27 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +NOT_A_QNAME = {0} \u4e0d\u662f\u6709\u6548\u7684 QName + +# Not concatenated with any other string. +UNRECOGNIZED_TYPE_NAME = \u7121\u6cd5\u8fa8\u8b58\u7684\u985e\u578b\u540d\u7a31: {0} + +UNRECOGNIZED_TYPE_NAME_MAYBE = \u7121\u6cd5\u8fa8\u8b58\u7684\u985e\u578b\u540d\u7a31: {0}. \u60a8\u6307\u7684\u662f {1} \u55ce? + +UNRESOLVED_IDREF = \u672a\u5b9a\u7fa9\u7684 ID "{0}". + +# Printed after [ERROR]: string. +UNEXPECTED_ELEMENT = \u672a\u9810\u671f\u7684\u5143\u7d20 (URI:"{0}", \u672c\u6a5f:"{1}"). \u9810\u671f\u7684\u5143\u7d20\u70ba {2} + +UNEXPECTED_TEXT = \u672a\u9810\u671f\u7684\u6587\u5b57 "{0}" + +UNABLE_TO_CREATE_MAP = \u6b04\u4f4d\u7684\u985e\u578b\u70ba {0}, \u4f46 JAXB \u4e0d\u77e5\u9053\u5982\u4f55\u5efa\u7acb\u53ef\u6307\u5b9a\u7d66\u5b83\u7684\u57f7\u884c\u8655\u7406. \u8acb\u5728\u5efa\u69cb\u5b50\u4e2d\u5efa\u7acb\u57f7\u884c\u8655\u7406, \u6216\u4f7f\u7528\u53ef\u5f9e HashMap \u6307\u5b9a\u7684\u985e\u578b. + +UNINTERNED_STRINGS = \u5fc5\u9808\u99d0\u7559 (intern) \u89e3\u9664\u5c01\u9001\u8655\u7406\u7a0b\u5f0f (Unmarshaller) \u7684\u547d\u540d\u7a7a\u9593 URI \u8207\u672c\u6a5f\u540d\u7a31. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Patcher.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Patcher.class new file mode 100644 index 00000000..a730fca4 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/Patcher.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/ProxyLoader.class 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a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/StAXStreamConnector$1.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/StAXStreamConnector$1.class new file mode 100644 index 00000000..c3c40988 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/StAXStreamConnector$1.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/StAXStreamConnector.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/StAXStreamConnector.class new file mode 100644 index 00000000..f5db2e58 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/StAXStreamConnector.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/StructureLoader$1.class 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--git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/ValuePropertyLoader.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/ValuePropertyLoader.class new file mode 100644 index 00000000..2e05555e Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/ValuePropertyLoader.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/WildcardLoader.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/WildcardLoader.class new file mode 100644 index 00000000..13fac0e7 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/WildcardLoader.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/runtime/unmarshaller/XmlVisitor$TextPredictor.class 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a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Form$2.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Form$2.class new file mode 100644 index 00000000..3881255d Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Form$2.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Form$3.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Form$3.class new file mode 100644 index 00000000..cf214162 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Form$3.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Form.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Form.class new file mode 100644 index 00000000..7c4c072d Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Form.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/GroupKind.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/GroupKind.class new file mode 100644 index 00000000..e866d795 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/GroupKind.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages.class b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages.class new file mode 100644 index 00000000..a9f85de7 Binary files /dev/null and b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages.properties new file mode 100644 index 00000000..2aa59bcc --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages.properties @@ -0,0 +1,16 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ANONYMOUS_TYPE_CYCLE= Error occured during schema generation, however the schema could be generated. \ +There is a circular dependency on an element in your schema: {0} \ +This element \ +is not defined as global element and thus references were not generated and \ +the type has been inlined where possible. To allow references for the type, add \ +XmlRootElement annotation to your type definition class. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_de.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_de.properties new file mode 100644 index 00000000..dff4683f --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_de.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ANONYMOUS_TYPE_CYCLE= Bei der Schemagenerierung ist ein Fehler aufgetreten, das Schema konnte jedoch generiert werden. Es ist eine zyklische Abh\u00e4ngigkeit von einem Element in Ihrem Schema vorhanden: {0} Dieses Element ist nicht als globales Element definiert, somit wurden keine Referenzen generiert und der Typ wurde wenn m\u00f6glich eingebettet. Um Referenzen f\u00fcr den Typ zuzulassen, f\u00fcgen Sie eine XmlRootElement-Annotation der Typdefinitionsklasse hinzu. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_es.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_es.properties new file mode 100644 index 00000000..8afda0e2 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_es.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ANONYMOUS_TYPE_CYCLE= Se ha producido un error durante la generaci\u00f3n del esquema, aunque el esquema se ha podido generar. Existe una dependencia circular en un elemento del esquema: {0} Este elemento no est\u00e1 definido como un elemento global y, por lo tanto, no se han generado referencias y el tipo se ha puesto en l\u00ednea cuando ha sido posible. Para permitir referencias para el tipo, agregue la anotaci\u00f3n XmlRootElement a la clase de definici\u00f3n de tipos. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_fr.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_fr.properties new file mode 100644 index 00000000..7748c20c --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_fr.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ANONYMOUS_TYPE_CYCLE= Une erreur s''est produite lors de la g\u00e9n\u00e9ration du sch\u00e9ma, mais ce dernier a pu \u00eatre g\u00e9n\u00e9r\u00e9. Il existe une d\u00e9pendance circulaire sur un \u00e9l\u00e9ment du sch\u00e9ma : {0}. Cet \u00e9l\u00e9ment n''est pas d\u00e9fini en tant qu''\u00e9l\u00e9ment global, les r\u00e9f\u00e9rences n''ont donc pas \u00e9t\u00e9 g\u00e9n\u00e9r\u00e9es et le type a \u00e9t\u00e9 incorpor\u00e9 l\u00e0 o\u00f9 cela \u00e9tait possible. Pour autoriser les r\u00e9f\u00e9rences pour le type, ajoutez l''annotation XmlRootElement \u00e0 la classe de d\u00e9finition du type. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_it.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_it.properties new file mode 100644 index 00000000..62b02735 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_it.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ANONYMOUS_TYPE_CYCLE= Si \u00e8 verificato un errore durante la generazione dello schema, tuttavia \u00e8 stato possibile generare quest''ultimo. Esiste una dipendenza circolare su un elemento nello schema: {0} Questo elemento non \u00e8 definito come elemento globale e pertanto non sono stati generati riferimenti e il tipo \u00e8 inserito in linea dove possibile. Per consentire i riferimenti per il tipo, aggiungere l''annotazione XmlRootElement alla classe di definizione del tipo in uso. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_ja.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_ja.properties new file mode 100644 index 00000000..c0677e2c --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_ja.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ANONYMOUS_TYPE_CYCLE= \u30b9\u30ad\u30fc\u30de\u751f\u6210\u4e2d\u306b\u30a8\u30e9\u30fc\u304c\u767a\u751f\u3057\u307e\u3057\u305f\u304c\u3001\u30b9\u30ad\u30fc\u30de\u3092\u751f\u6210\u3067\u304d\u307e\u3057\u305f\u3002\u30b9\u30ad\u30fc\u30de\u5185\u306e\u8981\u7d20\u306b\u5faa\u74b0\u4f9d\u5b58\u95a2\u4fc2\u304c\u3042\u308a\u307e\u3059: {0}\u3002\u3053\u306e\u8981\u7d20\u306f\u30b0\u30ed\u30fc\u30d0\u30eb\u8981\u7d20\u3068\u3057\u3066\u5b9a\u7fa9\u3055\u308c\u3066\u3044\u306a\u3044\u305f\u3081\u3001\u53c2\u7167\u306f\u751f\u6210\u3055\u308c\u305a\u3001\u30bf\u30a4\u30d7\u306f\u4f7f\u7528\u53ef\u80fd\u306a\u5834\u6240\u3067\u30a4\u30f3\u30e9\u30a4\u30f3\u5316\u3055\u308c\u3066\u3044\u307e\u3059\u3002\u30bf\u30a4\u30d7\u306e\u53c2\u7167\u3092\u8a31\u53ef\u3059\u308b\u306b\u306f\u3001\u30bf\u30a4\u30d7\u5b9a\u7fa9\u30af\u30e9\u30b9\u306bXmlRootElement\u6ce8\u91c8\u3092\u8ffd\u52a0\u3057\u307e\u3059\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_ko.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_ko.properties new file mode 100644 index 00000000..38bd391e --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_ko.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ANONYMOUS_TYPE_CYCLE= \uc2a4\ud0a4\ub9c8 \uc0dd\uc131 \uc911 \uc624\ub958\uac00 \ubc1c\uc0dd\ud588\uc9c0\ub9cc \uc2a4\ud0a4\ub9c8\ub97c \uc0dd\uc131\ud560 \uc218 \uc788\uc5c8\uc2b5\ub2c8\ub2e4. \uc2a4\ud0a4\ub9c8\uc758 \uc694\uc18c\uc5d0 \uc21c\ud658 \uc885\uc18d\uc131\uc774 \uc788\uc74c: {0}. \uc774 \uc694\uc18c\ub294 \uc804\uc5ed \uc694\uc18c\ub85c \uc815\uc758\ub418\uc9c0 \uc54a\uc544 \ucc38\uc870\uac00 \uc0dd\uc131\ub418\uc9c0 \uc54a\uc558\uc73c\uba70 \uac00\ub2a5\ud55c \uacbd\uc6b0 \uc720\ud615\uc774 \uc778\ub77c\uc778\ub418\uc5c8\uc2b5\ub2c8\ub2e4. \uc720\ud615\uc5d0 \ub300\ud55c \ucc38\uc870\ub97c \ud5c8\uc6a9\ud558\ub824\uba74 \uc720\ud615 \uc815\uc758 \ud074\ub798\uc2a4\uc5d0 XmlRootElement \uc8fc\uc11d\uc744 \ucd94\uac00\ud558\uc2ed\uc2dc\uc624. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_pt_BR.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_pt_BR.properties new file mode 100644 index 00000000..808da112 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_pt_BR.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ANONYMOUS_TYPE_CYCLE= Ocorreu um erro durante a gera\u00e7\u00e3o do esquema, no entanto, foi poss\u00edvel ger\u00e1-lo. H\u00e1 uma depend\u00eancia circular ou um elemento em seu esquema: {0} Este elemento n\u00e3o foi definido como elemento global e, por isso, as refer\u00eancias n\u00e3o foram geradas e o tipo foi alinhado, quando poss\u00edvel. Para permitir refer\u00eancias ao tipo, adicione a anota\u00e7\u00e3o XmlRootElement \u00e0 classe de defini\u00e7\u00e3o do tipo. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_zh_CN.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_zh_CN.properties new file mode 100644 index 00000000..22de54a7 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_zh_CN.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ANONYMOUS_TYPE_CYCLE= \u6a21\u5f0f\u751f\u6210\u671f\u95f4\u51fa\u9519, \u4f46\u53ef\u4ee5\u751f\u6210\u6a21\u5f0f\u3002\u6a21\u5f0f\u4e2d\u7684\u67d0\u4e00\u5143\u7d20\u5b58\u5728\u5faa\u73af\u76f8\u5173\u6027: {0}\u3002\u6b64\u5143\u7d20\u672a\u5b9a\u4e49\u4e3a\u5168\u5c40\u5143\u7d20, \u56e0\u6b64\u672a\u751f\u6210\u5f15\u7528\u5e76\u5df2\u5c3d\u53ef\u80fd\u5730\u5c06\u7c7b\u578b\u5185\u5d4c\u3002\u8981\u5141\u8bb8\u7c7b\u578b\u7684\u5f15\u7528, \u8bf7\u5411\u7c7b\u578b\u5b9a\u4e49\u7c7b\u6dfb\u52a0 XmlRootElement \u6ce8\u91ca\u3002 diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_zh_TW.properties b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_zh_TW.properties new file mode 100644 index 00000000..0e16484a --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/Messages_zh_TW.properties @@ -0,0 +1,11 @@ +# +# Copyright (c) 1997, 2021 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ANONYMOUS_TYPE_CYCLE= \u7db1\u8981\u7522\u751f\u671f\u9593\u767c\u751f\u932f\u8aa4, \u4f46\u53ef\u4ee5\u7522\u751f\u7db1\u8981. \u60a8\u7db1\u8981\u4e2d\u7684\u67d0\u500b\u5143\u7d20\u6709\u5faa\u74b0\u76f8\u4f9d\u6027: {0}. \u6b64\u5143\u7d20\u672a\u5b9a\u7fa9\u70ba\u5168\u57df\u5143\u7d20, \u56e0\u6b64\u672a\u7522\u751f\u53c3\u7167, \u4e26\u4e14\u5df2\u76e1\u53ef\u80fd\u5167\u7f6e\u8a72\u985e\u578b. \u82e5\u8981\u5141\u8a31\u8a72\u985e\u578b\u7684\u53c3\u7167, \u8acb\u65b0\u589e XmlRootElement \u8a3b\u89e3\u81f3\u60a8\u7684\u985e\u578b\u5b9a\u7fa9\u985e\u5225. diff --git a/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/MultiMap.class 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b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/xmlschema/xmlschema-for-jaxb.rng new file mode 100644 index 00000000..2a6c46b8 --- /dev/null +++ b/workflow/apps/java/clustering/bin/com/sun/xml/bind/v2/schemagen/xmlschema/xmlschema-for-jaxb.rng @@ -0,0 +1,1566 @@ + + + + + + + RELAX NG schema for XML Schema by Jeni Tennison. Based on + XML + Schema Part I: Structures Recommendation and XML Schema Part + II: Datatypes. + + + + Amended to comply with 10 August 2001 Tutorial. + + Removed key attributes. + Replaced not element with except elements. + + Replaced multiple consecutive optional attributes to use the + zeroOrMore/choice pattern. + + + Removed interleave elements inside list elements (which are no longer + permitted). + + + + + + This allows any number of attributes that are not in the XML Schema + namespace or are in no namespace. This is somewhat more complicated than + the XML Schema anyAttribute equivalent. + + + + + + + + + This allows any number of attributes that are not in the XML Schema + namespace or are in no namespace, an optional id attribute of type ID, + and an optional annotation element. This is used as the basis for many + element content models. + + + + + + + + + + + + + + + This gives the content model of the top level of the schema. + + + + + + + + + + + + This gives the components that can be redefined within the redefine + element. They also occur at the top level of the schema. + + + + + + + + + + + This gives the values for the various form attributes: + elementFormDefault and attributeFormDefault on the schema element, and + the form attributes on the element and attribute elements. + + + qualified + unqualified + + + + + + + This gives the values that can be taken in the lists used to control + derivation by extension or restriction (this is 'reduced' derivation + because some derivation can involve substitution). This RELAX NG schema, + like the XML Schema Recommendation here, allows the keywords 'extension' and + 'restriction' to be repeated any number of times. + + + + + extension + restriction + + + + + + + + This specifies the possible values for attributes that control derivation. + + + #all + + + + + + + This is the beginning point for the schema, and defines the schema + element. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + This gives the value type for the maxOccurs attribute, which may be a + non-negative number or the keyword 'unbounded'. + + + + unbounded + + + + + + This specifies the occurs attributes, minOccurs and maxOccurs, as they + are normally used. + + + + + + + + + + + + + + + + This gives the possible content of complex types. + + + + + + + + + + + + This gives the particles that can make up a model group. + + + + + + + + + + + + + This specifies the relationship between fixed and default attributes on + element and attribute elements - if one is present, then the other cannot + be. This is a constraint that cannot be specified using XML Schema. + + + + + + + + + + + This specifies the relationship between the type attribute and the + simpleType element child of attribute elements - if one is present, then + the other cannot be, although it is possible for neither to be allowed. + + + + + + + + + + + + + This describes attribute elements when used in a local context. They + have an optional use attribute, possibly a fixed or default attribute, + and then can either have a ref attribute (referring to a top-level + attribute) or a name attribute with an optional form attribute and + specifying an attribute type. + + + + + + + optional + prohibited + required + + + + + + + + + + + + + + + + + + + + + + + + + + This describes attribute elements when used at the top level of the + schema. They must have a name, may have a fixed or default attribute, + and specify their type through a type attribute or child simpleType + element. The name attribute of each attribute element that appears at + the top level of the schema is unique. + + + + + + + + + + + + + + This gives the model group for specifying the attributes in a complex + type, an extension or restriction. + + + + + + + + + + + + + + + This specifies the anyAttribute wildcard. + + + + + + + + + This specifies the content of a complexType element. As children, it can + have a simpleContent, a complexContent or a model group. Only if it has + one of the latter two, may it have a mixed attribute. This latter + constraint is something that cannot be specified in XML Schema. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + This specifies the basic content of a complexType element. + + + + + + + + + + + + + + + + + + + + + + + + + + + This describes a restriction element within a complexContent element + (i.e. one that restricts a complex type). It has a base attribute, may + contain a model group and may contain attribute declarations of various + sorts. + + + + + + + + + + + + + + + + This specifies the basic model for an extension element: adding a + required base attribute to the model used for most components. + + + + + + + + + + This describes an extension element within a complexContent element + (i.e. one that restricts a complex type). It may contain a model group + and may contain attribute declarations of various sorts. + + + + + + + + + + + + + This describes a complexContent element. It may have a mixed attribute, + and either a restriction or extension element as content. + + + + + + + + + + + + + + + + + + This describes a restriction element that appears within a simpleContent + or simpleType element (i.e. one that restricts a simple type). Its + content follows the simple restriction model that is detailed below, and + may include attribute declarations. + + + + + + + + + + + This describes an extension element that appears within a simpleContent + element (i.e. one that extends a simple type). Like other extensions, it + has a base type, but it can only be used to add attributes. + + + + + + + + + + This describes a simpleContent element, whose content can either hold a + restriction or extension element. + + + + + + + + + + + + + This gives the possible values for block attributes on element elements, + which includes substitution amongst the list of possible values. This + RELAX NG schema, like the XML Schema Recommendation, allows each of the + keywords 'extension', 'restriction' and 'substitution' to occur more than + once within the list. + + + #all + + + + extension + restriction + substitution + + + + + + + + + This describes the basic content model of an element element. It is + annotated, may have a fixed or default attribute, and may have nillable + and/or block attributes. Its type may be specified through a type + attribute, a local simple type or a local complex type - the choice + between these methods is something that cannot be indicated with XML + Schema. This content is optionally followed by some identify constraints. + + + + + + + + + + + + + + + + + + + + + + + + + + + This describes an element element that appears at the top level of the + schema. On top of the basic content for an element element, it has to + have a name, which is a unique identifier in the element symbol space. It + may have substitutionGroup, abstract and/or final attributes. + + + + + + + + + + + + + + + + + + + + + + + + + This describes an element element that appears locally, within a + complexType or group element. It may have minOccurs and/or maxOccurs + attributes. If it has a ref attribute, then that's all it can + have. Otherwise, it must have a name and specifies its type in the same + way as the basic element content model described above. It may in this + case also have a form element. These constraints on local elements + cannot be described within XML Schema. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + This gives the content of a model group (not a group element) in the + normal run of things. It has occurrence attributes and any number of + particles within it. + + + + + + + + + + + This gives the content of a model group (not a group element) within a + named group - it differs from the above in that it doesn't have any + occurrence attributes. + + + + + + + + + + This describes an all element that appears outside a named group (i.e. as + the content of a complexType element). It has the standard model for an + all element, but adds minOccurs and maxOccurs attributes which can only + take certain values. + + + + + + + + + This describes a choice element that appears outside a named group. + + + + + + + + + This describes a sequence element that appears outside a named group. + + + + + + + + + This describes a wildcard element (i.e. any or anyAttribute). The + namespace attribute can take a list URIs interspersed with the keywords + '##targetNamespace' and/or '##local'. This RELAX NG schema, like the XML + Schema Recommendation, allows the keywords to be specified more than once + each within the list, if they're given. This model also specifies the + processContents attribute. + + + + + + + ##any + ##other + + + + + ##targetNamespace + ##local + + + + + + + + lax + skip + strict + + + + + + + + + This describes an any element as a wildcard. + + + + + + + + + + + + + + + + + + This describes an import element that's used when its parent schema + element specifies a targetNamespace. In these cases, the namespace + attribute on the import element is optional. + + + + + + + + + + + + + + + + + + + + + + + This is designed to describe the content of the appinfo elements in the + schema. At the moment this allows any mixed content without validation. + Note that this is fairly complex compared to the XML Schema equivalent, + which would be a single any element. + + + + + + + + + + + + This describes an appinfo element. It has an optional source attribute + and can currently contain anything at all. + + + + + + + + + + + + + + This is designed to describe the content of the documentation elements in + the schema. At the moment this allows any mixed content without + validation. Note that this is fairly complex compared to the XML Schema + equivalent, which would be a single any element. + + + + + + + This describes a documentation element. It has optional source + and xml:lang attributes and can currently contain anything at all. + + + + + + + + + + + + + + + + + + + This describes an annotation element. It can have any attributes, may + have an id attribute, and contains any number of documentation or appinfo + elements. + + + + + + + + + + + + + + + + + + + + This gives the various types of derivation of simple types. + + + + + + + + + + + This specifies the values of the final attribute for simple types. This + RELAX NG schema for XML Schema, like the XML Schema Recommendation, allows + the keywords 'list', 'union' and 'restriction' to appear more than once + within the list. + + + #all + + + + list + union + restriction + + + + + + + + + + + + + + This gives the basic content of a simple type. + + + + + + + + + + + + + + + + + + + + + + This specifies the types of facets that are valid in restrictions on the + built-in data types. This can only perform rudimentary checking, but + should be enough in most circumstances. Note that for xs:anySimpleType + and xs:string, the whiteSpace facet can take any value, for + xs:normalizedString it can be 'replace' or 'collapse', and for all other + built-in types it has to be 'collapse'. + + + + + + + + + + + + + + + + + + + This describes a list element. It can either specify a local simple type + or have a itemType attribute. This constraint cannot be expressed in XML + Schema. + + + + + + + + + + + + + + + This describes a union element. If the memberTypes attribute is missing + or empty, then it must contain one or more simpleType elements; if + it's present, then it can contain simpleType elements or list simple + types in the memberTypes attribute. This constraint cannot be expressed + in XML Schema. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + This is the basic content of a facet. It has an optional fixed attribute. + + + + + + + + + + + + This is the content of a facet that cannot be fixed (enumeration or + pattern). 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a/workflow/apps/java/clustering/bin/javax/xml/bind/Marshaller$Listener.class b/workflow/apps/java/clustering/bin/javax/xml/bind/Marshaller$Listener.class new file mode 100644 index 00000000..58ac4b3f Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/Marshaller$Listener.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/Marshaller.class b/workflow/apps/java/clustering/bin/javax/xml/bind/Marshaller.class new file mode 100644 index 00000000..3ce7e038 Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/Marshaller.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/Messages.class b/workflow/apps/java/clustering/bin/javax/xml/bind/Messages.class new file mode 100644 index 00000000..6b42a2a1 Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/Messages.properties b/workflow/apps/java/clustering/bin/javax/xml/bind/Messages.properties new file mode 100644 index 00000000..4a2ff60a --- /dev/null +++ b/workflow/apps/java/clustering/bin/javax/xml/bind/Messages.properties @@ -0,0 +1,47 @@ +# +# Copyright (c) 2003, 2018 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ContextFinder.ProviderNotFound = \ + Provider {0} not found + +ContextFinder.DefaultProviderNotFound = \ + Implementation of JAXB-API has not been found on module path or classpath. + +ContextFinder.CouldNotInstantiate = \ + Provider {0} could not be instantiated: {1} + +ContextFinder.CantFindPropertiesFile = \ + Unable to locate jaxb.properties for package {0} + +ContextFinder.CantMixProviders = \ + You may not mix JAXB Providers on the context path + +ContextFinder.MissingProperty = \ + jaxb.properties in package {0} does not contain the {1} property. + +ContextFinder.NoPackageInContextPath = \ + No package name is given + +ContextFinder.ErrorLoadClass = \ + Error loading class {0} listed in {1}, make sure that entries are accessable \ + on CLASSPATH and of the form ClassName or OuterClass.InnerClass \ + not ClassName.class or fully.qualified.ClassName + +PropertyException.NameValue = \ + name: {0} value: {1} + +DatatypeConverter.ConverterMustNotBeNull = \ + The DatatypeConverterInterface parameter must not be null + +JAXBContext.IllegalCast = \ + ClassCastException: attempting to cast {0} to {1}. 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mode 100644 index 00000000..46db257a Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/Messages.properties b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/Messages.properties new file mode 100644 index 00000000..83b1821b --- /dev/null +++ b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/Messages.properties @@ -0,0 +1,46 @@ +# +# Copyright (c) 2003, 2018 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +AbstractUnmarshallerImpl.ISNotNull = \ + InputStream can not be null + +AbstractMarshallerImpl.MustBeBoolean = \ + {0} must be boolean + +AbstractMarshallerImpl.MustBeString = \ + {0} must be a String + + +DefaultValidationEventHandler.SeverityMessage = \ + DefaultValidationEventHandler: {0} {1} \n\ +\ \ \ \ \ Location: {2} + +DefaultValidationEventHandler.LocationUnavailable = \ + unavailable + +DefaultValidationEventHandler.UnrecognizedSeverity = \ + Unrecognized event severity field "{0}" + +DefaultValidationEventHandler.Warning = \ + [WARNING]: + +DefaultValidationEventHandler.Error = \ + [ERROR]: + +DefaultValidationEventHandler.FatalError = \ + [FATAL_ERROR]: + +ValidationEventImpl.IllegalSeverity = \ + Illegal severity + +Shared.MustNotBeNull = \ + {0} parameter must not be null + + diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/NotIdentifiableEventImpl.class b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/NotIdentifiableEventImpl.class new file mode 100644 index 00000000..a52df93c Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/NotIdentifiableEventImpl.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/ParseConversionEventImpl.class b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/ParseConversionEventImpl.class new file mode 100644 index 00000000..c38fb320 Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/ParseConversionEventImpl.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/PrintConversionEventImpl.class b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/PrintConversionEventImpl.class new file mode 100644 index 00000000..4b69bad6 Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/PrintConversionEventImpl.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/ValidationEventImpl.class b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/ValidationEventImpl.class new file mode 100644 index 00000000..0d253ced Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/ValidationEventImpl.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/ValidationEventLocatorImpl.class b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/ValidationEventLocatorImpl.class new file mode 100644 index 00000000..5b6fb9e0 Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/helpers/ValidationEventLocatorImpl.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/util/JAXBResult.class b/workflow/apps/java/clustering/bin/javax/xml/bind/util/JAXBResult.class new file mode 100644 index 00000000..16011a5f Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/util/JAXBResult.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/util/JAXBSource$1.class b/workflow/apps/java/clustering/bin/javax/xml/bind/util/JAXBSource$1.class new file mode 100644 index 00000000..27260f7a Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/util/JAXBSource$1.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/util/JAXBSource.class b/workflow/apps/java/clustering/bin/javax/xml/bind/util/JAXBSource.class new file mode 100644 index 00000000..819e91c7 Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/util/JAXBSource.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/util/Messages.class b/workflow/apps/java/clustering/bin/javax/xml/bind/util/Messages.class new file mode 100644 index 00000000..83bdc94b Binary files /dev/null and b/workflow/apps/java/clustering/bin/javax/xml/bind/util/Messages.class differ diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/util/Messages.properties b/workflow/apps/java/clustering/bin/javax/xml/bind/util/Messages.properties new file mode 100644 index 00000000..78cf4550 --- /dev/null +++ b/workflow/apps/java/clustering/bin/javax/xml/bind/util/Messages.properties @@ -0,0 +1,28 @@ +# +# Copyright (c) 2003, 2018 Oracle and/or its affiliates. All rights reserved. +# +# This program and the accompanying materials are made available under the +# terms of the Eclipse Distribution License v. 1.0, which is available at +# http://www.eclipse.org/org/documents/edl-v10.php. +# +# SPDX-License-Identifier: BSD-3-Clause +# + +ValidationEventCollector.UnrecognizedSeverity = \ + Unrecognized event severity field "{0}" + +JAXBResult.NullContext = \ + JAXBContext can not be null + +JAXBResult.NullUnmarshaller = \ + Unmarshaller can not be null + +JAXBSource.NullContext = \ + JAXBContext can not be null + +JAXBSource.NullContent = \ + Content object can not be null + +JAXBSource.NullMarshaller = \ + Marshaller can not be null + diff --git a/workflow/apps/java/clustering/bin/javax/xml/bind/util/ValidationEventCollector.class b/workflow/apps/java/clustering/bin/javax/xml/bind/util/ValidationEventCollector.class new file mode 100644 index 00000000..35ded725 Binary files /dev/null and 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a/workflow/apps/java/clustering/bin/weka/core/Capabilities$Capability.class b/workflow/apps/java/clustering/bin/weka/core/Capabilities$Capability.class new file mode 100644 index 00000000..610ae8c1 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/Capabilities$Capability.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/Capabilities.class b/workflow/apps/java/clustering/bin/weka/core/Capabilities.class new file mode 100644 index 00000000..509dda25 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/Capabilities.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/Capabilities.props b/workflow/apps/java/clustering/bin/weka/core/Capabilities.props new file mode 100644 index 00000000..db3c3a3e --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/core/Capabilities.props @@ -0,0 +1,42 @@ +# The processing of Capabilities is managed with the properties stored +# in this file. +# +# author: Fracpete (fracpete at waikato dot ac dot nz) +# version: $Revision: 14534 $ + +# are Capabilities tests enabled at all? +Test=true + +# enable tests that are based on the data +# see weka.core.Capabilities.test(Instances,int,int) +InstancesTest=true + +# enable tests that work only on the type of attribute, not the data +# see weka.core.Capabilities.test(Attribute,boolean) +AttributeTest=true + +# test for missing values +# see weka.core.Capabilities.test(Instances,int,int) +MissingValuesTest=true + +# test for missing class values +# see weka.core.Capabilities.test(Instances,int,int) +MissingClassValuesTest=true + +# test for minimum number of instances +# see weka.core.Capabilities.test(Instances,int,int) +MinimumNumberInstancesTest=true + +# Capabilities defined by interfaces +WeightedInstancesHandlerInterfaceCapability=weka.core.WeightedInstancesHandler +WeightedAttributesHandlerInterfaceCapability=weka.core.WeightedAttributesHandler +RandomizableInterfaceCapability=weka.core.Randomizable +DrawableInterfaceCapability=weka.core.Drawable +PartitionGeneratorInterfaceCapability=weka.core.PartitionGenerator +UpdateableClassifierInterfaceCapability=weka.classifiers.UpdateableClassifier +UpdateableClustererInterfaceCapability=weka.clusterers.UpdateableClusterer +SourcableFilterInterfaceCapability=weka.filters.Sourcable +SourcableClassifierInterfaceCapability=weka.classifiers.Sourcable +StreamableFilterInterfaceCapability=weka.filters.StreamableFilter +UnsupervisedFilterInterfaceCapability=weka.filters.UnsupervisedFilter +SupervisedFilterInterfaceCapability=weka.filters.SupervisedFilter \ No newline at end of file diff --git a/workflow/apps/java/clustering/bin/weka/core/CapabilitiesHandler.class b/workflow/apps/java/clustering/bin/weka/core/CapabilitiesHandler.class new file mode 100644 index 00000000..5e5f3624 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/CapabilitiesHandler.class differ diff --git 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a/workflow/apps/java/clustering/bin/weka/core/ContingencyTables.class b/workflow/apps/java/clustering/bin/weka/core/ContingencyTables.class new file mode 100644 index 00000000..a5f3e5d4 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/ContingencyTables.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/Copyable.class b/workflow/apps/java/clustering/bin/weka/core/Copyable.class new file mode 100644 index 00000000..38c0a964 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/Copyable.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/Copyright.class b/workflow/apps/java/clustering/bin/weka/core/Copyright.class new file mode 100644 index 00000000..73a75384 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/Copyright.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/Copyright.props b/workflow/apps/java/clustering/bin/weka/core/Copyright.props new file mode 100644 index 00000000..9e9e5aea --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/core/Copyright.props @@ -0,0 +1,11 @@ +# central copyright information +# +# Author: FracPete (fracpete at waikato dot ac dot nz) +# Version: $Revision: 15923 $ + +FromYear=1999 +ToYear=2022 +Owner=The University of Waikato +Address=Hamilton, New Zealand +URL=https://www.cs.waikato.ac.nz/~ml/weka/ + diff --git a/workflow/apps/java/clustering/bin/weka/core/CustomDisplayStringProvider.class b/workflow/apps/java/clustering/bin/weka/core/CustomDisplayStringProvider.class new file mode 100644 index 00000000..161c87ac Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/CustomDisplayStringProvider.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/DateAttributeInfo.class b/workflow/apps/java/clustering/bin/weka/core/DateAttributeInfo.class new file mode 100644 index 00000000..85423f5c Binary files /dev/null and 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See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program. If not, see . + */ + +/* + * Parser.cup + * Copyright (C) 2015 University of Waikato, Hamilton, New Zealand + */ + +/** + * The parser used for the expression language + * + * @author Benjamin Weber ( benweber at student dot ethz dot ch ) + * @version $Revision: 1000 $ + */ +package weka.core.expressionlanguage.parser; + +import java.util.List; +import java.util.ArrayList; +import java.io.StringReader; + +import java_cup.runtime.Symbol; + +import weka.core.expressionlanguage.core.Node; +import weka.core.expressionlanguage.core.VariableDeclarations; +import weka.core.expressionlanguage.core.SemanticException; +import weka.core.expressionlanguage.core.SyntaxException; +import weka.core.expressionlanguage.core.MacroDeclarations; +import weka.core.expressionlanguage.common.Operators; +import weka.core.expressionlanguage.common.NoVariables; +import weka.core.expressionlanguage.common.NoMacros; +import weka.core.expressionlanguage.common.Primitives.DoubleConstant; +import weka.core.expressionlanguage.common.Primitives.BooleanConstant; +import weka.core.expressionlanguage.common.Primitives.StringConstant; +import weka.core.expressionlanguage.parser.Scanner; + +parser code +{: + /** the variables available to the program */ + private VariableDeclarations variables = new NoVariables(); + + /** the macros available to the program */ + private MacroDeclarations macros = new NoMacros(); + + /** the root node */ + private Node root; + + /** + * Sets the variable declarations for the program + * + * @param variables the variables that should be exposed to the program + */ + public void setVariables(VariableDeclarations variables) { + this.variables = variables; + } + + /** + * Sets the macro declarations for the program + * + * @param macros the macros that should be exposed to the program + */ + public void setMacros(MacroDeclarations macros) { + this.macros = macros; + } + + /** + * Sets the root node + */ + private void setRoot(Node root) { + this.root = root; + } + + /** + * Returns the root node of the program + * + * @return the root node + */ + public Node getRoot() { + return root; + } + + /** + * Tries to parse and compile a program from the textual representation in + * expr while exposing the variables and marcos + * + * @param expr the expression to be compiled in textual form + * @param variables the variables exposed to the program + * @param macros the macros exposed to the program + * @return the root node of the compiled program + * @throws Exception if an error occurs during compilation + */ + public static Node parse(String expr, VariableDeclarations variables, + MacroDeclarations macros) throws Exception { + + Parser parser = new Parser(new Scanner(new StringReader(expr))); + parser.setVariables(variables); + parser.setMacros(macros); + parser.parse(); + return parser.getRoot(); + } + + public void unrecovered_syntax_error(Symbol token) throws SyntaxException { + throw new SyntaxException("Syntax error at token '" + + sym.terminalNames[token.sym] + "'!"); + } +:} + +terminal String IDENTIFIER; +terminal Double FLOAT; +terminal String STRING; +terminal Boolean BOOLEAN; +terminal LPAREN, RPAREN, COMMA; +terminal PLUS, MINUS, TIMES, DIVISION, POW; +terminal UMINUS, UPLUS; +terminal AND, OR, NOT; +terminal EQUAL, LT, LE, GT, GE; +terminal IS, REGEXP; + +nonterminal Node unit; +nonterminal Node expr; +nonterminal List paramlistOpt; +nonterminal List paramlist; + +// top lowest, bottom highest (same as java except for POW, IS & REGEXP) +precedence left OR; +precedence left AND; +// bitwise and, or, not +precedence nonassoc IS; // non-java +precedence nonassoc EQUAL; // not equal +precedence nonassoc LT, LE, GT, GE, REGEXP; // non-java +// shifts +precedence left PLUS, MINUS; // string concatenation +precedence left TIMES, DIVISION; // modulo +precedence nonassoc NOT, UMINUS, UPLUS; // bitwise not, unary minus, unary plus +precedence right POW; // non-java + +start with unit; + +unit ::= expr:e + {: + RESULT = e; + setRoot(RESULT); + :} + ; + + +paramlist ::= + paramlist:l COMMA expr:e + {: + l.add(e); + RESULT = l; + :} + + | expr:e + {: + List l = new ArrayList(); + l.add(e); + RESULT = l; + :} + + ; + +paramlistOpt ::= + paramlist:l + {: + RESULT = l; + :} + + | // nothing + {: + RESULT = new ArrayList(); + :} + + ; + +expr ::= + LPAREN expr:e RPAREN + {: + RESULT = e; + :} + + // macro + | IDENTIFIER:m LPAREN paramlistOpt:p RPAREN + {: + if (!macros.hasMacro(m)) + throw new SemanticException("Macro '" + m + "' is undefined!"); + RESULT = macros.getMacro(m).evaluate(p.toArray(new Node[0])); + :} + + // variable + | IDENTIFIER:v + {: + if (!variables.hasVariable(v)) + throw new SemanticException("Variable '" + v + "' is undefined!"); + RESULT = variables.getVariable(v); + :} + + // float + | FLOAT:f + {: + RESULT = new DoubleConstant(f); + :} + + // boolean + | BOOLEAN:b + {: + RESULT = new BooleanConstant(b); + :} + + // string + | STRING:s + {: + RESULT = new StringConstant(s); + :} + + // unary plus + | PLUS expr:e + {: + RESULT = Operators.uplus(e); + :} + %prec UPLUS + + // unary minus + | MINUS expr:e + {: + RESULT = Operators.uminus(e); + :} + %prec UMINUS + + // pow operator + | expr:l POW expr:r + {: + RESULT = Operators.pow(l, r); + :} + + // plus operator + | expr:l PLUS expr:r + {: + RESULT = Operators.plus(l, r); + :} + + // minus operator + | expr:l MINUS expr:r + {: + RESULT = Operators.minus(l, r); + :} + + // times operator + | expr:l TIMES expr:r + {: + RESULT = Operators.times(l, r); + :} + + // division operator + | expr:l DIVISION expr:r + {: + RESULT = Operators.division(l, r); + :} + + // and operator + | expr:l AND expr:r + {: + RESULT = Operators.and(l, r); + :} + + // or operator + | expr:l OR expr:r + {: + RESULT = Operators.or(l, r); + :} + + // not operator + | NOT expr:e + {: + RESULT = Operators.not(e); + :} + + // equal operator + | expr:l EQUAL expr:r + {: + RESULT = Operators.equal(l, r); + :} + + // less than operator + | expr:l LT expr:r + {: + RESULT = Operators.lessThan(l, r); + :} + + // less equal operator + | expr:l LE expr:r + {: + RESULT = Operators.lessEqual(l, r); + :} + + // greater than operator + | expr:l GT expr:r + {: + RESULT = Operators.greaterThan(l, r); + :} + + // greater equal operator + | expr:l GE expr:r + {: + RESULT = Operators.greaterEqual(l, r); + :} + + // is operator + | expr:l IS expr:r + {: + RESULT = Operators.is(l, r); + :} + + // regexp operator + | expr:l REGEXP expr:r + {: + RESULT = Operators.regexp(l, r); + :} + + ; \ No newline at end of file diff --git a/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/parser/Scanner.class b/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/parser/Scanner.class new file mode 100644 index 00000000..095f5f81 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/parser/Scanner.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/parser/Scanner.jflex b/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/parser/Scanner.jflex new file mode 100644 index 00000000..1fdad522 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/parser/Scanner.jflex @@ -0,0 +1,200 @@ +/* + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as published by + * the Free Software Foundation, either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program. If not, see . + */ + +/* + * Scanner.java + * Copyright (C) 2015 University of Waikato, Hamilton, New Zealand + */ + + package weka.core.expressionlanguage.parser; + + import java_cup.runtime.*; + + import weka.core.expressionlanguage.core.SyntaxException; + +/** + * A lexical scanner for an expression language. + * + * It emerged as a superset of the weka.core.mathematicalexpression package, + * the weka.filers.unsupervised.instance.subsetbyexpression package and the + * weka.core.AttributeExpression class. + * + * Warning: This file (Scanner.java) has been auto generated by jflex. + * + * @author Benjamin Weber ( benweber at student dot ethz dot ch ) + * @version $Revision: 1000 $ + */ +%% + +// options & declarations + +%cup + +%public + +%class Scanner + +%{ + private StringBuilder string = new StringBuilder(); + + private Symbol symbol(int type) { + return new Symbol(type); + } + + private Symbol symbol(int type, Object obj) { + return new Symbol(type, obj); + } +%} + +%scanerror SyntaxException + +%state STRING1 +%state STRING2 + +%% + +// lexical rules + + { + + // float + [0-9]+\.?[0-9]* + { return symbol(sym.FLOAT, Double.valueOf(yytext())); } + + // boolean + "true" + { return symbol(sym.BOOLEAN, true); } + "false" + { return symbol(sym.BOOLEAN, false); } + + // string + \" + { yybegin(STRING1); string.setLength(0); } + \' + { yybegin(STRING2); string.setLength(0); } + + // parenthesis + "(" + { return symbol(sym.LPAREN); } + ")" + { return symbol(sym.RPAREN); } + + // comma + "," + { return symbol(sym.COMMA); } + + // numeric operators + "+" + { return symbol(sym.PLUS); } + "-" + { return symbol(sym.MINUS); } + "*" + { return symbol(sym.TIMES); } + "/" + { return symbol(sym.DIVISION); } + "^" + { return symbol(sym.POW); } + + // boolean operators + "&"|"and" + { return symbol(sym.AND); } + + "|"|"or" + { return symbol(sym.OR); } + + "!"|"not" + { return symbol(sym.NOT); } + + // comparison operators + "=" + { return symbol(sym.EQUAL); } + + "<" + { return symbol(sym.LT); } + + "<=" + { return symbol(sym.LE); } + + ">" + { return symbol(sym.GT); } + + ">=" + { return symbol(sym.GE); } + + "is" + { return symbol(sym.IS); } + + "regexp" + { return symbol(sym.REGEXP); } + + // identifier + [a-zA-Z_][a-zA-Z0-9_]* + { return symbol(sym.IDENTIFIER, yytext()); } + + // whitespace + \s + { /* ignore */ } + +} + + { + \" + { yybegin(YYINITIAL); return symbol(sym.STRING, string.toString()); } +} + + { + \' + { yybegin(YYINITIAL); return symbol(sym.STRING, string.toString()); } +} + +// escape sequences that are shared by both types of strings + { + + \\b + { string.append('\b'); } + + \\f + { string.append('\f'); } + + \\n + { string.append('\n'); } + + \\r + { string.append('\r'); } + + \\t + { string.append('\t'); } + + \\\" + { string.append('\"'); } + + \\\' + { string.append('\''); } + + \\\\ + { string.append('\\'); } + + \\. + { throw new SyntaxException("Invalid escape sequence '" + yytext() + "'!"); } + . + { string.append(yytext()); } + +} + +// syntax error +[^] + { + throw new SyntaxException("Illegal character " + yytext() + "!"); + } \ No newline at end of file diff --git a/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/parser/sym.class b/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/parser/sym.class new file mode 100644 index 00000000..4908836d Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/parser/sym.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/weka/InstancesHelper$DoubleValue.class b/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/weka/InstancesHelper$DoubleValue.class new file mode 100644 index 00000000..49fa81a7 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/weka/InstancesHelper$DoubleValue.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/expressionlanguage/weka/InstancesHelper$StringValue.class 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/dev/null and b/workflow/apps/java/clustering/bin/weka/core/json/Parser$CUP$Parser$actions.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/json/Parser.class b/workflow/apps/java/clustering/bin/weka/core/json/Parser.class new file mode 100644 index 00000000..3f413a38 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/json/Parser.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/json/Parser.cup b/workflow/apps/java/clustering/bin/weka/core/json/Parser.cup new file mode 100644 index 00000000..b4d64b7e --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/core/json/Parser.cup @@ -0,0 +1,280 @@ +/* + * STANDARD ML OF NEW JERSEY COPYRIGHT NOTICE, LICENSE AND DISCLAIMER. + * + * Copyright (c) 1989-1998 by Lucent Technologies + * + * Permission to use, copy, modify, and distribute this software and its + * documentation for any purpose and without fee is hereby granted, provided + * that the above copyright notice appear in all copies and that both the + * copyright notice and this permission notice and warranty disclaimer appear + * in supporting documentation, and that the name of Lucent Technologies, Bell + * Labs or any Lucent entity not be used in advertising or publicity pertaining + * to distribution of the software without specific, written prior permission. + * + * Lucent disclaims all warranties with regard to this software, including all + * implied warranties of merchantability and fitness. In no event shall Lucent + * be liable for any special, indirect or consequential damages or any damages + * whatsoever resulting from loss of use, data or profits, whether in an action + * of contract, negligence or other tortious action, arising out of or in + * connection with the use or performance of this software. + * + * Taken from this URL: + * http://www.smlnj.org/license.html + * + * This license is compatible with the GNU GPL (see section "Standard ML of New + * Jersey Copyright License"): + * http://www.gnu.org/licenses/license-list.html#StandardMLofNJ + */ + +/* + * Copyright 1996-1999 by Scott Hudson, Frank Flannery, C. Scott Ananian + */ + +package weka.core.json; + +import java_cup.runtime.*; + +import java.io.*; +import java.util.*; + +/** + * A parser for parsing JSON files. + * + * @author FracPete (fracpete at waikato dot ac dot nz) + * @version $Revision: 5785 $ + */ + +parser code {: + /** variable - value relation. */ + protected HashMap m_Symbols; + + /** for storing the parsed JSON data structure. */ + protected JSONNode m_Result; + + /** the stack for keeping track of the current parent node. */ + protected Stack m_Stack; + + /** + * Returns the JSON data structure. + * + * @return the result + */ + public JSONNode getResult() { + return m_Result; + } + + /** + * Returns the stack used internally for keeping track of the current + * parent node. + * + * @return the stack + */ + protected Stack getStack() { + return m_Stack; + } + + /** + * Runs the parser from commandline. Expects a filename as first parameter, + * pointing to a JSON file. + * + * @param args the commandline arguments + * @throws Exception if something goes wrong + */ + public static void main(String args[]) throws Exception { + if (args.length != 1) { + System.err.println("No JSON file specified!"); + System.exit(1); + } + + FileInputStream stream = new FileInputStream(args[0]); + SymbolFactory sf = new DefaultSymbolFactory(); + Parser parser = new Parser(new Scanner(stream, sf), sf); + parser.parse(); + StringBuffer buffer = new StringBuffer(); + parser.getResult().toString(buffer); + System.out.println(buffer.toString()); + } +:} + +init with {: + m_Symbols = new HashMap(); + m_Result = new JSONNode(); + m_Stack = new Stack(); + m_Stack.push(m_Result); +:} + +terminal COMMA; +terminal LSQUARE; +terminal RSQUARE; +terminal LCURLY; +terminal RCURLY; +terminal COLON; +terminal NULL; +terminal Boolean BOOLEAN; +terminal Integer INTEGER; +terminal Double DOUBLE; +terminal String STRING; + +non terminal json; +non terminal pairs; +non terminal pair; +non terminal primitive; +non terminal null; +non terminal Boolean boolean; +non terminal Integer integer; +non terminal Double double; +non terminal String string; +non terminal anon_object; +non terminal named_object; +non terminal named_object_start; +non terminal anon_object_start; +non terminal object_content; +non terminal object_end; +non terminal anon_array; +non terminal named_array; +non terminal named_array_start; +non terminal anon_array_start; +non terminal array_content; +non terminal array_end; +non terminal elements; +non terminal element; + +json ::= LCURLY RCURLY + | LCURLY pairs RCURLY + ; + +pairs ::= pairs COMMA pair + | pair + ; + +pair ::= primitive + | named_object + | named_array + ; + +primitive ::= null + | boolean + | integer + | double + | string + ; + +null ::= STRING:name COLON NULL + {: + parser.getStack().peek().addNull(name); + :} + ; + +boolean ::= STRING:name COLON BOOLEAN:b + {: + parser.getStack().peek().addPrimitive(name, b); + :} + ; + +integer ::= STRING:name COLON INTEGER:i + {: + parser.getStack().peek().addPrimitive(name, i); + :} + ; + +double ::= STRING:name COLON DOUBLE:d + {: + parser.getStack().peek().addPrimitive(name, d); + :} + ; + +string ::= STRING:name COLON STRING:s + {: + parser.getStack().peek().addPrimitive(name, s); + :} + ; + +named_object ::= named_object_start object_end + | named_object_start object_content object_end + ; + +named_object_start ::= STRING:name COLON LCURLY + {: + JSONNode node = parser.getStack().peek().addObject(name); + parser.getStack().push(node); + :} + ; + +anon_object ::= anon_object_start object_end + | anon_object_start object_content object_end + ; + +anon_object_start ::= LCURLY + {: + JSONNode node = parser.getStack().peek().addObject(null); + parser.getStack().push(node); + :} + ; + +object_content ::= pairs + ; + +object_end ::= RCURLY + {: + parser.getStack().pop(); + :} + ; + +named_array ::= named_array_start array_end + | named_array_start array_content array_end + ; + +named_array_start ::= STRING:name COLON LSQUARE + {: + JSONNode node = parser.getStack().peek().addArray(name); + parser.getStack().push(node); + :} + ; + +anon_array ::= anon_array_start array_end + | anon_array_start array_content array_end + ; + +anon_array_start ::= LSQUARE + {: + JSONNode node = parser.getStack().peek().addArray(null); + parser.getStack().push(node); + :} + ; + +array_content ::= elements + ; + +array_end ::= RSQUARE + {: + parser.getStack().pop(); + :} + ; + +elements ::= elements COMMA element + | element + ; + +element ::= NULL + {: + parser.getStack().peek().addArrayElement(null); + :} + | BOOLEAN:b + {: + parser.getStack().peek().addArrayElement(b); + :} + | INTEGER:i + {: + parser.getStack().peek().addArrayElement(i); + :} + | DOUBLE:d + {: + parser.getStack().peek().addArrayElement(d); + :} + | STRING:s + {: + parser.getStack().peek().addArrayElement(s); + :} + | anon_object + | anon_array + ; diff --git a/workflow/apps/java/clustering/bin/weka/core/json/Scanner.class b/workflow/apps/java/clustering/bin/weka/core/json/Scanner.class new file mode 100644 index 00000000..3670cd44 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/json/Scanner.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/json/Scanner.jflex b/workflow/apps/java/clustering/bin/weka/core/json/Scanner.jflex new file mode 100644 index 00000000..de1adec9 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/core/json/Scanner.jflex @@ -0,0 +1,92 @@ +/* + * This program is free software: you can redistribute it and/or modify + * it under the terms of the GNU General Public License as published by + * the Free Software Foundation, either version 3 of the License, or + * (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program. If not, see . + */ + +/* + * Scanner.java + * Copyright (C) 2009-2012 University of Waikato, Hamilton, New Zealand + */ + +package weka.core.json; + +import java_cup.runtime.SymbolFactory; +import java.io.*; + +/** + * A scanner for JSON data files. + * + * @author FracPete (fracpete at waikato dot ac dot nz) + * @version $Revision: 11496 $ + */ +%% +%cup +%public +%unicode +%class Scanner +%{ + // Author: FracPete (fracpete at waikato dot ac dot nz) + // Version: $Revision: 11496 $ + protected SymbolFactory m_SF; + + protected StringBuffer m_String = new StringBuffer(); + + public Scanner(InputStream r, SymbolFactory sf) { + this(new InputStreamReader(r)); + m_SF = sf; + } + + public Scanner(Reader r, SymbolFactory sf) { + this(r); + m_SF = sf; + } +%} +%eofval{ + return m_SF.newSymbol("EOF", sym.EOF); +%eofval} + +%state STRING + +%% + "{" { return m_SF.newSymbol("Left curly bracket", sym.LCURLY); } + "}" { return m_SF.newSymbol("Right curly bracket", sym.RCURLY); } + + { + "[" { return m_SF.newSymbol("Left square bracket", sym.LSQUARE); } + "]" { return m_SF.newSymbol("Right square bracket", sym.RSQUARE); } + "," { return m_SF.newSymbol("Comma", sym.COMMA); } + ":" { return m_SF.newSymbol("Colon", sym.COLON); } + "null" { return m_SF.newSymbol("Null", sym.NULL); } + "true" { return m_SF.newSymbol("Boolean", sym.BOOLEAN, new Boolean(yytext())); } + "false" { return m_SF.newSymbol("Boolean", sym.BOOLEAN, new Boolean(yytext())); } + [0-9][0-9]* { return m_SF.newSymbol("Integer", sym.INTEGER, new Integer(yytext())); } + [0-9][0-9]*\.?[0-9]* { return m_SF.newSymbol("Double", sym.DOUBLE, new Double(yytext())); } + -[0-9][0-9]*\.?[0-9]* { return m_SF.newSymbol("Double", sym.DOUBLE, new Double(yytext())); } + \" { m_String.setLength(0); yybegin(STRING); } + [ \r\n\t\f] { /* ignore white space. */ } +} + + { + \" { yybegin(YYINITIAL); return m_SF.newSymbol("String", sym.STRING, m_String.toString()); } + [^\n\r\"\\]+ { m_String.append(yytext()); } + \\\" { m_String.append('\"'); } + \\b { m_String.append('\b'); } + \\f { m_String.append('\f'); } + \\n { m_String.append('\n'); } + \\r { m_String.append('\r'); } + \\t { m_String.append('\t'); } + \\ { m_String.append('\\'); } +} + +// catch all +. { System.err.println("Illegal character: " + yytext()); } diff --git a/workflow/apps/java/clustering/bin/weka/core/json/sym.class b/workflow/apps/java/clustering/bin/weka/core/json/sym.class new file mode 100644 index 00000000..1205494c Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/json/sym.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/logging/ConsoleLogger.class b/workflow/apps/java/clustering/bin/weka/core/logging/ConsoleLogger.class new file mode 100644 index 00000000..6abd4a8d Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/logging/ConsoleLogger.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/logging/FileLogger.class b/workflow/apps/java/clustering/bin/weka/core/logging/FileLogger.class new file mode 100644 index 00000000..e30d26c8 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/logging/FileLogger.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/logging/Logger$Level.class b/workflow/apps/java/clustering/bin/weka/core/logging/Logger$Level.class new file mode 100644 index 00000000..84887d07 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/logging/Logger$Level.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/logging/Logger.class b/workflow/apps/java/clustering/bin/weka/core/logging/Logger.class new file mode 100644 index 00000000..dd6e8a23 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/logging/Logger.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/logging/Logging.props b/workflow/apps/java/clustering/bin/weka/core/logging/Logging.props new file mode 100644 index 00000000..1b3a05a6 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/core/logging/Logging.props @@ -0,0 +1,33 @@ +# Defines the logging used in Weka +# +# Author: FracPete (fracpete at waikato dot ac dot nz) +# Version: $Revision: 11644 $ + +# the logging class to use +weka.core.logging.Logger=weka.core.logging.OutputLogger +#weka.core.logging.Logger=weka.core.logging.ConsoleLogger +#weka.core.logging.Logger=weka.core.logging.FileLogger + +# the logging level that log message must have at least in order to appear in +# the log. Possible values: +# ALL +# FINEST +# FINER +# FINE +# INFO +# WARNING +# SEVERE +# OFF +weka.core.logging.MinLevel=INFO + +# the date format +weka.core.logging.DateFormat=yyyy-MM-dd HH:mm:ss + +# the output file for the weka.core.logging.FileLogger +# the following placeholders are recognized +# %t - the temp directory +# %h - the user's home directory +# %c - the current directory +# %w - WEKA_HOME +# %% - gets replaced by a single percentage sign +weka.core.logging.LogFile=%w/weka.log diff --git a/workflow/apps/java/clustering/bin/weka/core/logging/OutputLogger$OutputPrintStream.class b/workflow/apps/java/clustering/bin/weka/core/logging/OutputLogger$OutputPrintStream.class new file mode 100644 index 00000000..c9c10c7a Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/core/logging/OutputLogger$OutputPrintStream.class differ diff --git a/workflow/apps/java/clustering/bin/weka/core/logging/OutputLogger.class 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a/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.class b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.class new file mode 100644 index 00000000..b4c7d40f Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.class differ diff --git a/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props new file mode 100644 index 00000000..7337a15d --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props @@ -0,0 +1,110 @@ +# General information on database access can be found here: +# https://waikato.github.io/weka-wiki/databases/ +# +# Version: $Revision: 15255 $ + +# The comma-separated list of jdbc drivers to use +#jdbcDriver=RmiJdbc.RJDriver,jdbc.idbDriver +#jdbcDriver=jdbc.idbDriver +#jdbcDriver=RmiJdbc.RJDriver,jdbc.idbDriver,org.gjt.mm.mysql.Driver,com.mckoi.JDBCDriver,org.hsqldb.jdbcDriver +#jdbcDriver=org.gjt.mm.mysql.Driver + +# The url to the experiment database +#jdbcURL=jdbc:rmi://expserver/jdbc:idb=experiments.prp +jdbcURL=jdbc:idb=experiments.prp +#jdbcURL=jdbc:mysql://mysqlserver/username + +# the method that is used to retrieve values from the db +# (java datatype + RecordSet.) +# string, getString() = 0; --> nominal +# boolean, getBoolean() = 1; --> nominal +# double, getDouble() = 2; --> numeric +# byte, getByte() = 3; --> numeric +# short, getByte()= 4; --> numeric +# int, getInteger() = 5; --> numeric +# long, getLong() = 6; --> numeric +# float, getFloat() = 7; --> numeric +# date, getDate() = 8; --> date +# text, getString() = 9; --> string +# time, getTime() = 10; --> date +# timestamp, getTime() = 11; --> date +# the original conversion: = +#char=0 +#varchar=0 +#longvarchar=0 +#binary=0 +#varbinary=0 +#longvarbinary=0 +#bit=1 +#numeric=2 +#decimal=2 +#tinyint=3 +#smallint=4 +#integer=5 +#bigint=6 +#real=7 +#float=2 +#double=2 +#date=8 +#time=10 +#timestamp=11 +#mysql-conversion +CHAR=0 +TEXT=0 +VARCHAR=0 +LONGVARCHAR=9 +BINARY=0 +VARBINARY=0 +LONGVARBINARY=9 +BIT=1 +NUMERIC=2 +DECIMAL=2 +FLOAT=2 +DOUBLE=2 +TINYINT=3 +SMALLINT=4 +#SHORT=4 +SHORT=5 +INTEGER=5 +BIGINT=6 +LONG=6 +REAL=7 +DATE=8 +TIME=10 +TIMESTAMP=11 + +#mappings for table creation +CREATE_STRING=TEXT +CREATE_INT=INT +CREATE_DOUBLE=DOUBLE +CREATE_DATE=DATETIME +DateFormat=yyyy-MM-dd HH:mm:ss + +#database flags +checkUpperCaseNames=false +checkLowerCaseNames=false +checkForTable=true +setAutoCommit=true +createIndex=false + +# All the reserved keywords for this database +Keywords=\ + AND,\ + ASC,\ + BY,\ + DESC,\ + FROM,\ + GROUP,\ + INSERT,\ + ORDER,\ + SELECT,\ + UPDATE,\ + WHERE + +# The character to append to attribute names to avoid exceptions due to +# clashes between keywords and attribute names +KeywordsMaskChar=_ + +#flags for loading and saving instances using DatabaseLoader/Saver +nominalToStringLimit=50 +idColumn=auto_generated_id diff --git a/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.hsql b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.hsql new file mode 100644 index 00000000..b5346655 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.hsql @@ -0,0 +1,197 @@ +# Database settings for HSQLDB 1.8.x +# +# General information on database access can be found here: +# https://waikato.github.io/weka-wiki/databases/ +# +# url: http://hsqldb.sourceforge.net/ +# jdbc: http://sourceforge.net/projects/hsqldb/ +# howto: http://hsqldb.sourceforge.net/doc/guide/ch01.html +# author: Dale Fletcher (dale at cs dot waikato dot ac dot nz) +# version: $Revision: 15255 $ + +# JDBC driver (comma-separated list) +jdbcDriver=org.hsqldb.jdbcDriver + +# database URL +jdbcURL=jdbc:hsqldb:hsql://server_name/database_name + +# specific data types +# string, getString() = 0; --> nominal +# boolean, getBoolean() = 1; --> nominal +# double, getDouble() = 2; --> numeric +# byte, getByte() = 3; --> numeric +# short, getByte()= 4; --> numeric +# int, getInteger() = 5; --> numeric +# long, getLong() = 6; --> numeric +# float, getFloat() = 7; --> numeric +# date, getDate() = 8; --> date +# text, getString() = 9; --> string +# time, getTime() = 10; --> date +# timestamp, getTime() = 11; --> date + +# other options +CREATE_INT=INT +CREATE_DOUBLE=DOUBLE +CREATE_STRING=LONGVARCHAR +CREATE_DATE=DATETIME +DateFormat=yyyy-MM-dd HH:mm:ss +checkUpperCaseNames=true +checkLowerCaseNames=false +checkForTable=true + +# All the reserved keywords for this database +# Based on the keywords listed at the following URL (2009-04-13): +# http://hsqldb.org/doc/guide/ch09.html +Keywords=\ + ABS,\ + ACOS,\ + ALIAS,\ + ALL,\ + ALTER,\ + ASCII,\ + ASIN,\ + ATAN,\ + ATAN2,\ + AUTOCOMMIT,\ + BITAND,\ + BIT_LENGTH,\ + BITOR,\ + CACHED,\ + CALL,\ + CASEWHEN,\ + CEILING,\ + CHAR,\ + CHAR_LENGTH,\ + CHECKPOINT,\ + COALESCE,\ + COLLATION,\ + COMMIT,\ + CONCAT,\ + CONNECT,\ + CONVERT,\ + COS,\ + COT,\ + CREATE,\ + CURDATE,\ + CURRENT_DATE,\ + CURRENT_TIME,\ + CURRENT_TIMESTAMP,\ + CURRENT_USER,\ + CURTIME,\ + DATABASE,\ + DAYNAME,\ + DAYOFMONTH,\ + DAYOFWEEK,\ + DAYOFYEAR,\ + DEFRAG,\ + DEGREES,\ + DELAY,\ + DELETE,\ + DIFFERENCE,\ + DISCONNECT,\ + DISTINCT,\ + DROP,\ + EXCEPT,\ + EXP,\ + EXPLAIN,\ + EXTRACT,\ + FLOOR,\ + FROM,\ + GRANT,\ + GROUPBY,\ + HAVING,\ + HEXTORAW,\ + HOUR,\ + IDENTITY,\ + IFNULL,\ + IGNORECASE,\ + INDEX,\ + INITIAL,\ + INSERT,\ + INTEGRITY,\ + INTERSECT,\ + INTO,\ + LCASE,\ + LEFT,\ + LENGTH,\ + LIMIT,\ + LOCATE,\ + LOG,\ + LOG10,\ + LOGSIZE,\ + LOWER,\ + LTRIM,\ + MAXROWS,\ + MINUS,\ + MINUTE,\ + MOD,\ + MONTH,\ + MONTHNAME,\ + NOW,\ + NULLIF,\ + OCTET_LENGTH,\ + OFFSET,\ + ORDERBY,\ + PASSWORD,\ + PI,\ + PLAN,\ + POWER,\ + PROPERTY,\ + QUARTER,\ + RADIANS,\ + RAND,\ + RAWTOHEX,\ + READONLY,\ + REFERENTIAL,\ + REPEAT,\ + REPLACE,\ + REVOKE,\ + RIGHT,\ + ROLE,\ + ROLLBACK,\ + ROUND,\ + ROUNDMAGIC,\ + RTRIM,\ + SAVEPOINT,\ + SCHEMA,\ + SCRIPT,\ + SCRIPTFORMAT,\ + SECOND,\ + SELECT,\ + SEQUENCE,\ + SET,\ + SHUTDOWN,\ + SIGN,\ + SIN,\ + SOUNDEX,\ + SOURCE,\ + SPACE,\ + SQRT,\ + SUBSTR,\ + SUBSTRING,\ + TABLE,\ + TAN,\ + TEMP,\ + TEXT,\ + TOP,\ + TRIGGER,\ + TRUNCATE,\ + UCASE,\ + UNION,\ + UPDATE,\ + UPPER,\ + USER,\ + VIEW,\ + WEEK,\ + WHERE,\ + WRITE,\ + YEAR + +# The character to append to attribute names to avoid exceptions due to +# clashes between keywords and attribute names +KeywordsMaskChar=_ + +# flags for loading and saving instances using DatabaseLoader/Saver +nominalToStringLimit=50 +idColumn=auto_generated_id + diff --git a/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.msaccess b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.msaccess new file mode 100644 index 00000000..c0fcc489 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.msaccess @@ -0,0 +1,265 @@ +# Database settings for ODBC in conjunction with MS Access 2000 +# +# General information on database access can be found here: +# https://waikato.github.io/weka-wiki/databases/ +# +# url: https://waikato.github.io/weka-wiki/windows_databases/ +# author: Fracpete (fracpete at waikato dot ac dot nz) +# version: $Revision: 15255 $ + +# JDBC driver (comma-separated list) +jdbcDriver=sun.jdbc.odbc.JdbcOdbcDriver + +# database URL +jdbcURL=jdbc:odbc:DSN_Name + +# specific data types +# string, getString() = 0; --> nominal +# boolean, getBoolean() = 1; --> nominal +# double, getDouble() = 2; --> numeric +# byte, getByte() = 3; --> numeric +# short, getByte()= 4; --> numeric +# int, getInteger() = 5; --> numeric +# long, getLong() = 6; --> numeric +# float, getFloat() = 7; --> numeric +# date, getDate() = 8; --> date +# text, getString() = 9; --> string +# time, getTime() = 10; --> date +# timestamp, getTime() = 11; --> date + +varchar=0 +float=2 +tinyint=3 +int=5 +text=0 + +# other options +CREATE_DOUBLE=DOUBLE +CREATE_STRING=TEXT +CREATE_INT=INT +CREATE_DATE=DATETIME +DateFormat=yyyy-MM-dd HH:mm:ss +checkUpperCaseNames=false +checkLowerCaseNames=false +checkForTable=true + +# All the reserved keywords for this database +# Based on the keywords listed at the following URL (2009-04-13): +# http://support.microsoft.com/default.aspx?scid=kb;en-us;286335 +Keywords=\ + ADD,\ + ALL,\ + ALTER,\ + AND,\ + ANY,\ + AS,\ + ASC,\ + AUTOINCREMENT,\ + Alphanumeric,\ + Application,\ + Assistant,\ + Avg,\ + BETWEEN,\ + BINARY,\ + BIT,\ + BOOLEAN,\ + BY,\ + BYTE,\ + CHAR,\ + CHARACTER,\ + COLUMN,\ + CONSTRAINT,\ + COUNTER,\ + CREATE,\ + CURRENCY,\ + CompactDatabase,\ + Container,\ + Count,\ + CreateDatabase,\ + CreateField,\ + CreateGroup,\ + CreateIndex,\ + CreateObject,\ + CreateProperty,\ + CreateRelation,\ + CreateTableDef,\ + CreateUser,\ + CreateWorkspace,\ + CurrentUser,\ + DATABASE,\ + DATE,\ + DATETIME,\ + DELETE,\ + DESC,\ + DISALLOW,\ + DISTINCT,\ + DISTINCTROW,\ + DOUBLE,\ + DROP,\ + Description,\ + Document,\ + EXISTS,\ + Echo,\ + Else,\ + End,\ + Eqv,\ + Error,\ + Exit,\ + FALSE,\ + FLOAT,\ + FLOAT4,\ + FLOAT8,\ + FOREIGN,\ + FROM,\ + FUNCTION,\ + Field,\ + Fields,\ + FillCache,\ + Form,\ + Forms,\ + Full,\ + GENERAL,\ + GROUP,\ + GROUPBY,\ + GUID,\ + GetObject,\ + GetOption,\ + GotoPage,\ + HAVING,\ + IEEEDOUBLE,\ + IEEESINGLE,\ + IGNORE,\ + IN,\ + INDEX,\ + INNER,\ + INSERT,\ + INT,\ + INTEGER,\ + INTEGER1,\ + INTEGER2,\ + INTEGER4,\ + INTO,\ + IS,\ + Idle,\ + If,\ + Imp,\ + Index,\ + Indexes,\ + InsertText,\ + JOIN,\ + KEY,\ + LEFT,\ + LOGICAL,\ + LOGICAL1,\ + LONG,\ + LONGBINARY,\ + LONGTEXT,\ + LastModified,\ + Level,\ + Like,\ + MEMO,\ + MONEY,\ + Macro,\ + Match,\ + Max,\ + Min,\ + Mod,\ + Module,\ + Move,\ + NAME,\ + NO,\ + NULL,\ + NUMBER,\ + NUMERIC,\ + NewPassword,\ + Not,\ + Note,\ + OFF,\ + OLEOBJECT,\ + ON,\ + OPTION,\ + OR,\ + ORDER,\ + OWNERACCESS,\ + Object,\ + OpenRecordset,\ + Orientation,\ + Outer,\ + PARAMETERS,\ + PERCENT,\ + PIVOT,\ + PRIMARY,\ + PROCEDURE,\ + Parameter,\ + Partial,\ + Property,\ + Queries,\ + Query,\ + Quit,\ + REAL,\ + REFERENCES,\ + RIGHT,\ + Recalc,\ + Recordset,\ + Refresh,\ + RefreshLink,\ + RegisterDatabase,\ + Relation,\ + Repaint,\ + RepairDatabase,\ + Report,\ + Reports,\ + Requery,\ + SCREEN,\ + SECTION,\ + SELECT,\ + SET,\ + SHORT,\ + SINGLE,\ + SMALLINT,\ + SOME,\ + SQL,\ + STRING,\ + SetFocus,\ + SetOption,\ + StDev,\ + StDevP,\ + Sum,\ + TABLE,\ + TEXT,\ + TIME,\ + TIMESTAMP,\ + TOP,\ + TRANSFORM,\ + TRUE,\ + TableDef,\ + TableDefs,\ + TableID,\ + Type,\ + UNION,\ + UNIQUE,\ + UPDATE,\ + USER,\ + VALUE,\ + VALUES,\ + VARBINARY,\ + VARCHAR,\ + VERSION,\ + Var,\ + VarP,\ + WHERE,\ + WITH,\ + Workspace,\ + Xor,\ + YES,\ + YESNO,\ + Year + +# The character to append to attribute names to avoid exceptions due to +# clashes between keywords and attribute names +KeywordsMaskChar=_ + +#flags for loading and saving instances using DatabaseLoader/Saver +nominalToStringLimit=50 +idColumn=auto_generated_id + diff --git a/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.mssqlserver b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.mssqlserver new file mode 100644 index 00000000..249c76ab --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.mssqlserver @@ -0,0 +1,232 @@ +# Database settings for Microsoft SQL Server 2000 +# +# General information on database access can be found here: +# https://waikato.github.io/weka-wiki/databases/ +# +# url: http://www.microsoft.com/ +# jdbc: http://www.microsoft.com/downloads/details.aspx?familyid=07287B11-0502-461A-B138-2AA54BFDC03A +# author: Fracpete (fracpete at waikato dot ac dot nz) +# version: $Revision: 15255 $ + +# JDBC driver (comma-separated list) +jdbcDriver=com.microsoft.jdbc.sqlserver.SQLServerDriver + +# database URL +jdbcURL=jdbc:sqlserver://server_name:1433 + +# specific data types +# string, getString() = 0; --> nominal +# boolean, getBoolean() = 1; --> nominal +# double, getDouble() = 2; --> numeric +# byte, getByte() = 3; --> numeric +# short, getByte()= 4; --> numeric +# int, getInteger() = 5; --> numeric +# long, getLong() = 6; --> numeric +# float, getFloat() = 7; --> numeric +# date, getDate() = 8; --> date +# text, getString() = 9; --> string +# time, getTime() = 10; --> date +# timestamp, getTime() = 11; --> date + +varchar=0 +float=2 +tinyint=3 +int=5 + +# other options +CREATE_DOUBLE=DOUBLE PRECISION +CREATE_STRING=VARCHAR(8000) +CREATE_INT=INT +CREATE_DATE=DATETIME +DateFormat=yyyy-MM-dd HH:mm:ss +checkUpperCaseNames=false +checkLowerCaseNames=false +checkForTable=true + +# All the reserved keywords for this database +# Based on the keywords listed at the following URL (2009-04-13): +# http://msdn.microsoft.com/en-us/library/aa238507.aspx +Keywords=\ + ADD,\ + ALL,\ + ALTER,\ + AND,\ + ANY,\ + AS,\ + ASC,\ + AUTHORIZATION,\ + BACKUP,\ + BEGIN,\ + BETWEEN,\ + BREAK,\ + BROWSE,\ + BULK,\ + BY,\ + CASCADE,\ + CASE,\ + CHECK,\ + CHECKPOINT,\ + CLOSE,\ + CLUSTERED,\ + COALESCE,\ + COLLATE,\ + COLUMN,\ + COMMIT,\ + COMPUTE,\ + CONSTRAINT,\ + CONTAINS,\ + CONTAINSTABLE,\ + CONTINUE,\ + CONVERT,\ + CREATE,\ + CROSS,\ + CURRENT,\ + CURRENT_DATE,\ + CURRENT_TIME,\ + CURRENT_TIMESTAMP,\ + CURRENT_USER,\ + CURSOR,\ + DATABASE,\ + DBCC,\ + DEALLOCATE,\ + DECLARE,\ + DEFAULT,\ + DELETE,\ + DENY,\ + DESC,\ + DISK,\ + DISTINCT,\ + DISTRIBUTED,\ + DOUBLE,\ + DROP,\ + DUMMY,\ + DUMP,\ + ELSE,\ + END,\ + ERRLVL,\ + ESCAPE,\ + EXCEPT,\ + EXEC,\ + EXECUTE,\ + EXISTS,\ + EXIT,\ + FETCH,\ + FILE,\ + FILLFACTOR,\ + FOR,\ + FOREIGN,\ + FREETEXT,\ + FREETEXTTABLE,\ + FROM,\ + FULL,\ + FUNCTION,\ + GOTO,\ + GRANT,\ + GROUP,\ + HAVING,\ + HOLDLOCK,\ + IDENTITY,\ + IDENTITYCOL,\ + IDENTITY_INSERT,\ + IF,\ + IN,\ + INDEX,\ + INNER,\ + INSERT,\ + INTERSECT,\ + INTO,\ + IS,\ + JOIN,\ + KEY,\ + KILL,\ + LEFT,\ + LIKE,\ + LINENO,\ + LOAD,\ + NATIONAL,\ + NOCHECK,\ + NONCLUSTERED,\ + NOT,\ + NULL,\ + NULLIF,\ + OF,\ + OFF,\ + OFFSETS,\ + ON,\ + OPEN,\ + OPENDATASOURCE,\ + OPENQUERY,\ + OPENROWSET,\ + OPENXML,\ + OPTION,\ + OR,\ + ORDER,\ + OUTER,\ + OVER,\ + PERCENT,\ + PLAN,\ + PRECISION,\ + PRIMARY,\ + PRINT,\ + PROC,\ + PROCEDURE,\ + PUBLIC,\ + RAISERROR,\ + READ,\ + READTEXT,\ + RECONFIGURE,\ + REFERENCES,\ + REPLICATION,\ + RESTORE,\ + RESTRICT,\ + RETURN,\ + REVOKE,\ + RIGHT,\ + ROLLBACK,\ + ROWCOUNT,\ + ROWGUIDCOL,\ + RULE,\ + SAVE,\ + SCHEMA,\ + SELECT,\ + SESSION_USER,\ + SET,\ + SETUSER,\ + SHUTDOWN,\ + SOME,\ + STATISTICS,\ + SYSTEM_USER,\ + TABLE,\ + TEXTSIZE,\ + THEN,\ + TO,\ + TOP,\ + TRAN,\ + TRANSACTION,\ + TRIGGER,\ + TRUNCATE,\ + TSEQUAL,\ + UNION,\ + UNIQUE,\ + UPDATE,\ + UPDATETEXT,\ + USE,\ + USER,\ + VALUES,\ + VARYING,\ + VIEW,\ + WAITFOR,\ + WHEN,\ + WHERE,\ + WHILE,\ + WITH,\ + WRITETEXT + +# The character to append to attribute names to avoid exceptions due to +# clashes between keywords and attribute names +KeywordsMaskChar=_ + +#flags for loading and saving instances using DatabaseLoader/Saver +nominalToStringLimit=50 +idColumn=auto_generated_id + diff --git a/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.mssqlserver2005 b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.mssqlserver2005 new file mode 100644 index 00000000..eb7e2cc9 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.mssqlserver2005 @@ -0,0 +1,237 @@ +# Database settings for Microsoft SQL Server 2005 Express Edition +# +# General information on database access can be found here: +# https://waikato.github.io/weka-wiki/databases/ +# +# url: http://www.microsoft.com/ +# jdbc: http://msdn2.microsoft.com/en-us/data/aa937724.aspx +# author: Fracpete (fracpete at waikato dot ac dot nz) +# version: $Revision: 15255 $ + +# JDBC driver (comma-separated list) +jdbcDriver=com.microsoft.sqlserver.jdbc.SQLServerDriver + +# database URL +jdbcURL=jdbc:sqlserver://localhost;databaseName=blahblah + +# specific data types +# string, getString() = 0; --> nominal +# boolean, getBoolean() = 1; --> nominal +# double, getDouble() = 2; --> numeric +# byte, getByte() = 3; --> numeric +# short, getByte()= 4; --> numeric +# int, getInteger() = 5; --> numeric +# long, getLong() = 6; --> numeric +# float, getFloat() = 7; --> numeric +# date, getDate() = 8; --> date +# text, getString() = 9; --> string +# time, getTime() = 10; --> date +# timestamp, getTime() = 11; --> date + +varchar=0 +float=2 +tinyint=3 +int=5 + +# other options +CREATE_DOUBLE=DOUBLE PRECISION +CREATE_STRING=VARCHAR(8000) +CREATE_INT=INT +CREATE_DATE=DATETIME +DateFormat=yyyy-MM-dd HH:mm:ss +checkUpperCaseNames=false +checkLowerCaseNames=false +checkForTable=true + +# All the reserved keywords for this database +# Based on the keywords listed at the following URL (2009-04-13): +# http://msdn.microsoft.com/en-us/library/ms189822(SQL.90).aspx +Keywords=\ + ADD,\ + ALL,\ + ALTER,\ + AND,\ + ANY,\ + AS,\ + ASC,\ + AUTHORIZATION,\ + BACKUP,\ + BEGIN,\ + BETWEEN,\ + BREAK,\ + BROWSE,\ + BULK,\ + BY,\ + CASCADE,\ + CASE,\ + CHECK,\ + CHECKPOINT,\ + CLOSE,\ + CLUSTERED,\ + COALESCE,\ + COLLATE,\ + COLUMN,\ + COMMIT,\ + COMPUTE,\ + CONSTRAINT,\ + CONTAINS,\ + CONTAINSTABLE,\ + CONTINUE,\ + CONVERT,\ + CREATE,\ + CROSS,\ + CURRENT,\ + CURRENT_DATE,\ + CURRENT_TIME,\ + CURRENT_TIMESTAMP,\ + CURRENT_USER,\ + CURSOR,\ + DATABASE,\ + DBCC,\ + DEALLOCATE,\ + DECLARE,\ + DEFAULT,\ + DELETE,\ + DENY,\ + DESC,\ + DISK,\ + DISTINCT,\ + DISTRIBUTED,\ + DOUBLE,\ + DROP,\ + DUMP,\ + ELSE,\ + END,\ + ERRLVL,\ + ESCAPE,\ + EXCEPT,\ + EXEC,\ + EXECUTE,\ + EXISTS,\ + EXIT,\ + EXTERNAL,\ + FETCH,\ + FILE,\ + FILLFACTOR,\ + FOR,\ + FOREIGN,\ + FREETEXT,\ + FREETEXTTABLE,\ + FROM,\ + FULL,\ + FUNCTION,\ + GOTO,\ + GRANT,\ + GROUP,\ + HAVING,\ + HOLDLOCK,\ + IDENTITY,\ + IDENTITYCOL,\ + IDENTITY_INSERT,\ + IF,\ + IN,\ + INDEX,\ + INNER,\ + INSERT,\ + INTERSECT,\ + INTO,\ + IS,\ + JOIN,\ + KEY,\ + KILL,\ + LEFT,\ + LIKE,\ + LINENO,\ + LOAD,\ + NATIONAL,\ + NOCHECK,\ + NONCLUSTERED,\ + NOT,\ + NULL,\ + NULLIF,\ + OF,\ + OFF,\ + OFFSETS,\ + ON,\ + OPEN,\ + OPENDATASOURCE,\ + OPENQUERY,\ + OPENROWSET,\ + OPENXML,\ + OPTION,\ + OR,\ + ORDER,\ + OUTER,\ + OVER,\ + PERCENT,\ + PIVOT,\ + PLAN,\ + PRECISION,\ + PRIMARY,\ + PRINT,\ + PROC,\ + PROCEDURE,\ + PUBLIC,\ + RAISERROR,\ + READ,\ + READTEXT,\ + RECONFIGURE,\ + REFERENCES,\ + REPLICATION,\ + RESTORE,\ + RESTRICT,\ + RETURN,\ + REVERT,\ + REVOKE,\ + RIGHT,\ + ROLLBACK,\ + ROWCOUNT,\ + ROWGUIDCOL,\ + RULE,\ + SAVE,\ + SCHEMA,\ + SECURITYAUDIT,\ + SELECT,\ + SESSION_USER,\ + SET,\ + SETUSER,\ + SHUTDOWN,\ + SOME,\ + STATISTICS,\ + SYSTEM_USER,\ + TABLE,\ + TABLESAMPLE,\ + TEXTSIZE,\ + THEN,\ + TO,\ + TOP,\ + TRAN,\ + TRANSACTION,\ + TRIGGER,\ + TRUNCATE,\ + TSEQUAL,\ + UNION,\ + UNIQUE,\ + UNPIVOT,\ + UPDATE,\ + UPDATETEXT,\ + USE,\ + USER,\ + VALUES,\ + VARYING,\ + VIEW,\ + WAITFOR,\ + WHEN,\ + WHERE,\ + WHILE,\ + WITH,\ + WRITETEXT + +# The character to append to attribute names to avoid exceptions due to +# clashes between keywords and attribute names +KeywordsMaskChar=_ + +#flags for loading and saving instances using DatabaseLoader/Saver +nominalToStringLimit=50 +idColumn=auto_generated_id + diff --git a/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.mysql b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.mysql new file mode 100644 index 00000000..593d09e3 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.mysql @@ -0,0 +1,280 @@ +# Database settings for MySQL 3.23.x, 4.x +# +# General information on database access can be found here: +# https://waikato.github.io/weka-wiki/databases/ +# +# url: http://www.mysql.com/ +# jdbc: http://www.mysql.com/products/connector/j/ +# author: Fracpete (fracpete at waikato dot ac dot nz) +# version: $Revision: 15652 $ + +# JDBC driver (comma-separated list) +jdbcDriver=org.gjt.mm.mysql.Driver + +# database URL +jdbcURL=jdbc:mysql://server_name:3306/database_name?nullDatabaseMeansCurrent=true + +# specific data types +# string, getString() = 0; --> nominal +# boolean, getBoolean() = 1; --> nominal +# double, getDouble() = 2; --> numeric +# byte, getByte() = 3; --> numeric +# short, getByte()= 4; --> numeric +# int, getInteger() = 5; --> numeric +# long, getLong() = 6; --> numeric +# float, getFloat() = 7; --> numeric +# date, getDate() = 8; --> date +# text, getString() = 9; --> string +# time, getTime() = 10; --> date +# timestamp, getTime() = 11; --> date + +# other options +CREATE_DOUBLE=DOUBLE +CREATE_STRING=TEXT +CREATE_INT=INT +CREATE_DATE=DATETIME +DateFormat=yyyy-MM-dd HH:mm:ss +checkUpperCaseNames=false +checkLowerCaseNames=false +checkForTable=true + +# All the reserved keywords for this database +# Based on the keywords listed at the following URL (2009-04-13): +# http://dev.mysql.com/doc/mysqld-version-reference/en/mysqld-version-reference-reservedwords-5-0.html +Keywords=\ + ADD,\ + ALL,\ + ALTER,\ + ANALYZE,\ + AND,\ + AS,\ + ASC,\ + ASENSITIVE,\ + BEFORE,\ + BETWEEN,\ + BIGINT,\ + BINARY,\ + BLOB,\ + BOTH,\ + BY,\ + CALL,\ + CASCADE,\ + CASE,\ + CHANGE,\ + CHAR,\ + CHARACTER,\ + CHECK,\ + COLLATE,\ + COLUMN,\ + COLUMNS,\ + CONDITION,\ + CONNECTION,\ + CONSTRAINT,\ + CONTINUE,\ + CONVERT,\ + CREATE,\ + CROSS,\ + CURRENT_DATE,\ + CURRENT_TIME,\ + CURRENT_TIMESTAMP,\ + CURRENT_USER,\ + CURSOR,\ + DATABASE,\ + DATABASES,\ + DAY_HOUR,\ + DAY_MICROSECOND,\ + DAY_MINUTE,\ + DAY_SECOND,\ + DEC,\ + DECIMAL,\ + DECLARE,\ + DEFAULT,\ + DELAYED,\ + DELETE,\ + DESC,\ + DESCRIBE,\ + DETERMINISTIC,\ + DISTINCT,\ + DISTINCTROW,\ + DIV,\ + DOUBLE,\ + DROP,\ + DUAL,\ + EACH,\ + ELSE,\ + ELSEIF,\ + ENCLOSED,\ + ESCAPED,\ + EXISTS,\ + EXIT,\ + EXPLAIN,\ + FALSE,\ + FETCH,\ + FIELDS,\ + FLOAT,\ + FLOAT4,\ + FLOAT8,\ + FOR,\ + FORCE,\ + FOREIGN,\ + FROM,\ + FULLTEXT,\ + GOTO,\ + GRANT,\ + GROUP,\ + HAVING,\ + HIGH_PRIORITY,\ + HOUR_MICROSECOND,\ + HOUR_MINUTE,\ + HOUR_SECOND,\ + IF,\ + IGNORE,\ + IN,\ + INDEX,\ + INFILE,\ + INNER,\ + INOUT,\ + INSENSITIVE,\ + INSERT,\ + INT,\ + INT1,\ + INT2,\ + INT3,\ + INT4,\ + INT8,\ + INTEGER,\ + INTERVAL,\ + INTO,\ + IS,\ + ITERATE,\ + JOIN,\ + KEY,\ + KEYS,\ + KILL,\ + LABEL,\ + LEADING,\ + LEAVE,\ + LEFT,\ + LIKE,\ + LIMIT,\ + LINES,\ + LOAD,\ + LOCALTIME,\ + LOCALTIMESTAMP,\ + LOCK,\ + LONG,\ + LONGBLOB,\ + LONGTEXT,\ + LOOP,\ + LOW_PRIORITY,\ + MATCH,\ + MEDIUMBLOB,\ + MEDIUMINT,\ + MEDIUMTEXT,\ + MIDDLEINT,\ + MINUTE_MICROSECOND,\ + MINUTE_SECOND,\ + MOD,\ + MODIFIES,\ + NATURAL,\ + NOT,\ + NO_WRITE_TO_BINLOG,\ + NULL,\ + NUMERIC,\ + ON,\ + OPTIMIZE,\ + OPTION,\ + OPTIONALLY,\ + OR,\ + ORDER,\ + OUT,\ + OUTER,\ + OUTFILE,\ + PRECISION,\ + PRIMARY,\ + PRIVILEGES,\ + PROCEDURE,\ + PURGE,\ + READ,\ + READS,\ + REAL,\ + REFERENCES,\ + REGEXP,\ + RELEASE,\ + RENAME,\ + REPEAT,\ + REPLACE,\ + REQUIRE,\ + RESTRICT,\ + RETURN,\ + REVOKE,\ + RIGHT,\ + RLIKE,\ + SCHEMA,\ + SCHEMAS,\ + SECOND_MICROSECOND,\ + SELECT,\ + SENSITIVE,\ + SEPARATOR,\ + SET,\ + SHOW,\ + SMALLINT,\ + SONAME,\ + SPATIAL,\ + SPECIFIC,\ + SQL,\ + SQLEXCEPTION,\ + SQLSTATE,\ + SQLWARNING,\ + SQL_BIG_RESULT,\ + SQL_CALC_FOUND_ROWS,\ + SQL_SMALL_RESULT,\ + SSL,\ + STARTING,\ + STRAIGHT_JOIN,\ + TABLE,\ + TABLES,\ + TERMINATED,\ + THEN,\ + TINYBLOB,\ + TINYINT,\ + TINYTEXT,\ + TO,\ + TRAILING,\ + TRIGGER,\ + TRUE,\ + UNDO,\ + UNION,\ + UNIQUE,\ + UNLOCK,\ + UNSIGNED,\ + UPDATE,\ + UPGRADE,\ + USAGE,\ + USE,\ + USING,\ + UTC_DATE,\ + UTC_TIME,\ + UTC_TIMESTAMP,\ + VALUES,\ + VARBINARY,\ + VARCHAR,\ + VARCHARACTER,\ + VARYING,\ + WHEN,\ + WHERE,\ + WHILE,\ + WITH,\ + WRITE,\ + XOR,\ + YEAR_MONTH,\ + ZEROFILL + +# The character to append to attribute names to avoid exceptions due to +# clashes between keywords and attribute names +KeywordsMaskChar=_ + +#flags for loading and saving instances using DatabaseLoader/Saver +nominalToStringLimit=50 +idColumn=auto_generated_id + diff --git a/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.odbc b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.odbc new file mode 100644 index 00000000..ccc3fa6c --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.odbc @@ -0,0 +1,66 @@ +# Database settings for ODBC in conjunction with MS SQL Server 2000 +# +# General information on database access can be found here: +# https://waikato.github.io/weka-wiki/databases/ +# +# url: https://waikato.github.io/weka-wiki/windows_databases/ +# author: Fracpete (fracpete at waikato dot ac dot nz) +# version: $Revision: 15255 $ + +# JDBC driver (comma-separated list) +jdbcDriver=sun.jdbc.odbc.JdbcOdbcDriver + +# database URL +jdbcURL=jdbc:odbc:DSN_name + +# specific data types +# string, getString() = 0; --> nominal +# boolean, getBoolean() = 1; --> nominal +# double, getDouble() = 2; --> numeric +# byte, getByte() = 3; --> numeric +# short, getByte()= 4; --> numeric +# int, getInteger() = 5; --> numeric +# long, getLong() = 6; --> numeric +# float, getFloat() = 7; --> numeric +# date, getDate() = 8; --> date +# text, getString() = 9; --> string +# time, getTime() = 10; --> date +# timestamp, getTime() = 11; --> date + +varchar=0 +float=2 +tinyint=3 +int=5 + +# other options +CREATE_DOUBLE=DOUBLE PRECISION +CREATE_STRING=VARCHAR(8000) +CREATE_INT=INT +CREATE_DATE=DATETIME +DateFormat=yyyy-MM-dd HH:mm:ss +checkUpperCaseNames=false +checkLowerCaseNames=false +checkForTable=true + +# All the reserved keywords for this database +Keywords=\ + AND,\ + ASC,\ + BY,\ + DESC,\ + FROM,\ + GROUP,\ + INSERT,\ + ORDER,\ + SELECT,\ + UPDATE,\ + WHERE + +# The character to append to attribute names to avoid exceptions due to +# clashes between keywords and attribute names +KeywordsMaskChar=_ + +#flags for loading and saving instances using DatabaseLoader/Saver +nominalToStringLimit=50 +idColumn=auto_generated_id + diff --git a/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.oracle b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.oracle new file mode 100644 index 00000000..b766e8f0 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.oracle @@ -0,0 +1,165 @@ +# Database settings for Oracle 10g Express Edition +# +# General information on database access can be found here: +# https://waikato.github.io/weka-wiki/databases/ +# +# url: http://www.oracle.com/ +# jdbc: http://www.oracle.com/technology/software/tech/java/sqlj_jdbc/ +# author: Fracpete (fracpete at waikato dot ac dot nz) +# version: $Revision: 15255 $ + +# JDBC driver (comma-separated list) +jdbcDriver=oracle.jdbc.driver.OracleDriver + +# database URL +jdbcURL=jdbc:oracle:thin:@server_name:1521:XE + +# specific data types +# string, getString() = 0; --> nominal +# boolean, getBoolean() = 1; --> nominal +# double, getDouble() = 2; --> numeric +# byte, getByte() = 3; --> numeric +# short, getByte()= 4; --> numeric +# int, getInteger() = 5; --> numeric +# long, getLong() = 6; --> numeric +# float, getFloat() = 7; --> numeric +# date, getDate() = 8; --> date +# text, getString() = 9; --> string +# time, getTime() = 10; --> date + +VARCHAR2=0 +NUMBER=2 +DOUBLE_PRECISION=2 +TIMESTAMP=8 + +# other options +CREATE_INT=INTEGER +CREATE_STRING=VARCHAR2(4000) +CREATE_DOUBLE=NUMBER +CREATE_DATE=TIMESTAMP +DateFormat=yyyy-MM-dd HH:mm:ss +checkUpperCaseNames=true +checkForTable=true + +# All the reserved keywords for this database +# Based on the keywords listed at the following URL (2009-04-13): +# http://download.oracle.com/docs/cd/B19306_01/server.102/b14200/ap_keywd.htm +Keywords=\ + ACCESS,\ + ADD,\ + ALL,\ + ALTER,\ + AND,\ + ANY,\ + AS,\ + ASC,\ + AUDIT,\ + BETWEEN,\ + BY,\ + CHAR,\ + CHECK,\ + CLUSTER,\ + COLUMN,\ + COMMENT,\ + COMPRESS,\ + CONNECT,\ + CREATE,\ + CURRENT,\ + DATE,\ + DECIMAL,\ + DEFAULT,\ + DELETE,\ + DESC,\ + DISTINCT,\ + DROP,\ + ELSE,\ + EXCLUSIVE,\ + EXISTS,\ + FILE,\ + FLOAT,\ + FOR,\ + FROM,\ + GRANT,\ + GROUP,\ + HAVING,\ + IDENTIFIED,\ + IMMEDIATE,\ + IN,\ + INCREMENT,\ + INDEX,\ + INITIAL,\ + INSERT,\ + INTEGER,\ + INTERSECT,\ + INTO,\ + IS,\ + LEVEL,\ + LIKE,\ + LOCK,\ + LONG,\ + MAXEXTENTS,\ + MINUS,\ + MLSLABEL,\ + MODE,\ + MODIFY,\ + NOAUDIT,\ + NOCOMPRESS,\ + NOT,\ + NOWAIT,\ + NULL,\ + NUMBER,\ + OF,\ + OFFLINE,\ + ON,\ + ONLINE,\ + OPTION,\ + OR,\ + ORDER,\ + PCTFREE,\ + PRIOR,\ + PRIVILEGES,\ + PUBLIC,\ + RAW,\ + RENAME,\ + RESOURCE,\ + REVOKE,\ + ROW,\ + ROWID,\ + ROWNUM,\ + ROWS,\ + SELECT,\ + SESSION,\ + SET,\ + SHARE,\ + SIZE,\ + SMALLINT,\ + START,\ + SUCCESSFUL,\ + SYNONYM,\ + SYSDATE,\ + TABLE,\ + THEN,\ + TO,\ + TRIGGER,\ + UID,\ + UNION,\ + UNIQUE,\ + UPDATE,\ + USER,\ + VALIDATE,\ + VALUES,\ + VARCHAR,\ + VARCHAR2,\ + VIEW,\ + WHENEVER,\ + WHERE,\ + WITH + +# The character to append to attribute names to avoid exceptions due to +# clashes between keywords and attribute names +KeywordsMaskChar=_ + +#flags for loading and saving instances using DatabaseLoader/Saver +nominalToStringLimit=50 +idColumn=auto_generated_id + diff --git a/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.postgresql b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.postgresql new file mode 100644 index 00000000..85c2706c --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.postgresql @@ -0,0 +1,601 @@ +# Database settings for PostgreSQL 7.4 +# +# General information on database access can be found here: +# https://waikato.github.io/weka-wiki/databases/ +# +# url: http://www.postgresql.org/ +# jdbc: http://jdbc.postgresql.org/ +# author: Fracpete (fracpete at waikato dot ac dot nz) +# version: $Revision: 15255 $ + +# JDBC driver (comma-separated list) +jdbcDriver=org.postgresql.Driver + +# database URL +jdbcURL=jdbc:postgresql://server_name:5432/database_name + +# specific data types +# string, getString() = 0; --> nominal +# boolean, getBoolean() = 1; --> nominal +# double, getDouble() = 2; --> numeric +# byte, getByte() = 3; --> numeric +# short, getByte()= 4; --> numeric +# int, getInteger() = 5; --> numeric +# long, getLong() = 6; --> numeric +# float, getFloat() = 7; --> numeric +# date, getDate() = 8; --> date +# text, getString() = 9; --> string +# time, getTime() = 10; --> date +# timestamp, getTime() = 11; --> date + +# PostgreSQL data types to Java classes information can be found at: +# http://www.postgresql.org/message-id/AANLkTinsk4rwT7v-751bwQkgTN1rkA=8uE-jk69nape-@mail.gmail.com +varchar=0 +text=0 +float4=7 +float8=2 +int4=5 +oid=5 +timestamp=8 +date=8 + +int2=5 +int8=2 +numeric=2 +bpchar=9 + +# other options +CREATE_DOUBLE=float8 +CREATE_STRING=text +CREATE_INT=int +CREATE_DATE=TIMESTAMP +DateFormat=yyyy-MM-dd HH:mm:ss +checkUpperCaseNames=false +checkLowerCaseNames=true +checkForTable=true + +# All the reserved keywords for this database +# Based on the keywords listed at the following URL (2009-04-13): +# http://www.postgresql.org/docs/7.4/static/sql-keywords-appendix.html +Keywords=\ + ABORT,\ + ABS,\ + ABSOLUTE,\ + ACCESS,\ + ACTION,\ + ADA,\ + ADD,\ + ADMIN,\ + AFTER,\ + AGGREGATE,\ + ALIAS,\ + ALL,\ + ALLOCATE,\ + ALTER,\ + ANALYSE,\ + ANALYZE,\ + AND,\ + ANY,\ + ARE,\ + ARRAY,\ + AS,\ + ASC,\ + ASENSITIVE,\ + ASSERTION,\ + ASSIGNMENT,\ + ASYMMETRIC,\ + AT,\ + ATOMIC,\ + AUTHORIZATION,\ + AVG,\ + BACKWARD,\ + BEFORE,\ + BEGIN,\ + BETWEEN,\ + BIGINT,\ + BINARY,\ + BIT,\ + BITVAR,\ + BIT_LENGTH,\ + BLOB,\ + BOOLEAN,\ + BOTH,\ + BREADTH,\ + BY,\ + C,\ + CACHE,\ + CALL,\ + CALLED,\ + CARDINALITY,\ + CASCADE,\ + CASCADED,\ + CASE,\ + CAST,\ + CATALOG,\ + CATALOG_NAME,\ + CHAIN,\ + CHAR,\ + CHARACTER,\ + CHARACTERISTICS,\ + CHARACTER_LENGTH,\ + CHARACTER_SET_CATALOG,\ + CHARACTER_SET_NAME,\ + CHARACTER_SET_SCHEMA,\ + CHAR_LENGTH,\ + CHECK,\ + CHECKED,\ + CHECKPOINT,\ + CLASS,\ + CLASS_ORIGIN,\ + CLOB,\ + CLOSE,\ + CLUSTER,\ + COALESCE,\ + COBOL,\ + COLLATE,\ + COLLATION,\ + COLLATION_CATALOG,\ + COLLATION_NAME,\ + COLLATION_SCHEMA,\ + COLUMN,\ + COLUMN_NAME,\ + COMMAND_FUNCTION,\ + COMMAND_FUNCTION_CODE,\ + COMMENT,\ + COMMIT,\ + COMMITTED,\ + COMPLETION,\ + CONDITION_NUMBER,\ + CONNECT,\ + CONNECTION,\ + CONNECTION_NAME,\ + CONSTRAINT,\ + CONSTRAINTS,\ + CONSTRAINT_CATALOG,\ + CONSTRAINT_NAME,\ + CONSTRAINT_SCHEMA,\ + CONSTRUCTOR,\ + CONTAINS,\ + CONTINUE,\ + CONVERSION,\ + CONVERT,\ + COPY,\ + CORRESPONDING,\ + COUNT,\ + CREATE,\ + CREATEDB,\ + CREATEUSER,\ + CROSS,\ + CUBE,\ + CURRENT,\ + CURRENT_DATE,\ + CURRENT_PATH,\ + CURRENT_ROLE,\ + CURRENT_TIME,\ + CURRENT_TIMESTAMP,\ + CURRENT_USER,\ + CURSOR,\ + CURSOR_NAME,\ + CYCLE,\ + DATA,\ + DATABASE,\ + DATE,\ + DATETIME_INTERVAL_CODE,\ + DATETIME_INTERVAL_PRECISION,\ + DAY,\ + DEALLOCATE,\ + DEC,\ + DECIMAL,\ + DECLARE,\ + DEFAULT,\ + DEFAULTS,\ + DEFERRABLE,\ + DEFERRED,\ + DEFINED,\ + DEFINER,\ + DELETE,\ + DELIMITER,\ + DELIMITERS,\ + DEPTH,\ + DEREF,\ + DESC,\ + DESCRIBE,\ + DESCRIPTOR,\ + DESTROY,\ + DESTRUCTOR,\ + DETERMINISTIC,\ + DIAGNOSTICS,\ + DICTIONARY,\ + DISCONNECT,\ + DISPATCH,\ + DISTINCT,\ + DO,\ + DOMAIN,\ + DOUBLE,\ + DROP,\ + DYNAMIC,\ + DYNAMIC_FUNCTION,\ + DYNAMIC_FUNCTION_CODE,\ + EACH,\ + ELSE,\ + ENCODING,\ + ENCRYPTED,\ + END,\ + END-EXEC,\ + EQUALS,\ + ESCAPE,\ + EVERY,\ + EXCEPT,\ + EXCEPTION,\ + EXCLUDING,\ + EXCLUSIVE,\ + EXEC,\ + EXECUTE,\ + EXISTING,\ + EXISTS,\ + EXPLAIN,\ + EXTERNAL,\ + EXTRACT,\ + FALSE,\ + FETCH,\ + FINAL,\ + FIRST,\ + FLOAT,\ + FOR,\ + FORCE,\ + FOREIGN,\ + FORTRAN,\ + FORWARD,\ + FOUND,\ + FREE,\ + FREEZE,\ + FROM,\ + FULL,\ + FUNCTION,\ + G,\ + GENERAL,\ + GENERATED,\ + GET,\ + GLOBAL,\ + GO,\ + GOTO,\ + GRANT,\ + GRANTED,\ + GROUP,\ + GROUPING,\ + HANDLER,\ + HAVING,\ + HIERARCHY,\ + HOLD,\ + HOST,\ + HOUR,\ + IDENTITY,\ + IGNORE,\ + ILIKE,\ + IMMEDIATE,\ + IMMUTABLE,\ + IMPLEMENTATION,\ + IMPLICIT,\ + IN,\ + INCLUDING,\ + INCREMENT,\ + INDEX,\ + INDICATOR,\ + INFIX,\ + INHERITS,\ + INITIALIZE,\ + INITIALLY,\ + INNER,\ + INOUT,\ + INPUT,\ + INSENSITIVE,\ + INSERT,\ + INSTANCE,\ + INSTANTIABLE,\ + INSTEAD,\ + INT,\ + INTEGER,\ + INTERSECT,\ + INTERVAL,\ + INTO,\ + INVOKER,\ + IS,\ + ISNULL,\ + ISOLATION,\ + ITERATE,\ + JOIN,\ + K,\ + KEY,\ + KEY_MEMBER,\ + KEY_TYPE,\ + LANCOMPILER,\ + LANGUAGE,\ + LARGE,\ + LAST,\ + LATERAL,\ + LEADING,\ + LEFT,\ + LENGTH,\ + LESS,\ + LEVEL,\ + LIKE,\ + LIMIT,\ + LISTEN,\ + LOAD,\ + LOCAL,\ + LOCALTIME,\ + LOCALTIMESTAMP,\ + LOCATION,\ + LOCATOR,\ + LOCK,\ + LOWER,\ + M,\ + MAP,\ + MATCH,\ + MAX,\ + MAXVALUE,\ + MESSAGE_LENGTH,\ + MESSAGE_OCTET_LENGTH,\ + MESSAGE_TEXT,\ + METHOD,\ + MIN,\ + MINUTE,\ + MINVALUE,\ + MOD,\ + MODE,\ + MODIFIES,\ + MODIFY,\ + MODULE,\ + MONTH,\ + MORE,\ + MOVE,\ + MUMPS,\ + NAME,\ + NAMES,\ + NATIONAL,\ + NATURAL,\ + NCHAR,\ + NCLOB,\ + NEW,\ + NEXT,\ + NO,\ + NOCREATEDB,\ + NOCREATEUSER,\ + NONE,\ + NOT,\ + NOTHING,\ + NOTIFY,\ + NOTNULL,\ + NULL,\ + NULLABLE,\ + NULLIF,\ + NUMBER,\ + NUMERIC,\ + OBJECT,\ + OCTET_LENGTH,\ + OF,\ + OFF,\ + OFFSET,\ + OIDS,\ + OLD,\ + ON,\ + ONLY,\ + OPEN,\ + OPERATION,\ + OPERATOR,\ + OPTION,\ + OPTIONS,\ + OR,\ + ORDER,\ + ORDINALITY,\ + OUT,\ + OUTER,\ + OUTPUT,\ + OVERLAPS,\ + OVERLAY,\ + OVERRIDING,\ + OWNER,\ + PAD,\ + PARAMETER,\ + PARAMETERS,\ + PARAMETER_MODE,\ + PARAMETER_NAME,\ + PARAMETER_ORDINAL_POSITION,\ + PARAMETER_SPECIFIC_CATALOG,\ + PARAMETER_SPECIFIC_NAME,\ + PARAMETER_SPECIFIC_SCHEMA,\ + PARTIAL,\ + PASCAL,\ + PASSWORD,\ + PATH,\ + PENDANT,\ + PLACING,\ + PLI,\ + POSITION,\ + POSTFIX,\ + PRECISION,\ + PREFIX,\ + PREORDER,\ + PREPARE,\ + PRESERVE,\ + PRIMARY,\ + PRIOR,\ + PRIVILEGES,\ + PROCEDURAL,\ + PROCEDURE,\ + PUBLIC,\ + READ,\ + READS,\ + REAL,\ + RECHECK,\ + RECURSIVE,\ + REF,\ + REFERENCES,\ + REFERENCING,\ + REINDEX,\ + RELATIVE,\ + RENAME,\ + REPEATABLE,\ + REPLACE,\ + RESET,\ + RESTART,\ + RESTRICT,\ + RESULT,\ + RETURN,\ + RETURNED_LENGTH,\ + RETURNED_OCTET_LENGTH,\ + RETURNED_SQLSTATE,\ + RETURNS,\ + REVOKE,\ + RIGHT,\ + ROLE,\ + ROLLBACK,\ + ROLLUP,\ + ROUTINE,\ + ROUTINE_CATALOG,\ + ROUTINE_NAME,\ + ROUTINE_SCHEMA,\ + ROW,\ + ROWS,\ + ROW_COUNT,\ + RULE,\ + SAVEPOINT,\ + SCALE,\ + SCHEMA,\ + SCHEMA_NAME,\ + SCOPE,\ + SCROLL,\ + SEARCH,\ + SECOND,\ + SECTION,\ + SECURITY,\ + SELECT,\ + SELF,\ + SENSITIVE,\ + SEQUENCE,\ + SERIALIZABLE,\ + SERVER_NAME,\ + SESSION,\ + SESSION_USER,\ + SET,\ + SETOF,\ + SETS,\ + SHARE,\ + SHOW,\ + SIMILAR,\ + SIMPLE,\ + SIZE,\ + SMALLINT,\ + SOME,\ + SOURCE,\ + SPACE,\ + SPECIFIC,\ + SPECIFICTYPE,\ + SPECIFIC_NAME,\ + SQL,\ + SQLCODE,\ + SQLERROR,\ + SQLEXCEPTION,\ + SQLSTATE,\ + SQLWARNING,\ + STABLE,\ + START,\ + STATE,\ + STATEMENT,\ + STATIC,\ + STATISTICS,\ + STDIN,\ + STDOUT,\ + STORAGE,\ + STRICT,\ + STRUCTURE,\ + STYLE,\ + SUBCLASS_ORIGIN,\ + SUBLIST,\ + SUBSTRING,\ + SUM,\ + SYMMETRIC,\ + SYSID,\ + SYSTEM,\ + SYSTEM_USER,\ + TABLE,\ + TABLE_NAME,\ + TEMP,\ + TEMPLATE,\ + TEMPORARY,\ + TERMINATE,\ + THAN,\ + THEN,\ + TIME,\ + TIMESTAMP,\ + TIMEZONE_HOUR,\ + TIMEZONE_MINUTE,\ + TO,\ + TOAST,\ + TRAILING,\ + TRANSACTION,\ + TRANSACTIONS_COMMITTED,\ + TRANSACTIONS_ROLLED_BACK,\ + TRANSACTION_ACTIVE,\ + TRANSFORM,\ + TRANSFORMS,\ + TRANSLATE,\ + TRANSLATION,\ + TREAT,\ + TRIGGER,\ + TRIGGER_CATALOG,\ + TRIGGER_NAME,\ + TRIGGER_SCHEMA,\ + TRIM,\ + TRUE,\ + TRUNCATE,\ + TRUSTED,\ + TYPE,\ + UNCOMMITTED,\ + UNDER,\ + UNENCRYPTED,\ + UNION,\ + UNIQUE,\ + UNKNOWN,\ + UNLISTEN,\ + UNNAMED,\ + UNNEST,\ + UNTIL,\ + UPDATE,\ + UPPER,\ + USAGE,\ + USER,\ + USER_DEFINED_TYPE_CATALOG,\ + USER_DEFINED_TYPE_NAME,\ + USER_DEFINED_TYPE_SCHEMA,\ + USING,\ + VACUUM,\ + VALID,\ + VALIDATOR,\ + VALUE,\ + VALUES,\ + VARCHAR,\ + VARIABLE,\ + VARYING,\ + VERBOSE,\ + VERSION,\ + VIEW,\ + VOLATILE,\ + WHEN,\ + WHENEVER,\ + WHERE,\ + WITH,\ + WITHOUT,\ + WORK,\ + WRITE,\ + YEAR,\ + ZONE + +# The character to append to attribute names to avoid exceptions due to +# clashes between keywords and attribute names +KeywordsMaskChar=_ + +#flags for loading and saving instances using DatabaseLoader/Saver +nominalToStringLimit=50 +idColumn=auto_generated_id + diff --git a/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.sqlite3 b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.sqlite3 new file mode 100644 index 00000000..de5813af --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/experiment/DatabaseUtils.props.sqlite3 @@ -0,0 +1,172 @@ +# Database settings for sqlite 3.x +# +# General information on database access can be found here: +# https://waikato.github.io/weka-wiki/databases/ +# +# url: http://www.sqlite.org/ +# jdbc: http://www.zentus.com/sqlitejdbc/ +# author: Fracpete (fracpete at waikato dot ac dot nz) +# version: $Revision: 15255 $ + +# JDBC driver (comma-separated list) +jdbcDriver=org.sqlite.JDBC + +# database URL +jdbcURL=jdbc:sqlite:/path/to/database.db + +# specific data types +# string, getString() = 0; --> nominal +# boolean, getBoolean() = 1; --> nominal +# double, getDouble() = 2; --> numeric +# byte, getByte() = 3; --> numeric +# short, getByte()= 4; --> numeric +# int, getInteger() = 5; --> numeric +# long, getLong() = 6; --> numeric +# float, getFloat() = 7; --> numeric +# date, getDate() = 8; --> date +# text, getString() = 9; --> string +# time, getTime() = 10; --> date +# timestamp, getTime() = 11; --> date + +# other options +CREATE_DOUBLE=DOUBLE +CREATE_STRING=TEXT +CREATE_INT=INT +CREATE_DATE=DATETIME +DateFormat=yyyy-MM-dd HH:mm:ss +checkUpperCaseNames=false +checkLowerCaseNames=false +checkForTable=true + +# All the reserved keywords for this database +# Based on the keywords listed at the following URL (2009-04-13): +# http://www.sqlite.org/lang_keywords.html +Keywords=\ + ABORT,\ + ADD,\ + AFTER,\ + ALL,\ + ALTER,\ + ANALYZE,\ + AND,\ + AS,\ + ASC,\ + ATTACH,\ + AUTOINCREMENT,\ + BEFORE,\ + BEGIN,\ + BETWEEN,\ + BY,\ + CASCADE,\ + CASE,\ + CAST,\ + CHECK,\ + COLLATE,\ + COLUMN,\ + COMMIT,\ + CONFLICT,\ + CONSTRAINT,\ + CREATE,\ + CROSS,\ + CURRENT_DATE,\ + CURRENT_TIME,\ + CURRENT_TIMESTAMP,\ + DATABASE,\ + DEFAULT,\ + DEFERRABLE,\ + DEFERRED,\ + DELETE,\ + DESC,\ + DETACH,\ + DISTINCT,\ + DROP,\ + EACH,\ + ELSE,\ + END,\ + ESCAPE,\ + EXCEPT,\ + EXCLUSIVE,\ + EXISTS,\ + EXPLAIN,\ + FAIL,\ + FOR,\ + FOREIGN,\ + FROM,\ + FULL,\ + GLOB,\ + GROUP,\ + HAVING,\ + IF,\ + IGNORE,\ + IMMEDIATE,\ + IN,\ + INDEX,\ + INDEXED,\ + INITIALLY,\ + INNER,\ + INSERT,\ + INSTEAD,\ + INTERSECT,\ + INTO,\ + IS,\ + ISNULL,\ + JOIN,\ + KEY,\ + LEFT,\ + LIKE,\ + LIMIT,\ + MATCH,\ + NATURAL,\ + NOT,\ + NOTNULL,\ + NULL,\ + OF,\ + OFFSET,\ + ON,\ + OR,\ + ORDER,\ + OUTER,\ + PLAN,\ + PRAGMA,\ + PRIMARY,\ + QUERY,\ + RAISE,\ + REFERENCES,\ + REGEXP,\ + REINDEX,\ + RELEASE,\ + RENAME,\ + REPLACE,\ + RESTRICT,\ + RIGHT,\ + ROLLBACK,\ + ROW,\ + SAVEPOINT,\ + SELECT,\ + SET,\ + TABLE,\ + TEMP,\ + TEMPORARY,\ + THEN,\ + TO,\ + TRANSACTION,\ + TRIGGER,\ + UNION,\ + UNIQUE,\ + UPDATE,\ + USING,\ + VACUUM,\ + VALUES,\ + VIEW,\ + VIRTUAL,\ + WHEN,\ + WHERE + +# The character to append to attribute names to avoid exceptions due to +# clashes between keywords and attribute names +KeywordsMaskChar=_ + +#flags for loading and saving instances using DatabaseLoader/Saver +nominalToStringLimit=50 +idColumn=auto_generated_id + diff --git a/workflow/apps/java/clustering/bin/weka/experiment/DensityBasedClustererSplitEvaluator.class b/workflow/apps/java/clustering/bin/weka/experiment/DensityBasedClustererSplitEvaluator.class new file mode 100644 index 00000000..04c6415f Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/experiment/DensityBasedClustererSplitEvaluator.class differ diff --git a/workflow/apps/java/clustering/bin/weka/experiment/Experiment.class b/workflow/apps/java/clustering/bin/weka/experiment/Experiment.class new file mode 100644 index 00000000..158887e2 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/experiment/Experiment.class differ diff --git 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b/workflow/apps/java/clustering/bin/weka/gui/GUIChooserApp.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GUIEditors.props b/workflow/apps/java/clustering/bin/weka/gui/GUIEditors.props new file mode 100644 index 00000000..a5abc829 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/GUIEditors.props @@ -0,0 +1,93 @@ +# Mappings for classes to be handled in the GenericObjectEditor +# +# Format: +# = +# +# Notes: +# - array classes have to be suffixed with "[]" +# - full classname has to be provided +# +# author: FracPete (fracpete at waikato dot ac dot nz) +# version: $Revision: 15707 $ + +# whether to show the large tooltip with the global info and capabilities +# in the class tree +ShowGlobalInfoToolTip=true + +# general +java.lang.Object[]=weka.gui.GenericArrayEditor +java.io.File=weka.gui.FileEditor +java.text.SimpleDateFormat=weka.gui.SimpleDateFormatEditor +java.io.File[]=weka.gui.GenericArrayEditor + +# core +weka.core.SelectedTag=weka.gui.SelectedTagEditor +weka.core.DistanceFunction=weka.gui.GenericObjectEditor +weka.core.Range=weka.gui.RangeEditor +weka.core.Range[]=weka.gui.GenericArrayEditor +weka.core.converters.Loader=weka.gui.GenericObjectEditor +weka.core.converters.Saver=weka.gui.GenericObjectEditor +weka.core.neighboursearch.NearestNeighbourSearch=weka.gui.GenericObjectEditor +weka.core.neighboursearch.balltrees.BallTreeConstructor=weka.gui.GenericObjectEditor +weka.core.neighboursearch.balltrees.BallSplitter=weka.gui.GenericObjectEditor +weka.core.neighboursearch.kdtrees.KDTreeNodeSplitter=weka.gui.GenericObjectEditor +weka.core.stemmers.Stemmer=weka.gui.GenericObjectEditor +weka.core.stopwords.StopwordsHandler=weka.gui.GenericObjectEditor +weka.core.stopwords.StopwordsHandler[]=weka.gui.GenericArrayEditor +weka.core.tokenizers.Tokenizer=weka.gui.GenericObjectEditor + +# estimators +weka.estimators.Estimator=weka.gui.GenericObjectEditor +weka.estimators.Estimator[]=weka.gui.GenericArrayEditor + +# univariate estimators +weka.estimators.UnivariateDensityEstimator=weka.gui.GenericObjectEditor +weka.estimators.UnivariateDensityEstimator[]=weka.gui.GenericArrayEditor + +# filters +weka.filters.Filter=weka.gui.GenericObjectEditor +weka.filters.Filter[]=weka.gui.GenericArrayEditor + +# classifiers +weka.classifiers.Classifier=weka.gui.GenericObjectEditor +weka.classifiers.IterativeClassifier=weka.gui.GenericObjectEditor +weka.classifiers.Classifier[]=weka.gui.GenericArrayEditor +weka.classifiers.CostMatrix=weka.gui.CostMatrixEditor +weka.classifiers.bayes.net.search.SearchAlgorithm=weka.gui.GenericObjectEditor +weka.classifiers.bayes.net.estimate.BayesNetEstimator=weka.gui.GenericObjectEditor +weka.classifiers.evaluation.output.prediction.AbstractOutput=weka.gui.GenericObjectEditor +weka.classifiers.functions.supportVector.Kernel=weka.gui.GenericObjectEditor +weka.classifiers.functions.supportVector.RegOptimizer=weka.gui.GenericObjectEditor +#weka.classifiers.meta.generators.Generator=weka.gui.GenericObjectEditor +#weka.classifiers.meta.ensembleSelection.EnsembleSelectionLibrary=weka.gui.EnsembleSelectionLibraryEditor + +# experiment +weka.experiment.ResultListener=weka.gui.GenericObjectEditor +weka.experiment.ResultProducer=weka.gui.GenericObjectEditor +weka.experiment.SplitEvaluator=weka.gui.GenericObjectEditor +weka.experiment.ResultMatrix=weka.gui.GenericObjectEditor +weka.experiment.Tester=weka.gui.GenericObjectEditor + +# datagenerators +weka.datagenerators.DataGenerator=weka.gui.GenericObjectEditor +weka.datagenerators.ClusterDefinition=weka.gui.GenericObjectEditor +weka.datagenerators.ClusterDefinition[]=weka.gui.GenericArrayEditor + +# associations +weka.associations.Associator=weka.gui.GenericObjectEditor + +# clusterers +weka.clusterers.Clusterer=weka.gui.GenericObjectEditor +weka.clusterers.DensityBasedClusterer=weka.gui.GenericObjectEditor + +# attribute selection +weka.attributeSelection.ASEvaluation=weka.gui.GenericObjectEditor +weka.attributeSelection.ASSearch=weka.gui.GenericObjectEditor +weka.attributeSelection.UnsupervisedSubsetEvaluator=weka.gui.GenericObjectEditor + +# partition generators +weka.core.PartitionGenerator=weka.gui.GenericObjectEditor + +#generators +#weka.classifiers.meta.generators.NominalAttributeGenerator=weka.gui.GenericObjectEditor +#weka.classifiers.meta.generators.NumericAttributeGenerator=weka.gui.GenericObjectEditor diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$1.class b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$1.class new file mode 100644 index 00000000..eea84c35 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$1.class b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$1.class new file mode 100644 index 00000000..3a7f39bc Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$2.class b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$2.class new file mode 100644 index 00000000..1602dfe7 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$2.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$3.class b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$3.class new file mode 100644 index 00000000..2a7ce931 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$3.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$4.class b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$4.class new file mode 100644 index 00000000..fd6d5a10 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$4.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$EditorListCellRenderer$1.class b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$EditorListCellRenderer$1.class new file mode 100644 index 00000000..94fba04d Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$EditorListCellRenderer$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$EditorListCellRenderer.class b/workflow/apps/java/clustering/bin/weka/gui/GenericArrayEditor$CustomEditor$EditorListCellRenderer.class new file mode 100644 index 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mode 100644 index 00000000..029f1859 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditor$JTreePopupMenu.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditor.class b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditor.class new file mode 100644 index 00000000..905c2a2f Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditor.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditor.props b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditor.props new file mode 100644 index 00000000..fcfa9ecc --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditor.props @@ -0,0 +1,567 @@ +# Customises the list of options given by the GenericObjectEditor +# +# Thu Jun 19 02:47:27 GMT 2008 + +# Lists the SearchAlgorithms I want to choose from +weka.classifiers.bayes.net.search.SearchAlgorithm=\ + weka.classifiers.bayes.net.search.local.GeneticSearch,\ + weka.classifiers.bayes.net.search.local.HillClimber,\ + weka.classifiers.bayes.net.search.local.K2,\ + weka.classifiers.bayes.net.search.local.LAGDHillClimber,\ + weka.classifiers.bayes.net.search.local.RepeatedHillClimber,\ + weka.classifiers.bayes.net.search.local.SimulatedAnnealing,\ + weka.classifiers.bayes.net.search.local.TabuSearch,\ + weka.classifiers.bayes.net.search.local.TAN,\ + weka.classifiers.bayes.net.search.ci.CISearchAlgorithm,\ + weka.classifiers.bayes.net.search.ci.ICSSearchAlgorithm,\ + weka.classifiers.bayes.net.search.global.GeneticSearch,\ + weka.classifiers.bayes.net.search.global.HillClimber,\ + weka.classifiers.bayes.net.search.global.K2,\ + weka.classifiers.bayes.net.search.global.RepeatedHillClimber,\ + weka.classifiers.bayes.net.search.global.SimulatedAnnealing,\ + weka.classifiers.bayes.net.search.global.TabuSearch,\ + weka.classifiers.bayes.net.search.global.TAN,\ + weka.classifiers.bayes.net.search.fixed.FromFile,\ + weka.classifiers.bayes.net.search.fixed.NaiveBayes + +# Lists the ResultListeners I want to choose from +weka.experiment.ResultListener=\ + weka.experiment.CSVResultListener,\ + weka.experiment.DatabaseResultListener,\ + weka.experiment.InstancesResultListener + +# Lists the Savers I want to choose from +weka.core.converters.Saver=\ + weka.core.converters.ArffSaver,\ + weka.core.converters.C45Saver,\ + weka.core.converters.CSVSaver,\ + weka.core.converters.DatabaseSaver,\ + weka.core.converters.LibSVMSaver,\ + weka.core.converters.MatlabSaver,\ + weka.core.converters.SerializedInstancesSaver,\ + weka.core.converters.XRFFSaver + +# Lists the NearestNeighbourSearchs I want to choose from +weka.core.neighboursearch.NearestNeighbourSearch=\ + weka.core.neighboursearch.BallTree,\ + weka.core.neighboursearch.CoverTree,\ + weka.core.neighboursearch.KDTree,\ + weka.core.neighboursearch.LinearNNSearch + +# Lists the ResultMatrixs I want to choose from +weka.experiment.ResultMatrix=\ + weka.experiment.ResultMatrixCSV,\ + weka.experiment.ResultMatrixGnuPlot,\ + weka.experiment.ResultMatrixHTML,\ + weka.experiment.ResultMatrixLatex,\ + weka.experiment.ResultMatrixPlainText,\ + weka.experiment.ResultMatrixSignificance + +# Lists the ClusterDefinitions I want to choose from +weka.datagenerators.ClusterDefinition=\ + weka.datagenerators.clusterers.SubspaceClusterDefinition + +# Lists the BallTreeConstructors I want to choose from +weka.core.neighboursearch.balltrees.BallTreeConstructor=\ + weka.core.neighboursearch.balltrees.BottomUpConstructor,\ + weka.core.neighboursearch.balltrees.MiddleOutConstructor,\ + weka.core.neighboursearch.balltrees.TopDownConstructor + +# Lists the ASEvaluations I want to choose from +weka.attributeSelection.ASEvaluation=\ + weka.attributeSelection.CfsSubsetEval,\ + weka.attributeSelection.ChiSquaredAttributeEval,\ + weka.attributeSelection.ClassifierSubsetEval,\ + weka.attributeSelection.ConsistencySubsetEval,\ + weka.attributeSelection.CostSensitiveAttributeEval,\ + weka.attributeSelection.CostSensitiveSubsetEval,\ + weka.attributeSelection.FilteredAttributeEval,\ + weka.attributeSelection.FilteredSubsetEval,\ + weka.attributeSelection.GainRatioAttributeEval,\ + weka.attributeSelection.InfoGainAttributeEval,\ + weka.attributeSelection.LatentSemanticAnalysis,\ + weka.attributeSelection.OneRAttributeEval,\ + weka.attributeSelection.PrincipalComponents,\ + weka.attributeSelection.ReliefFAttributeEval,\ + weka.attributeSelection.SVMAttributeEval,\ + weka.attributeSelection.SignificanceAttributeEval,\ + weka.attributeSelection.SymmetricalUncertAttributeEval,\ + weka.attributeSelection.SymmetricalUncertAttributeSetEval,\ + weka.attributeSelection.WrapperSubsetEval + +# Lists the VisualizePlugins I want to choose from +weka.gui.visualize.plugins.VisualizePlugin=\ + + +# Lists the TreeVisualizePlugins I want to choose from +weka.gui.visualize.plugins.TreeVisualizePlugin=\ + + +# Lists the GraphVisualizePlugins I want to choose from +weka.gui.visualize.plugins.GraphVisualizePlugin=\ + + +# Lists the ErrorVisualizePlugins I want to choose from +weka.gui.visualize.plugins.ErrorVisualizePlugin=\ + + +# Lists the Loaders I want to choose from +weka.core.converters.Loader=\ + weka.core.converters.ArffLoader,\ + weka.core.converters.C45Loader,\ + weka.core.converters.CSVLoader,\ + weka.core.converters.DatabaseLoader,\ + weka.core.converters.LibSVMLoader,\ + weka.core.converters.MatlabLoader,\ + weka.core.converters.SerializedInstancesLoader,\ + weka.core.converters.TextDirectoryLoader,\ + weka.core.converters.XRFFLoader + +# Lists the Tokenizers I want to choose from +weka.core.tokenizers.Tokenizer=\ + weka.core.tokenizers.AlphabeticTokenizer,\ + weka.core.tokenizers.NGramTokenizer,\ + weka.core.tokenizers.WordTokenizer + +# Lists the Classifiers I want to choose from +weka.classifiers.Classifier=\ + weka.classifiers.bayes.AODE,\ + weka.classifiers.bayes.AODEsr,\ + weka.classifiers.bayes.BayesianLogisticRegression,\ + weka.classifiers.bayes.BayesNet,\ + weka.classifiers.bayes.ComplementNaiveBayes,\ + weka.classifiers.bayes.DMNBtext,\ + weka.classifiers.bayes.HNB,\ + weka.classifiers.bayes.NaiveBayes,\ + weka.classifiers.bayes.NaiveBayesMultinomial,\ + weka.classifiers.bayes.NaiveBayesMultinomialUpdateable,\ + weka.classifiers.bayes.NaiveBayesSimple,\ + weka.classifiers.bayes.NaiveBayesUpdateable,\ + weka.classifiers.bayes.WAODE,\ + weka.classifiers.functions.GaussianProcesses,\ + weka.classifiers.functions.IsotonicRegression,\ + weka.classifiers.functions.LeastMedSq,\ + weka.classifiers.functions.LibLINEAR,\ + weka.classifiers.functions.LibSVM,\ + weka.classifiers.functions.LinearRegression,\ + weka.classifiers.functions.Logistic,\ + weka.classifiers.functions.MultilayerPerceptron,\ + weka.classifiers.functions.PaceRegression,\ + weka.classifiers.functions.PLSClassifier,\ + weka.classifiers.functions.RBFNetwork,\ + weka.classifiers.functions.SimpleLinearRegression,\ + weka.classifiers.functions.SimpleLogistic,\ + weka.classifiers.functions.SMO,\ + weka.classifiers.functions.SMOreg,\ + weka.classifiers.functions.VotedPerceptron,\ + weka.classifiers.functions.Winnow,\ + weka.classifiers.lazy.IB1,\ + weka.classifiers.lazy.IBk,\ + weka.classifiers.lazy.KStar,\ + weka.classifiers.lazy.LBR,\ + weka.classifiers.lazy.LWL,\ + weka.classifiers.meta.AdaBoostM1,\ + weka.classifiers.meta.AdditiveRegression,\ + weka.classifiers.meta.AttributeSelectedClassifier,\ + weka.classifiers.meta.Bagging,\ + weka.classifiers.meta.ClassificationViaClustering,\ + weka.classifiers.meta.ClassificationViaRegression,\ + weka.classifiers.meta.CostSensitiveClassifier,\ + weka.classifiers.meta.CVParameterSelection,\ + weka.classifiers.meta.Dagging,\ + weka.classifiers.meta.Decorate,\ + weka.classifiers.meta.END,\ + weka.classifiers.meta.EnsembleSelection,\ + weka.classifiers.meta.FilteredClassifier,\ + weka.classifiers.meta.Grading,\ + weka.classifiers.meta.GridSearch,\ + weka.classifiers.meta.LogitBoost,\ + weka.classifiers.meta.MetaCost,\ + weka.classifiers.meta.MultiBoostAB,\ + weka.classifiers.meta.MultiClassClassifier,\ + weka.classifiers.meta.MultiScheme,\ + weka.classifiers.meta.OrdinalClassClassifier,\ + weka.classifiers.meta.RacedIncrementalLogitBoost,\ + weka.classifiers.meta.RandomCommittee,\ + weka.classifiers.meta.RandomSubSpace,\ + weka.classifiers.meta.RegressionByDiscretization,\ + weka.classifiers.meta.RotationForest,\ + weka.classifiers.meta.Stacking,\ + weka.classifiers.meta.StackingC,\ + weka.classifiers.meta.ThresholdSelector,\ + weka.classifiers.meta.Vote,\ + weka.classifiers.meta.nestedDichotomies.ClassBalancedND,\ + weka.classifiers.meta.nestedDichotomies.DataNearBalancedND,\ + weka.classifiers.meta.nestedDichotomies.ND,\ + weka.classifiers.mi.CitationKNN,\ + weka.classifiers.mi.MDD,\ + weka.classifiers.mi.MIBoost,\ + weka.classifiers.mi.MIDD,\ + weka.classifiers.mi.MIEMDD,\ + weka.classifiers.mi.MILR,\ + weka.classifiers.mi.MINND,\ + weka.classifiers.mi.MIOptimalBall,\ + weka.classifiers.mi.MISMO,\ + weka.classifiers.mi.MISVM,\ + weka.classifiers.mi.MIWrapper,\ + weka.classifiers.mi.SimpleMI,\ + weka.classifiers.mi.TLD,\ + weka.classifiers.mi.TLDSimple,\ + weka.classifiers.misc.FLR,\ + weka.classifiers.misc.HyperPipes,\ + weka.classifiers.misc.OSDL,\ + weka.classifiers.misc.SerializedClassifier,\ + weka.classifiers.misc.VFI,\ + weka.classifiers.scripting.GroovyClassifier,\ + weka.classifiers.scripting.JythonClassifier,\ + weka.classifiers.trees.ADTree,\ + weka.classifiers.trees.BFTree,\ + weka.classifiers.trees.DecisionStump,\ + weka.classifiers.trees.FT,\ + weka.classifiers.trees.Id3,\ + weka.classifiers.trees.J48,\ + weka.classifiers.trees.J48graft,\ + weka.classifiers.trees.LADTree,\ + weka.classifiers.trees.LMT,\ + weka.classifiers.trees.M5P,\ + weka.classifiers.trees.NBTree,\ + weka.classifiers.trees.RandomForest,\ + weka.classifiers.trees.RandomTree,\ + weka.classifiers.trees.REPTree,\ + weka.classifiers.trees.SimpleCart,\ + weka.classifiers.trees.UserClassifier,\ + weka.classifiers.rules.ConjunctiveRule,\ + weka.classifiers.rules.DecisionTable,\ + weka.classifiers.rules.DTNB,\ + weka.classifiers.rules.JRip,\ + weka.classifiers.rules.M5Rules,\ + weka.classifiers.rules.NNge,\ + weka.classifiers.rules.OLM,\ + weka.classifiers.rules.OneR,\ + weka.classifiers.rules.PART,\ + weka.classifiers.rules.Prism,\ + weka.classifiers.rules.Ridor,\ + weka.classifiers.rules.ZeroR + +# Lists the AbstractOutput classes I want to choose from +weka.classifiers.evaluation.output.prediction.AbstractOutput=\ + weka.classifiers.evaluation.output.prediction.CSV,\ + weka.classifiers.evaluation.output.prediction.HTML,\ + weka.classifiers.evaluation.output.prediction.Null,\ + weka.classifiers.evaluation.output.prediction.PlainText + +# Lists the DistanceFunctions I want to choose from +weka.core.DistanceFunction=\ + weka.core.ChebyshevDistance,\ + weka.core.EditDistance,\ + weka.core.EuclideanDistance,\ + weka.core.ManhattanDistance + +# Lists the Clusterers I want to choose from +weka.clusterers.Clusterer=\ + weka.clusterers.CLOPE,\ + weka.clusterers.Cobweb,\ + weka.clusterers.DBScan,\ + weka.clusterers.EM,\ + weka.clusterers.FarthestFirst,\ + weka.clusterers.FilteredClusterer,\ + weka.clusterers.MakeDensityBasedClusterer,\ + weka.clusterers.OPTICS,\ + weka.clusterers.sIB,\ + weka.clusterers.SimpleKMeans,\ + weka.clusterers.XMeans + +# Lists the UnsupervisedFilters I want to choose from +weka.filters.UnsupervisedFilter=\ + weka.filters.unsupervised.attribute.Add,\ + weka.filters.unsupervised.attribute.AddCluster,\ + weka.filters.unsupervised.attribute.AddExpression,\ + weka.filters.unsupervised.attribute.AddID,\ + weka.filters.unsupervised.attribute.AddNoise,\ + weka.filters.unsupervised.attribute.AddValues,\ + weka.filters.unsupervised.attribute.Center,\ + weka.filters.unsupervised.attribute.ChangeDateFormat,\ + weka.filters.unsupervised.attribute.ClusterMembership,\ + weka.filters.unsupervised.attribute.Copy,\ + weka.filters.unsupervised.attribute.Discretize,\ + weka.filters.unsupervised.attribute.EMImputation,\ + weka.filters.unsupervised.attribute.FirstOrder,\ + weka.filters.unsupervised.attribute.KernelFilter,\ + weka.filters.unsupervised.attribute.MakeIndicator,\ + weka.filters.unsupervised.attribute.MathExpression,\ + weka.filters.unsupervised.attribute.MergeTwoValues,\ + weka.filters.unsupervised.attribute.MultiInstanceToPropositional,\ + weka.filters.unsupervised.attribute.NominalToBinary,\ + weka.filters.unsupervised.attribute.NominalToString,\ + weka.filters.unsupervised.attribute.Normalize,\ + weka.filters.unsupervised.attribute.NumericToBinary,\ + weka.filters.unsupervised.attribute.NumericTransform,\ + weka.filters.unsupervised.attribute.Obfuscate,\ + weka.filters.unsupervised.attribute.PKIDiscretize,\ + weka.filters.unsupervised.attribute.PrincipalComponents,\ + weka.filters.unsupervised.attribute.PropositionalToMultiInstance,\ + weka.filters.unsupervised.attribute.RandomProjection,\ + weka.filters.unsupervised.attribute.Remove,\ + weka.filters.unsupervised.attribute.RemoveType,\ + weka.filters.unsupervised.attribute.RemoveUseless,\ + weka.filters.unsupervised.attribute.Reorder,\ + weka.filters.unsupervised.attribute.ReplaceMissingValues,\ + weka.filters.unsupervised.attribute.Standardize,\ + weka.filters.unsupervised.attribute.StringToNominal,\ + weka.filters.unsupervised.attribute.StringToWordVector,\ + weka.filters.unsupervised.attribute.SwapValues,\ + weka.filters.unsupervised.attribute.TimeSeriesDelta,\ + weka.filters.unsupervised.attribute.TimeSeriesTranslate,\ + weka.filters.unsupervised.attribute.Wavelet,\ + weka.filters.unsupervised.instance.NonSparseToSparse,\ + weka.filters.unsupervised.instance.Normalize,\ + weka.filters.unsupervised.instance.Randomize,\ + weka.filters.unsupervised.instance.RemoveFolds,\ + weka.filters.unsupervised.instance.RemoveFrequentValues,\ + weka.filters.unsupervised.instance.RemoveMisclassified,\ + weka.filters.unsupervised.instance.RemovePercentage,\ + weka.filters.unsupervised.instance.RemoveRange,\ + weka.filters.unsupervised.instance.RemoveWithValues,\ + weka.filters.unsupervised.instance.Resample,\ + weka.filters.unsupervised.instance.ReservoirSample,\ + weka.filters.unsupervised.instance.SparseToNonSparse,\ + weka.filters.unsupervised.instance.SubsetByExpression + +# Lists the RegOptimizers I want to choose from +weka.classifiers.functions.supportVector.RegOptimizer=\ + weka.classifiers.functions.supportVector.RegSMO,\ + weka.classifiers.functions.supportVector.RegSMOImproved + +# Lists the JComponentWriters I want to choose from +weka.gui.visualize.JComponentWriter=\ + weka.gui.visualize.BMPWriter,\ + weka.gui.visualize.JPEGWriter,\ + weka.gui.visualize.PNGWriter,\ + weka.gui.visualize.PostscriptWriter + +# Lists the Stemmers I want to choose from +weka.core.stemmers.Stemmer=\ + weka.core.stemmers.IteratedLovinsStemmer,\ + weka.core.stemmers.LovinsStemmer,\ + weka.core.stemmers.NullStemmer,\ + weka.core.stemmers.SnowballStemmer + +# Lists the Kernels I want to choose from +weka.classifiers.functions.supportVector.Kernel=\ + weka.classifiers.functions.supportVector.NormalizedPolyKernel,\ + weka.classifiers.functions.supportVector.PolyKernel,\ + weka.classifiers.functions.supportVector.PrecomputedKernelMatrixKernel,\ + weka.classifiers.functions.supportVector.Puk,\ + weka.classifiers.functions.supportVector.RBFKernel,\ + weka.classifiers.functions.supportVector.StringKernel,\ + weka.classifiers.mi.supportVector.MIPolyKernel,\ + weka.classifiers.mi.supportVector.MIRBFKernel + +# Lists the Testers I want to choose from +weka.experiment.Tester=\ + weka.experiment.PairedCorrectedTTester,\ + weka.experiment.PairedTTester + +# Lists the ASSearchs I want to choose from +weka.attributeSelection.ASSearch=\ + weka.attributeSelection.BestFirst,\ + weka.attributeSelection.ExhaustiveSearch,\ + weka.attributeSelection.FCBFSearch,\ + weka.attributeSelection.GeneticSearch,\ + weka.attributeSelection.GreedyStepwise,\ + weka.attributeSelection.LinearForwardSelection,\ + weka.attributeSelection.RaceSearch,\ + weka.attributeSelection.RandomSearch,\ + weka.attributeSelection.Ranker,\ + weka.attributeSelection.RankSearch,\ + weka.attributeSelection.ScatterSearchV1,\ + weka.attributeSelection.SubsetSizeForwardSelection + +# Lists the SplitEvaluators I want to choose from +weka.experiment.SplitEvaluator=\ + weka.experiment.ClassifierSplitEvaluator,\ + weka.experiment.CostSensitiveClassifierSplitEvaluator,\ + weka.experiment.DensityBasedClustererSplitEvaluator,\ + weka.experiment.RegressionSplitEvaluator + +# Lists the DataGenerators I want to choose from +weka.datagenerators.DataGenerator=\ + weka.datagenerators.classifiers.classification.Agrawal,\ + weka.datagenerators.classifiers.classification.BayesNet,\ + weka.datagenerators.classifiers.classification.LED24,\ + weka.datagenerators.classifiers.classification.RandomRBF,\ + weka.datagenerators.classifiers.classification.RDG1,\ + weka.datagenerators.classifiers.regression.Expression,\ + weka.datagenerators.classifiers.regression.MexicanHat,\ + weka.datagenerators.clusterers.BIRCHCluster,\ + weka.datagenerators.clusterers.SubspaceCluster + +# Lists the AbstractFileLoaders I want to choose from +weka.core.converters.AbstractFileLoader=\ + weka.core.converters.ArffLoader,\ + weka.core.converters.C45Loader,\ + weka.core.converters.CSVLoader,\ + weka.core.converters.LibSVMLoader,\ + weka.core.converters.MatlabLoader,\ + weka.core.converters.SerializedInstancesLoader,\ + weka.core.converters.XRFFLoader + +# Lists the AbstractFileSavers I want to choose from +weka.core.converters.AbstractFileSaver=\ + weka.core.converters.ArffSaver,\ + weka.core.converters.C45Saver,\ + weka.core.converters.CSVSaver,\ + weka.core.converters.LibSVMSaver,\ + weka.core.converters.MatlabSaver,\ + weka.core.converters.SerializedInstancesSaver,\ + weka.core.converters.XRFFSaver + +# Lists the BayesNetEstimators I want to choose from +weka.classifiers.bayes.net.estimate.BayesNetEstimator=\ + weka.classifiers.bayes.net.estimate.BayesNetEstimator,\ + weka.classifiers.bayes.net.estimate.BMAEstimator,\ + weka.classifiers.bayes.net.estimate.MultiNomialBMAEstimator,\ + weka.classifiers.bayes.net.estimate.SimpleEstimator + +# Lists the MainMenuExtensions I want to choose from +weka.gui.MainMenuExtension=\ + + +# Lists the KDTreeNodeSplitters I want to choose from +weka.core.neighboursearch.kdtrees.KDTreeNodeSplitter=\ + weka.core.neighboursearch.kdtrees.KMeansInpiredMethod,\ + weka.core.neighboursearch.kdtrees.MedianOfWidestDimension,\ + weka.core.neighboursearch.kdtrees.MidPointOfWidestDimension,\ + weka.core.neighboursearch.kdtrees.SlidingMidPointOfWidestSide + +# Lists the Associators I want to choose from +weka.associations.Associator=\ + weka.associations.Apriori,\ + weka.associations.FilteredAssociator,\ + weka.associations.GeneralizedSequentialPatterns,\ + weka.associations.HotSpot,\ + weka.associations.PredictiveApriori,\ + weka.associations.Tertius + +# Lists the ResultProducers I want to choose from +weka.experiment.ResultProducer=\ + weka.experiment.AveragingResultProducer,\ + weka.experiment.CrossValidationResultProducer,\ + weka.experiment.DatabaseResultProducer,\ + weka.experiment.LearningRateResultProducer,\ + weka.experiment.RandomSplitResultProducer + +# Lists the DensityBasedClusterers I want to choose from +weka.clusterers.DensityBasedClusterer=\ + weka.clusterers.EM,\ + weka.clusterers.MakeDensityBasedClusterer + +# Lists the Filters I want to choose from +weka.filters.Filter=\ + weka.filters.AllFilter,\ + weka.filters.MultiFilter,\ + weka.filters.supervised.attribute.AddClassification,\ + weka.filters.supervised.attribute.AttributeSelection,\ + weka.filters.supervised.attribute.ClassOrder,\ + weka.filters.supervised.attribute.Discretize,\ + weka.filters.supervised.attribute.NominalToBinary,\ + weka.filters.supervised.attribute.PLSFilter,\ + weka.filters.supervised.instance.Resample,\ + weka.filters.supervised.instance.SpreadSubsample,\ + weka.filters.supervised.instance.StratifiedRemoveFolds,\ + weka.filters.supervised.instance.SMOTE,\ + weka.filters.unsupervised.attribute.Add,\ + weka.filters.unsupervised.attribute.AddCluster,\ + weka.filters.unsupervised.attribute.AddExpression,\ + weka.filters.unsupervised.attribute.AddID,\ + weka.filters.unsupervised.attribute.AddNoise,\ + weka.filters.unsupervised.attribute.AddValues,\ + weka.filters.unsupervised.attribute.Center,\ + weka.filters.unsupervised.attribute.ChangeDateFormat,\ + weka.filters.unsupervised.attribute.ClassAssigner,\ + weka.filters.unsupervised.attribute.ClusterMembership,\ + weka.filters.unsupervised.attribute.Copy,\ + weka.filters.unsupervised.attribute.Discretize,\ + weka.filters.unsupervised.attribute.EMImputation,\ + weka.filters.unsupervised.attribute.FirstOrder,\ + weka.filters.unsupervised.attribute.InterquartileRange,\ + weka.filters.unsupervised.attribute.KernelFilter,\ + weka.filters.unsupervised.attribute.MakeIndicator,\ + weka.filters.unsupervised.attribute.MathExpression,\ + weka.filters.unsupervised.attribute.MergeTwoValues,\ + weka.filters.unsupervised.attribute.MultiInstanceToPropositional,\ + weka.filters.unsupervised.attribute.NominalToBinary,\ + weka.filters.unsupervised.attribute.NominalToString,\ + weka.filters.unsupervised.attribute.Normalize,\ + weka.filters.unsupervised.attribute.NumericCleaner,\ + weka.filters.unsupervised.attribute.NumericToBinary,\ + weka.filters.unsupervised.attribute.NumericToNominal,\ + weka.filters.unsupervised.attribute.NumericTransform,\ + weka.filters.unsupervised.attribute.Obfuscate,\ + weka.filters.unsupervised.attribute.PartitionedMultiFilter,\ + weka.filters.unsupervised.attribute.PKIDiscretize,\ + weka.filters.unsupervised.attribute.PrincipalComponents,\ + weka.filters.unsupervised.attribute.PropositionalToMultiInstance,\ + weka.filters.unsupervised.attribute.RandomProjection,\ + weka.filters.unsupervised.attribute.RandomSubset,\ + weka.filters.unsupervised.attribute.RELAGGS,\ + weka.filters.unsupervised.attribute.Remove,\ + weka.filters.unsupervised.attribute.RemoveType,\ + weka.filters.unsupervised.attribute.RemoveUseless,\ + weka.filters.unsupervised.attribute.Reorder,\ + weka.filters.unsupervised.attribute.ReplaceMissingValues,\ + weka.filters.unsupervised.attribute.Standardize,\ + weka.filters.unsupervised.attribute.StringToNominal,\ + weka.filters.unsupervised.attribute.StringToWordVector,\ + weka.filters.unsupervised.attribute.SwapValues,\ + weka.filters.unsupervised.attribute.TimeSeriesDelta,\ + weka.filters.unsupervised.attribute.TimeSeriesTranslate,\ + weka.filters.unsupervised.attribute.Wavelet,\ + weka.filters.unsupervised.instance.NonSparseToSparse,\ + weka.filters.unsupervised.instance.Normalize,\ + weka.filters.unsupervised.instance.Randomize,\ + weka.filters.unsupervised.instance.RemoveFolds,\ + weka.filters.unsupervised.instance.RemoveFrequentValues,\ + weka.filters.unsupervised.instance.RemoveMisclassified,\ + weka.filters.unsupervised.instance.RemovePercentage,\ + weka.filters.unsupervised.instance.RemoveRange,\ + weka.filters.unsupervised.instance.RemoveWithValues,\ + weka.filters.unsupervised.instance.Resample,\ + weka.filters.unsupervised.instance.ReservoirSample,\ + weka.filters.unsupervised.instance.SparseToNonSparse,\ + weka.filters.unsupervised.instance.SubsetByExpression + +# Lists the Estimators I want to choose from +weka.estimators.Estimator=\ + weka.estimators.DiscreteEstimator,\ + weka.estimators.KernelEstimator,\ + weka.estimators.MahalanobisEstimator,\ + weka.estimators.NormalEstimator,\ + weka.estimators.PoissonEstimator + +# Lists the Univariate Density Estimators I want to choose from +weka.estimators.UnivariateDensityEstimator= \ + weka.estimators.UnivariateNormalEstimator,\ + weka.estimators.UnivariateKernelDensityEstimator,\ + weka.estimators.UnivariateEqualFrequencyHistogramEstimator,\ + weka.estimators.UnivariateMixtureEstimator + +# Lists the BallSplitters I want to choose from +weka.core.neighboursearch.balltrees.BallSplitter=\ + weka.core.neighboursearch.balltrees.MedianDistanceFromArbitraryPoint,\ + weka.core.neighboursearch.balltrees.MedianOfWidestDimension,\ + weka.core.neighboursearch.balltrees.PointsClosestToFurthestChildren + +# Lists the partition generators I want to choose from +weka.core.PartitionGenerator=\ + weka.classifiers.trees.J48,\ + weka.classifiers.meta.FilteredClassifier + +# stopword algorithms +weka.core.stopwords.StopwordsHandler=\ + weka.core.stopwords.MultiStopwords,\ + weka.core.stopwords.Null,\ + weka.core.stopwords.Rainbow,\ + weka.core.stopwords.RegExpFromFile,\ + weka.core.stopwords.WordsFromFile + diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory$1.class b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory$1.class new file mode 100644 index 00000000..01d8b56e Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory$2.class b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory$2.class new file mode 100644 index 00000000..8546bded Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory$2.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory$HistorySelectionEvent.class b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory$HistorySelectionEvent.class new file mode 100644 index 00000000..976d58b9 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory$HistorySelectionEvent.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory$HistorySelectionListener.class b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory$HistorySelectionListener.class new file mode 100644 index 00000000..22da8334 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory$HistorySelectionListener.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory.class b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory.class new file mode 100644 index 00000000..597a97c8 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericObjectEditorHistory.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericPropertiesCreator.class b/workflow/apps/java/clustering/bin/weka/gui/GenericPropertiesCreator.class new file mode 100644 index 00000000..18971d33 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/GenericPropertiesCreator.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericPropertiesCreator.excludes b/workflow/apps/java/clustering/bin/weka/gui/GenericPropertiesCreator.excludes new file mode 100644 index 00000000..b226642e --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/GenericPropertiesCreator.excludes @@ -0,0 +1,31 @@ +# Corresponds to GenericPropertiesCreator.props, but lists classes +# that shouldn't appear in the GUI. +# +# Format: +# =:[,:] +# +# the key from GenericPropertiesCreator.props (class or interface) +# S ("Superclass"): any class derived from this one will be +# excluded +# I ("Interface"): any class implementing this interface will be +# excluded +# C ("Class"): exactly this class will be excluded +# the classname +# +# Author : fracpete (fracpete at waikato dot ac dot nz) +# Version: $Revision: 8034 $ + +# ResultListeners +weka.experiment.ResultListener=\ + I:weka.experiment.ResultProducer + +# Search algorithms of the Bayes net package +weka.classifiers.bayes.net.search.SearchAlgorithm=\ + C:weka.classifiers.bayes.net.search.local.LocalScoreSearchAlgorithm,\ + C:weka.classifiers.bayes.net.search.global.GlobalScoreSearchAlgorithm,\ + C:weka.classifiers.bayes.net.search.ci.CIScoreSearchAlgorithm + +# SVMreg learning algorithms +weka.classifiers.functions.supportVector.RegOptimizer=\ + C:weka.classifiers.functions.supportVector.RegOptimizer + diff --git a/workflow/apps/java/clustering/bin/weka/gui/GenericPropertiesCreator.props b/workflow/apps/java/clustering/bin/weka/gui/GenericPropertiesCreator.props new file mode 100644 index 00000000..2488f2d9 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/GenericPropertiesCreator.props @@ -0,0 +1,231 @@ +# Customises the list of options given by the GenericObjectEditor +# for various superclasses. +# +# Version: $Revision: 15255 $ + +# Whether to use the dynamic approach or not (true|false). In case of +# "false" the old GenericObjectEditor.props file is used: +UseDynamic=true + +# Lists the ResultProducers-Packages I want to choose from +weka.experiment.ResultProducer=\ + weka.experiment + +# Lists the ResultListeners-Packages I want to choose from +weka.experiment.ResultListener=\ + weka.experiment + +# Lists the SplitEvaluators-Packages I want to choose from +weka.experiment.SplitEvaluator=\ + weka.experiment + +# Lists the Classifiers-Packages I want to choose from +weka.classifiers.Classifier=\ + weka.classifiers.bayes,\ + weka.classifiers.functions,\ + weka.classifiers.lazy,\ + weka.classifiers.meta,\ + weka.classifiers.meta.nestedDichotomies,\ + weka.classifiers.mi,\ + weka.classifiers.misc,\ + weka.classifiers.scripting,\ + weka.classifiers.trees,\ + weka.classifiers.rules + +# Lists the IterativeClassifier objects I want to choose from +weka.classifiers.IterativeClassifier=\ + weka.classifiers.functions,\ + weka.classifiers.meta,\ + weka.classifiers.trees + +# Lists the AbstractClassificationOutput-packages I want to choose from +weka.classifiers.evaluation.output.prediction.AbstractOutput=\ + weka.classifiers.evaluation.output.prediction + +# Lists the Filters-Packages I want to choose from +weka.filters.Filter= \ + weka.filters, \ + weka.filters.supervised.attribute, \ + weka.filters.supervised.instance, \ + weka.filters.unsupervised.attribute, \ + weka.filters.unsupervised.instance + +# Lists the UnsupervisedFilters-Packages I want to choose from +weka.filters.UnsupervisedFilter = \ + weka.filters.unsupervised.attribute, \ + weka.filters.unsupervised.instance + +# Lists the Attribute Selection Evaluators-Packages I want to choose from +weka.attributeSelection.ASEvaluation = \ + weka.attributeSelection + +# Lists the Attribute Selection Search methods-Packages I want to choose from +weka.attributeSelection.ASSearch = \ + weka.attributeSelection + +# Lists the Associators-Packages I want to choose from +weka.associations.Associator=\ + weka.associations + +# Lists the Clusterers-Packages I want to choose from +weka.clusterers.Clusterer=\ + weka.clusterers + +# Lists the DensityBasedClusterers I want to choose from +weka.clusterers.DensityBasedClusterer=\ + weka.clusterers + +# Lists the Loaders-Packages I want to choose from +weka.core.converters.Loader=\ + weka.core.converters + +# Lists the Savers-Packages I want to choose from +weka.core.converters.Saver=\ + weka.core.converters + +# Lists the search algorithms for nearest neighbour search +weka.core.neighboursearch.NearestNeighbourSearch =\ + weka.core.neighboursearch + +# Lists the ball tree constructors +weka.core.neighboursearch.balltrees.BallTreeConstructor =\ + weka.core.neighboursearch.balltrees + +# Lists the ball splitters +weka.core.neighboursearch.balltrees.BallSplitter =\ + weka.core.neighboursearch.balltrees + +# Lists the kd tree splitters +weka.core.neighboursearch.kdtrees.KDTreeNodeSplitter =\ + weka.core.neighboursearch.kdtrees + +# Lists the distance functions for use nearest neighbour search +weka.core.DistanceFunction =\ + weka.core + +# Lists the Search algorithm for Bayes net structure learning-Packages I want to choose from +weka.classifiers.bayes.net.search.SearchAlgorithm=\ + weka.classifiers.bayes.net.search.local, \ + weka.classifiers.bayes.net.search.ci, \ + weka.classifiers.bayes.net.search.global, \ + weka.classifiers.bayes.net.search.fixed + +weka.classifiers.bayes.net.estimate.BayesNetEstimator =\ + weka.classifiers.bayes.net.estimate + +# Lists the DataGenerator Algorithms-Packages +weka.datagenerators.DataGenerator=\ + weka.datagenerators.classifiers.classification,\ + weka.datagenerators.classifiers.regression,\ + weka.datagenerators.clusterers + +# Lists the packages where to find ClusterDefinition +weka.datagenerators.ClusterDefinition=\ + weka.datagenerators,\ + weka.datagenerators.clusterers + +# List of stemmers +weka.core.stemmers.Stemmer=\ + weka.core.stemmers + +# Lists the Estimator-Packages I want to choose from +weka.estimators.Estimator= \ + weka.estimators + +# Lists the Univariate Density Estimator packages I want to choose from +weka.estimators.UnivariateDensityEstimator= \ + weka.estimators + +# Lists of Kernels I want to choose from +weka.classifiers.functions.supportVector.Kernel=\ + weka.classifiers.functions.supportVector,\ + weka.classifiers.mi.supportVector + +# List of SVMreg learning algorithms +weka.classifiers.functions.supportVector.RegOptimizer=\ + weka.classifiers.functions.supportVector + +# List of tokenizers +weka.core.tokenizers.Tokenizer=\ + weka.core.tokenizers + +# List of extensions for the main GUI, package "weka.gui" is not allowed +weka.gui.MainMenuExtension= + +# List of Explorer visualization plugins (classification panel) +weka.gui.visualize.plugins.VisualizePlugin=\ + weka.gui.visualize.plugins + +# List of Explorer tree visualization plugins (classification panel) +weka.gui.visualize.plugins.TreeVisualizePlugin=\ + weka.gui.visualize.plugins + +# List of Explorer graph visualization plugins (classification panel) +weka.gui.visualize.plugins.GraphVisualizePlugin=\ + weka.gui.visualize.plugins + +# List of Explorer error visualization plugins (classification panel) +weka.gui.visualize.plugins.ErrorVisualizePlugin=\ + weka.gui.visualize.plugins + +#List of Explorer association rule visualization plugins (associations panel) +weka.gui.visualize.plugins.AssociationRuleVisualizePlugin=\ + weka.gui.visualize.plugins + +#List of Explorer classifier panel launch handler plugins +weka.gui.explorer.ClassifierPanelLaunchHandlerPlugin=\ + weka.gui.explorer + +# List of writers for outputting graphics +weka.gui.visualize.JComponentWriter=\ + weka.gui.visualize + +# List of Experimenter result matrices +weka.experiment.ResultMatrix=\ + weka.experiment + +# List of Tester algorithms in the Experimenter +weka.experiment.Tester=\ + weka.experiment + +# List of Experimenter setup panels +weka.gui.experiment.AbstractSetupPanel=\ + weka.gui.experiment + +# List of file loaders +weka.core.converters.AbstractFileLoader=\ + weka.core.converters + +# List of file savers +weka.core.converters.AbstractFileSaver=\ + weka.core.converters + +# List of partition generators +weka.core.PartitionGenerator=\ + weka.classifiers.trees,\ + weka.classifiers.meta + +# List of snowball stemmers. +# +# Note: the snowball jar needs to be in the CLASSPATH to make these stemmers +# available. +#org.tartarus.snowball.SnowballProgram=\ +# org.tartarus.snowball.ext + +# List of generators +#weka.classifiers.meta.generators.Generator=\ +# weka.classifiers.meta.generators + +#weka.classifiers.meta.generators.NumericAttributeGenerator=\ +# weka.classifiers.meta.generators + +#weka.classifiers.meta.generators.NominalAttributeGenerator=\ +# weka.classifiers.meta.generators + +# stopword algorithms +weka.core.stopwords.StopwordsHandler=\ + weka.core.stopwords + +# the commands for the SimpleCLI +weka.gui.simplecli.AbstractCommand=\ + weka.gui.simplecli diff --git a/workflow/apps/java/clustering/bin/weka/gui/HierarchyPropertyParser$1.class b/workflow/apps/java/clustering/bin/weka/gui/HierarchyPropertyParser$1.class new file mode 100644 index 00000000..44cf164b Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/HierarchyPropertyParser$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/HierarchyPropertyParser$TreeNode.class b/workflow/apps/java/clustering/bin/weka/gui/HierarchyPropertyParser$TreeNode.class new file mode 100644 index 00000000..6b61a600 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/HierarchyPropertyParser$TreeNode.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/HierarchyPropertyParser.class b/workflow/apps/java/clustering/bin/weka/gui/HierarchyPropertyParser.class new file mode 100644 index 00000000..1af09d4a Binary files /dev/null and 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a/workflow/apps/java/clustering/bin/weka/gui/LookAndFeel.class b/workflow/apps/java/clustering/bin/weka/gui/LookAndFeel.class new file mode 100644 index 00000000..985eae89 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/LookAndFeel.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/LookAndFeel.props b/workflow/apps/java/clustering/bin/weka/gui/LookAndFeel.props new file mode 100644 index 00000000..e73e490b --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/LookAndFeel.props @@ -0,0 +1,10 @@ +# Look'n'Feel configuration file +# $Revision: 8034 $ + +# the theme to use, none specified or empty means the system default one +#Theme=javax.swing.plaf.metal.MetalLookAndFeel +#Theme=com.sun.java.swing.plaf.gtk.GTKLookAndFeel +#Theme=com.sun.java.swing.plaf.motif.MotifLookAndFeel +#Theme=com.sun.java.swing.plaf.windows.WindowsLookAndFeel +#Theme=com.sun.java.swing.plaf.windows.WindowsClassicLookAndFeel + diff --git 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a/workflow/apps/java/clustering/bin/weka/gui/Main$BackgroundDesktopPane.class b/workflow/apps/java/clustering/bin/weka/gui/Main$BackgroundDesktopPane.class new file mode 100644 index 00000000..cfe22b0f Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/Main$BackgroundDesktopPane.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/Main$ChildFrameMDI$1.class b/workflow/apps/java/clustering/bin/weka/gui/Main$ChildFrameMDI$1.class new file mode 100644 index 00000000..e3e63ce9 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/Main$ChildFrameMDI$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/Main$ChildFrameMDI.class b/workflow/apps/java/clustering/bin/weka/gui/Main$ChildFrameMDI.class new file mode 100644 index 00000000..3cb7fbe0 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/Main$ChildFrameMDI.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/Main$ChildFrameSDI$1.class b/workflow/apps/java/clustering/bin/weka/gui/Main$ChildFrameSDI$1.class new file mode 100644 index 00000000..a722d4f0 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/Main$ChildFrameSDI$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/Main$ChildFrameSDI.class b/workflow/apps/java/clustering/bin/weka/gui/Main$ChildFrameSDI.class new file mode 100644 index 00000000..c6584a02 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/Main$ChildFrameSDI.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/Main.class b/workflow/apps/java/clustering/bin/weka/gui/Main.class new file mode 100644 index 00000000..92d5b899 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/Main.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/MainMenuExtension.class b/workflow/apps/java/clustering/bin/weka/gui/MainMenuExtension.class new file mode 100644 index 00000000..13ddb1d9 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/MainMenuExtension.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/MemoryUsage.props b/workflow/apps/java/clustering/bin/weka/gui/MemoryUsage.props new file mode 100644 index 00000000..3d669343 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/MemoryUsage.props @@ -0,0 +1,36 @@ +# Properties file for customizing the memory usage panel. +# +# author: FracPete (fracpete at waikato dot ac dot nz) +# version: $Revision: 8034 $ + +# The dimensions of the dialog, width and height. +Width=400 +# Uncomment the following property if you don't want the height to be based on +# the height of the "garbage collector" button. +#Height=20 + +# The position of the frame. If at least one equals "-1", then the position +# will be ignored. +Left=-1 +Top=-1 + +# The background color for the graph. +BackgroundColor=white + +# The refresh interval in milliseconds +Interval=1000 + +# The percentage thresholds at which to change color. comma-separated list. +# Percentages listed here must have a corresponding color entry, i.e., +# if "70" is in the list, then an entry like "70=somecolor" must be listed in +# the properties file as well. +Percentages=70,80,90 + +# The default color, i.e., the color for memory usage below the smallest +# threshold listed in "Percentages". +DefaultColor=green + +# The colors for the thresholds (can use R,G,B format) +70=yellow +80=orange +90=red diff --git a/workflow/apps/java/clustering/bin/weka/gui/MemoryUsagePanel$1.class b/workflow/apps/java/clustering/bin/weka/gui/MemoryUsagePanel$1.class new file mode 100644 index 00000000..c8990684 Binary files /dev/null and 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--git a/workflow/apps/java/clustering/bin/weka/gui/PerspectiveInfo.class b/workflow/apps/java/clustering/bin/weka/gui/PerspectiveInfo.class new file mode 100644 index 00000000..9b1cf8ce Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/PerspectiveInfo.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/PerspectiveManager$1.class b/workflow/apps/java/clustering/bin/weka/gui/PerspectiveManager$1.class new file mode 100644 index 00000000..5e3ef6b3 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/PerspectiveManager$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/PerspectiveManager$2.class b/workflow/apps/java/clustering/bin/weka/gui/PerspectiveManager$2.class new file mode 100644 index 00000000..cf8b3380 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/PerspectiveManager$2.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/PerspectiveManager$3.class 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b/workflow/apps/java/clustering/bin/weka/gui/SimpleCLI$1.class new file mode 100644 index 00000000..97866e8d Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/SimpleCLI$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/SimpleCLI.class b/workflow/apps/java/clustering/bin/weka/gui/SimpleCLI.class new file mode 100644 index 00000000..1f362842 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/SimpleCLI.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/SimpleCLI.props b/workflow/apps/java/clustering/bin/weka/gui/SimpleCLI.props new file mode 100644 index 00000000..dc7b2057 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/SimpleCLI.props @@ -0,0 +1,8 @@ +# Contains properties for the SimpleCLI +# +# Author: FracPete (fracpete at waikato dot ac dot nz) +# Version: $Revision: 8034 $ + +# the maximum number of history commands to save (most recent ones) +HistorySize=50 + diff --git a/workflow/apps/java/clustering/bin/weka/gui/SimpleCLIPanel$1.class b/workflow/apps/java/clustering/bin/weka/gui/SimpleCLIPanel$1.class new file mode 100644 index 00000000..b8699345 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/SimpleCLIPanel$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/SimpleCLIPanel$ClassRunner.class b/workflow/apps/java/clustering/bin/weka/gui/SimpleCLIPanel$ClassRunner.class new file mode 100644 index 00000000..e698776e Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/SimpleCLIPanel$ClassRunner.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/SimpleCLIPanel$CommandlineCompletion.class b/workflow/apps/java/clustering/bin/weka/gui/SimpleCLIPanel$CommandlineCompletion.class new file mode 100644 index 00000000..f3df8e42 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/SimpleCLIPanel$CommandlineCompletion.class differ diff --git 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diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/Beans.props b/workflow/apps/java/clustering/bin/weka/gui/beans/Beans.props new file mode 100644 index 00000000..5d725919 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/beans/Beans.props @@ -0,0 +1,81 @@ +# list of standard toolbars (containing bean tools that do not wrap weka +# base class types) +weka.gui.beans.KnowledgeFlow.standardToolBars=\ + Evaluation,\ + Visualization,\ + Tools,\ + Flow + +# Specifies the tools for each standard toolbar +weka.gui.beans.KnowledgeFlow.Evaluation=weka.gui.beans.TrainingSetMaker,\ + weka.gui.beans.TestSetMaker,\ + weka.gui.beans.CrossValidationFoldMaker,\ + weka.gui.beans.TrainTestSplitMaker,\ + weka.gui.beans.ClassAssigner,\ + weka.gui.beans.ClassValuePicker,\ + weka.gui.beans.ClassifierPerformanceEvaluator,\ + weka.gui.beans.IncrementalClassifierEvaluator,\ + weka.gui.beans.ClustererPerformanceEvaluator,\ + weka.gui.beans.PredictionAppender,\ + weka.gui.beans.SerializedModelSaver,\ + weka.gui.beans.TextSaver + +weka.gui.beans.KnowledgeFlow.Visualization=weka.gui.beans.DataVisualizer,\ + weka.gui.beans.ScatterPlotMatrix,\ + weka.gui.beans.AttributeSummarizer,\ + weka.gui.beans.ModelPerformanceChart,\ + weka.gui.beans.CostBenefitAnalysis,\ + weka.gui.beans.TextViewer,\ + weka.gui.beans.GraphViewer,\ + weka.gui.beans.StripChart,\ + weka.gui.beans.ImageSaver,\ + weka.gui.beans.ImageViewer + weka.gui.beans.KnowledgeFlow.Tools=weka.gui.beans.Sorter,\ + weka.gui.beans.SubstringLabeler,\ + weka.gui.beans.SubstringReplacer +weka.gui.beans.KnowledgeFlow.Flow=weka.gui.beans.Appender,\ + weka.gui.beans.FlowByExpression,\ + weka.gui.beans.InstanceStreamToBatchMaker,\ + weka.gui.beans.Join + +# the bean panel processes keys in the generic object editor properties file. +# If there is a corresponding entry here, then a toolbar is constructed using +# the specified wrapper bean +weka.core.converters.Loader=weka.gui.beans.Loader +weka.core.converters.Saver=weka.gui.beans.Saver +weka.classifiers.Classifier=weka.gui.beans.Classifier +weka.filters.Filter=weka.gui.beans.Filter +weka.clusterers.Clusterer=weka.gui.beans.Clusterer +weka.associations.Associator=weka.gui.beans.Associator +# weka.attributeSelection.ASEvaluation=weka.gui.beans.AttributeSelector + +# toolbar ordering information for wrapper types +weka.core.converters.Loader.order=0 +weka.core.converters.Saver.order=1 +weka.filters.Filter.order=3 +weka.classifiers.Classifier.order=4 +weka.clusterers.Clusterer.order=5 +weka.associations.Associator.order=6 +# weka.attributeSelection.ASEvaluation.order=6 + +# toolbar naming aliases for weka algorithm classes +weka.core.converters.Loader.alias=DataSources +weka.core.converters.Saver.alias=DataSinks +weka.classifiers.Classifier.alias=Classifiers +weka.clusterers.Clusterer.alias=Clusterers +weka.filters.Filter.alias=Filters +weka.associations.Associator.alias=Associations + +# GUI behaviour +ScrollBarIncrementLayout=20 +ScrollBarIncrementComponents=50 +FlowWidth=2560 +FlowHeight=1440 +PreferredExtension=.kfml +UserComponentsInXML=false + +# colours +weka.gui.beans.StripChart.backgroundColour=black +weka.gui.beans.StripChart$LegendPanel.borderColour=blue +#weka.gui.beans.StripChart.backgroundColour=white +#weka.gui.beans.StripChart$LegendPanel.borderColour=black diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/BeansProperties.class b/workflow/apps/java/clustering/bin/weka/gui/beans/BeansProperties.class new file mode 100644 index 00000000..5f3814ea Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/beans/BeansProperties.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/ChartEvent.class b/workflow/apps/java/clustering/bin/weka/gui/beans/ChartEvent.class new file mode 100644 index 00000000..9e4121a2 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/beans/ChartEvent.class differ diff --git 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a/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$BeanLayout.class b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$BeanLayout.class new file mode 100644 index 00000000..ab327953 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$BeanLayout.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$CloseableTabTitle$1.class b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$CloseableTabTitle$1.class new file mode 100644 index 00000000..b5c85d0a Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$CloseableTabTitle$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$CloseableTabTitle$TabButton$1.class b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$CloseableTabTitle$TabButton$1.class new file mode 100644 index 00000000..37ed1435 Binary files /dev/null and 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b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$InvisibleNode.class new file mode 100644 index 00000000..4fa6c0d4 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$InvisibleNode.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$InvisibleTreeModel.class b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$InvisibleTreeModel.class new file mode 100644 index 00000000..1b008048 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$InvisibleTreeModel.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$JTreeLeafDetails.class b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$JTreeLeafDetails.class new file mode 100644 index 00000000..c3db9050 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$JTreeLeafDetails.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$KFLogPanel.class b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$KFLogPanel.class new file mode 100644 index 00000000..e6bfa026 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$KFLogPanel.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$KFPerspective.class b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$KFPerspective.class new file mode 100644 index 00000000..29a8991e Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$KFPerspective.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$MainKFPerspective$1.class b/workflow/apps/java/clustering/bin/weka/gui/beans/KnowledgeFlowApp$MainKFPerspective$1.class new file mode 100644 index 00000000..e4946b6d Binary files /dev/null and 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00000000..ba5867fe --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/beans/README_KnowledgeFlow @@ -0,0 +1,202 @@ +=============================================================== +KnowledgeFlow GUI Quick Primer +=============================================================== + +What's new in the KnowledgeFlow: + +The KnowledgeFlow has undergone a major UI overhaul in Weka 3.7.4. New +features include: + +* Move from tabbed toolbars of components to a tree +* Multiple flow layouts (each in its own tab) +* New icons for general controls +* Support for cut, copy, paste and delete of multiple components +* "Save as" as well as "Save" +* Informational notes can now be added to the layout +* Undo buffer +* "Select all" button +* Drag multiple components +* Snap-to-grid +* New buttons to run flow in parallel mode (all data sources launched simultaneously) + and sequential mode (data sources launched one after the other in an order + specified by the user) +* Template flows demonstrating example learning processes +* Plugin "perspectives" that allow additional functionality to take over + the main UI + +Introduction: + +The KnowledgeFlow provides an alternative to the Explorer as a +graphical front end to Weka's core algorithms. It presents a +"data-flow" inspired interface to Weka. The user can select Weka +components from a pallete, place them on a layout canvas and connect +them together in order to form a "knowledge flow" for processing and +analyzing data. At present, all of Weka's classifiers, filters, +clusterers, loaders and savers are available in the KnowledgeFlow +along with some extra tools. + +The KnowledgeFlow can handle data either incrementally or in batches +(the Explorer handles batch data only). Of course learning from data +incrementally requires a classifier that can be updated on an instance +by instance basis. There are a number of schemes that can handle data +incrementally: NaiveBayesUpdateable, IB1, IBk, LWR (locally weighted +regression), SGD, SPegasos, Cobweb and RacedIncrementalLogitBoost. + +Features of the KnowledgeFlow: + +* intuitive data flow style layout +* process data in batches or incrementally +* process multiple batches or streams in parallel! (each separate flow + executes in its own thread). Alternatively, multiple streams can be + executed sequentially, in a user-specified order +* chain filters together +* view models produced by classifiers for each fold in a cross validation +* visualize performance of incremental classifiers during + processing (scrolling plots of classification accuracy, RMS error, + predictions etc) +* access additional non flow-based functionality through plugin + "perspectives" + +Components available in the KnowledgeFlow: + +DataSources: + All of Weka's loaders are available + +DataSinks: + All of Weka's savers are available + +Filters: + All of Weka's filters are available + +Classifiers: + All of Weka's classifiers are available + +Clusterers: + All of Weka's clusterers are available + +Evaluation: + TrainingSetMaker - make a data set into a training set + TestSetMaker - make a data set into a test set + CrossValidationFoldMaker - split any data set, training set or test set + into folds + TrainTestSplitMaker - split any data set, training set or test set into + a training set and a test set + ClassAssigner - assign a column to be the class for any data set, training + set or test set + ClassValuePicker - choose a class value to be considered as the "positive" + class. This is useful when generating data for ROC style curves (see + below) + ClassifierPerformanceEvaluator - evaluate the performance of batch + trained/tested classifiers + IncrementalClassifierEvaluator - evaluate the performance of incrementally + trained classifiers + ClustererPerformanceEvaluator - evaluate the performance of batch + trained/tested clusterers + PredictionAppender - append classifier predictions to a test set. For + discrete class problems, can either append predicted class labels or + probability distributions + SerializedModelSaver - save a classifier out to a file for later use. + +Visualization: + DataVisualizer - component that can pop up a panel for visualizing data in + a single large 2D scatter plot + ScatterPlotMatrix - component that can pop up a panel containing a matrix of + small scatter plots (clicking on a small plot pops up a large scatter + plot) + AttributeSummarizer - component that can pop up a panel containing a matrix + of histogram plots - one for each of the attributes in the input data + ModelPerformanceChart - component that can pop up a panel for visualizing + threshold (i.e. ROC style) curves. + TextViewer - component for showing textual data. Can show data sets, + classification performance statistics etc. + GraphViewer - component that can pop up a panel for visualizing tree based + models + StripChart - component that can pop up a panel that displays a scrolling + plot of data (used for viewing the online performance of incremental + classifiers) + CostBenefitAnalysis - interactively and graphically explore the effects + of changing costs/benefits and adjusting prediction thresholds. + + +--------------- + +Launching the KnowledgeFlow: + +The Weka GUI Chooser window is used to launch Weka's graphical +environments. Select the button labeled "KnowledgeFlow" to start the +KnowledgeFlow. Alternatively, you can launch the KnowledgeFlow from a +terminal window by typing "java weka.gui.beans.KnowledgeFlow". + +EXAMPLE: +----------------- +Setting up a flow to load an arff file (batch mode) and +perform a cross validation using J48 (Weka's C4.5 implementation). NOTE, +this example ("Cross validation") can be accessed from the Templates +button (third in from the right in the toolbar) in the KnowledgeFlow +UI. + +First start the KnowlegeFlow. + +Next expand the DataSources entry in the tree and choose "ArffLoader" +from the toolbar (the mouse pointer will change to a "cross hairs"). + +Next place the ArffLoader component on the layout area by clicking +somewhere on the layout (A copy of the ArffLoader icon will appear on +the layout area). + +Next specify an arff file to load by first right clicking the mouse +over the ArffLoader icon on the layout. A pop-up menu will +appear. Select "Configure" under "Edit" in the list from this menu and +browse to the location of your arff file. Alternatively, you can +double-click on the icon to bring up the configuration dialog (if +the component in question has one). + +Next expand the "Evaluation" entry in the tree and choose the +"ClassAssigner" (allows you to choose which column to be the class) +component from the toolbar. Place this on the layout. + +Now connect the ArffLoader to the ClassAssigner: first right click +over the ArffLoader and select the "dataSet" under "Connections" in +the menu. A "rubber band" line will appear. Move the mouse over the +ClassAssigner component and left click - a red line labeled "dataSet" +will connect the two components. + +Next right click over the ClassAssigner and choose "Configure" from +the menu. This will pop up a window from which you can specify which +column is the class in your data (last is the default). + +Next grab a "CrossValidationFoldMaker" component from Evaluation +and place it on the layout. Connect the ClassAssigner to the +CrossValidationFoldMaker by right clicking over "ClassAssigner" and +selecting "dataSet" from under "Connections" in the menu. + +Next expand the "Classifiers" entry in the tree, then the "trees" +sub-entry and select the "J48" component. Place it on the layout. + +Connect the CrossValidationFoldMaker to J48 TWICE by first choosing +"trainingSet" and then "testSet" from the pop-up menu for the +CrossValidationFoldMaker. + +Next go back to the "Evaluation" entry and place a +"ClassifierPerformanceEvaluator" component on the layout. Connect J48 +to this component by selecting the "batchClassifier" entry from the +pop-up menu for J48. + +Next expand the "Visualization" entry and place a "TextViewer" +component on the layout. Connect the ClassifierPerformanceEvaluator to +the TextViewer by selecting the "text" entry from the pop-up menu for +ClassifierPerformanceEvaluator. + +Now start the flow executing by pressing the blue "play" icon at the +top-left of the display. Progress information for the executing +components willa appear in the "Status" area and "Log" at the bottom +of the window. + +When finished you can view the results by choosing show results from +the pop-up menu for the TextViewer component. + +Other cool things to add to this flow: connect a TextViewer and/or a +GraphViewer to J48 in order to view the textual or graphical +representations of the trees produced for each fold of the cross +validation (this is something that is not possible in the Explorer). +----------------------------- diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/SQLViewerPerspective$1.class b/workflow/apps/java/clustering/bin/weka/gui/beans/SQLViewerPerspective$1.class new file mode 100644 index 00000000..2b39bd65 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/beans/SQLViewerPerspective$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/SQLViewerPerspective$2.class 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a/workflow/apps/java/clustering/bin/weka/gui/beans/templates/ROCcurves.kfml b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/ROCcurves.kfml new file mode 100644 index 00000000..8c995c44 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/ROCcurves.kfml @@ -0,0 +1,310 @@ + + + + + + + + + +] +> + + + + + 0 + 76 + 369 + ArffLoader + + + weka/gui/beans/templates/credit-g.arff + false + + + true + + + + + + 1 + 76 + 240 + ClassAssigner + + last + + + + 2 + 396 + 80 + CrossValidationFoldMaker + + false + 1 + 10 + + + + 3 + 716 + 240 + ClassifierPerformanceEvaluator + + 2 + + + + 4 + 516 + 240 + TextViewer + + + + true + + + + + TextViewer + weka/gui/beans/icons/DefaultText.gif + weka/gui/beans/icons/DefaultText_animated.gif + + TextViewer + + + + 5 + 716 + 409 + ModelPerformanceChart + + + + ModelPerformanceChart + weka/gui/beans/icons/ModelPerformanceChart.gif + weka/gui/beans/icons/ModelPerformanceChart_animated.gif + + + Weka Chart Renderer + 400 + ModelPerformanceChart + + + true + + + 500 + + + + + + 6 + 108 + 438 + + Double click to configure me with your own ARFF file + + -1 + + + + 7 + 174 + 245 + + Double click to specify the class attribute + + -1 + + + + 8 + 540 + 175 + + Performance results reported here. Right-click and choose "show results" + + -1 + + + + 9 + 630 + 338 + + Right-click and select "show chart" to see ROC curves for both classifiers + + -1 + + + + 10 + 396 + 280 + Logistic + + + false + + -R + 1.0E-8 + -M + -1 + + + + false + 2 + + + + 11 + 516 + 409 + ClassifierPerformanceEvaluator + + 2 + + + + 12 + 76 + 80 + ClassValuePicker + + good + + + + 13 + 185 + 132 + + Double click to choose the class value to be considered as the "positive" class + + -1 + + + + 14 + 716 + 80 + RandomForest + + + false + + -I + 10 + -K + 0 + -S + 1 + -num-slots + 1 + + + false + 2 + + + + 15 + 364 + 24 + + <html><b>NOTE: this flow is configured to run out of the box.</b> It loads an ARFF file as a resource from the classpath. If you want to use your own data, edit the ArffLoader.</html> + + -1 + + + + + + 0 + 1 + dataSet + false + + + 3 + 4 + text + false + + + 2 + 10 + trainingSet + false + + + 2 + 10 + testSet + false + + + 10 + 11 + batchClassifier + false + + + 3 + 5 + thresholdData + false + + + 11 + 5 + thresholdData + false + + + 11 + 4 + text + false + + + 1 + 12 + dataSet + false + + + 12 + 2 + dataSet + false + + + 2 + 14 + trainingSet + false + + + 2 + 14 + testSet + false + + + 14 + 3 + batchClassifier + false + + + diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/templates/credit-g.arff b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/credit-g.arff new file mode 100644 index 00000000..a0e349a4 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/credit-g.arff @@ -0,0 +1,1301 @@ +% Description of the German credit dataset. +% +% 1. Title: German Credit data +% +% 2. Source Information +% +% Professor Dr. Hans Hofmann +% Institut f"ur Statistik und "Okonometrie +% Universit"at Hamburg +% FB Wirtschaftswissenschaften +% Von-Melle-Park 5 +% 2000 Hamburg 13 +% +% 3. Number of Instances: 1000 +% +% Two datasets are provided. the original dataset, in the form provided +% by Prof. Hofmann, contains categorical/symbolic attributes and +% is in the file "german.data". +% +% For algorithms that need numerical attributes, Strathclyde University +% produced the file "german.data-numeric". This file has been edited +% and several indicator variables added to make it suitable for +% algorithms which cannot cope with categorical variables. Several +% attributes that are ordered categorical (such as attribute 17) have +% been coded as integer. This was the form used by StatLog. +% +% +% 6. Number of Attributes german: 20 (7 numerical, 13 categorical) +% Number of Attributes german.numer: 24 (24 numerical) +% +% +% 7. Attribute description for german +% +% Attribute 1: (qualitative) +% Status of existing checking account +% A11 : ... < 0 DM +% A12 : 0 <= ... < 200 DM +% A13 : ... >= 200 DM / +% salary assignments for at least 1 year +% A14 : no checking account +% +% Attribute 2: (numerical) +% Duration in month +% +% Attribute 3: (qualitative) +% Credit history +% A30 : no credits taken/ +% all credits paid back duly +% A31 : all credits at this bank paid back duly +% A32 : existing credits paid back duly till now +% A33 : delay in paying off in the past +% A34 : critical account/ +% other credits existing (not at this bank) +% +% Attribute 4: (qualitative) +% Purpose +% A40 : car (new) +% A41 : car (used) +% A42 : furniture/equipment +% A43 : radio/television +% A44 : domestic appliances +% A45 : repairs +% A46 : education +% A47 : (vacation - does not exist?) +% A48 : retraining +% A49 : business +% A410 : others +% +% Attribute 5: (numerical) +% Credit amount +% +% Attibute 6: (qualitative) +% Savings account/bonds +% A61 : ... < 100 DM +% A62 : 100 <= ... < 500 DM +% A63 : 500 <= ... < 1000 DM +% A64 : .. >= 1000 DM +% A65 : unknown/ no savings account +% +% Attribute 7: (qualitative) +% Present employment since +% A71 : unemployed +% A72 : ... < 1 year +% A73 : 1 <= ... < 4 years +% A74 : 4 <= ... < 7 years +% A75 : .. >= 7 years +% +% Attribute 8: (numerical) +% Installment rate in percentage of disposable income +% +% Attribute 9: (qualitative) +% Personal status and sex +% A91 : male : divorced/separated +% A92 : female : divorced/separated/married +% A93 : male : single +% A94 : male : married/widowed +% A95 : female : single +% +% Attribute 10: (qualitative) +% Other debtors / guarantors +% A101 : none +% A102 : co-applicant +% A103 : guarantor +% +% Attribute 11: (numerical) +% Present residence since +% +% Attribute 12: (qualitative) +% Property +% A121 : real estate +% A122 : if not A121 : building society savings agreement/ +% life insurance +% A123 : if not A121/A122 : car or other, not in attribute 6 +% A124 : unknown / no property +% +% Attribute 13: (numerical) +% Age in years +% +% Attribute 14: (qualitative) +% Other installment plans +% A141 : bank +% A142 : stores +% A143 : none +% +% Attribute 15: (qualitative) +% Housing +% A151 : rent +% A152 : own +% A153 : for free +% +% Attribute 16: (numerical) +% Number of existing credits at this bank +% +% Attribute 17: (qualitative) +% Job +% A171 : unemployed/ unskilled - non-resident +% A172 : unskilled - resident +% A173 : skilled employee / official +% A174 : management/ self-employed/ +% highly qualified employee/ officer +% +% Attribute 18: (numerical) +% Number of people being liable to provide maintenance for +% +% Attribute 19: (qualitative) +% Telephone +% A191 : none +% A192 : yes, registered under the customers name +% +% Attribute 20: (qualitative) +% foreign worker +% A201 : yes +% A202 : no +% +% +% +% 8. Cost Matrix +% +% This dataset requires use of a cost matrix (see below) +% +% +% 1 2 +% ---------------------------- +% 1 0 1 +% ----------------------- +% 2 5 0 +% +% (1 = Good, 2 = Bad) +% +% the rows represent the actual classification and the columns +% the predicted classification. +% +% It is worse to class a customer as good when they are bad (5), +% than it is to class a customer as bad when they are good (1). +% +% +% +% +% +% Relabeled values in attribute checking_status +% From: A11 To: '<0' +% From: A12 To: '0<=X<200' +% From: A13 To: '>=200' +% From: A14 To: 'no checking' +% +% +% Relabeled values in attribute credit_history +% From: A30 To: 'no credits/all paid' +% From: A31 To: 'all paid' +% From: A32 To: 'existing paid' +% From: A33 To: 'delayed previously' +% From: A34 To: 'critical/other existing credit' +% +% +% Relabeled values in attribute purpose +% From: A40 To: 'new car' +% From: A41 To: 'used car' +% From: A42 To: furniture/equipment +% From: A43 To: radio/tv +% From: A44 To: 'domestic appliance' +% From: A45 To: repairs +% From: A46 To: education +% From: A47 To: vacation +% From: A48 To: retraining +% From: A49 To: business +% From: A410 To: other +% +% +% Relabeled values in attribute savings_status +% From: A61 To: '<100' +% From: A62 To: '100<=X<500' +% From: A63 To: '500<=X<1000' +% From: A64 To: '>=1000' +% From: A65 To: 'no known savings' +% +% +% Relabeled values in attribute employment +% From: A71 To: unemployed +% From: A72 To: '<1' +% From: A73 To: '1<=X<4' +% From: A74 To: '4<=X<7' +% From: A75 To: '>=7' +% +% +% Relabeled values in attribute personal_status +% From: A91 To: 'male div/sep' +% From: A92 To: 'female div/dep/mar' +% From: A93 To: 'male single' +% From: A94 To: 'male mar/wid' +% From: A95 To: 'female single' +% +% +% Relabeled values in attribute other_parties +% From: A101 To: none +% From: A102 To: 'co applicant' +% From: A103 To: guarantor +% +% +% Relabeled values in attribute property_magnitude +% From: A121 To: 'real estate' +% From: A122 To: 'life insurance' +% From: A123 To: car +% From: A124 To: 'no known property' +% +% +% Relabeled values in attribute other_payment_plans +% From: A141 To: bank +% From: A142 To: stores +% From: A143 To: none +% +% +% Relabeled values in attribute housing +% From: A151 To: rent +% From: A152 To: own +% From: A153 To: 'for free' +% +% +% Relabeled values in attribute job +% From: A171 To: 'unemp/unskilled non res' +% From: A172 To: 'unskilled resident' +% From: A173 To: skilled +% From: A174 To: 'high qualif/self emp/mgmt' +% +% +% Relabeled values in attribute own_telephone +% From: A191 To: none +% From: A192 To: yes +% +% +% Relabeled values in attribute foreign_worker +% From: A201 To: yes +% From: A202 To: no +% +% +% Relabeled values in attribute class +% From: 1 To: good +% From: 2 To: bad +% +@relation german_credit +@attribute checking_status { '<0', '0<=X<200', '>=200', 'no checking'} +@attribute duration real +@attribute credit_history { 'no credits/all paid', 'all paid', 'existing paid', 'delayed previously', 'critical/other existing credit'} +@attribute purpose { 'new car', 'used car', furniture/equipment, radio/tv, 'domestic appliance', repairs, education, vacation, retraining, business, other} +@attribute credit_amount real +@attribute savings_status { '<100', '100<=X<500', '500<=X<1000', '>=1000', 'no known savings'} +@attribute employment { unemployed, '<1', '1<=X<4', '4<=X<7', '>=7'} +@attribute installment_commitment real +@attribute personal_status { 'male div/sep', 'female div/dep/mar', 'male single', 'male mar/wid', 'female single'} +@attribute other_parties { none, 'co applicant', guarantor} +@attribute residence_since real +@attribute property_magnitude { 'real estate', 'life insurance', car, 'no known property'} +@attribute age real +@attribute other_payment_plans { bank, stores, none} +@attribute housing { rent, own, 'for free'} +@attribute existing_credits real +@attribute job { 'unemp/unskilled non res', 'unskilled resident', skilled, 'high qualif/self emp/mgmt'} +@attribute num_dependents real +@attribute own_telephone { none, yes} +@attribute foreign_worker { yes, no} +@attribute class { good, bad} +@data +'<0',6,'critical/other existing credit',radio/tv,1169,'no known savings','>=7',4,'male single',none,4,'real estate',67,none,own,2,skilled,1,yes,yes,good +'0<=X<200',48,'existing paid',radio/tv,5951,'<100','1<=X<4',2,'female div/dep/mar',none,2,'real estate',22,none,own,1,skilled,1,none,yes,bad +'no checking',12,'critical/other existing credit',education,2096,'<100','4<=X<7',2,'male single',none,3,'real estate',49,none,own,1,'unskilled resident',2,none,yes,good +'<0',42,'existing paid',furniture/equipment,7882,'<100','4<=X<7',2,'male single',guarantor,4,'life insurance',45,none,'for free',1,skilled,2,none,yes,good +'<0',24,'delayed previously','new car',4870,'<100','1<=X<4',3,'male single',none,4,'no known property',53,none,'for free',2,skilled,2,none,yes,bad +'no checking',36,'existing paid',education,9055,'no known savings','1<=X<4',2,'male single',none,4,'no known property',35,none,'for free',1,'unskilled resident',2,yes,yes,good +'no checking',24,'existing paid',furniture/equipment,2835,'500<=X<1000','>=7',3,'male single',none,4,'life insurance',53,none,own,1,skilled,1,none,yes,good +'0<=X<200',36,'existing paid','used car',6948,'<100','1<=X<4',2,'male single',none,2,car,35,none,rent,1,'high qualif/self emp/mgmt',1,yes,yes,good +'no checking',12,'existing paid',radio/tv,3059,'>=1000','4<=X<7',2,'male div/sep',none,4,'real estate',61,none,own,1,'unskilled resident',1,none,yes,good +'0<=X<200',30,'critical/other existing credit','new car',5234,'<100',unemployed,4,'male mar/wid',none,2,car,28,none,own,2,'high qualif/self emp/mgmt',1,none,yes,bad +'0<=X<200',12,'existing paid','new car',1295,'<100','<1',3,'female div/dep/mar',none,1,car,25,none,rent,1,skilled,1,none,yes,bad +'<0',48,'existing paid',business,4308,'<100','<1',3,'female div/dep/mar',none,4,'life insurance',24,none,rent,1,skilled,1,none,yes,bad +'0<=X<200',12,'existing paid',radio/tv,1567,'<100','1<=X<4',1,'female div/dep/mar',none,1,car,22,none,own,1,skilled,1,yes,yes,good +'<0',24,'critical/other existing credit','new car',1199,'<100','>=7',4,'male single',none,4,car,60,none,own,2,'unskilled resident',1,none,yes,bad +'<0',15,'existing paid','new car',1403,'<100','1<=X<4',2,'female div/dep/mar',none,4,car,28,none,rent,1,skilled,1,none,yes,good +'<0',24,'existing paid',radio/tv,1282,'100<=X<500','1<=X<4',4,'female div/dep/mar',none,2,car,32,none,own,1,'unskilled resident',1,none,yes,bad +'no checking',24,'critical/other existing credit',radio/tv,2424,'no known savings','>=7',4,'male single',none,4,'life insurance',53,none,own,2,skilled,1,none,yes,good +'<0',30,'no credits/all paid',business,8072,'no known savings','<1',2,'male single',none,3,car,25,bank,own,3,skilled,1,none,yes,good +'0<=X<200',24,'existing paid','used car',12579,'<100','>=7',4,'female div/dep/mar',none,2,'no known property',44,none,'for free',1,'high qualif/self emp/mgmt',1,yes,yes,bad +'no checking',24,'existing paid',radio/tv,3430,'500<=X<1000','>=7',3,'male single',none,2,car,31,none,own,1,skilled,2,yes,yes,good +'no checking',9,'critical/other existing credit','new car',2134,'<100','1<=X<4',4,'male single',none,4,car,48,none,own,3,skilled,1,yes,yes,good +'<0',6,'existing paid',radio/tv,2647,'500<=X<1000','1<=X<4',2,'male single',none,3,'real estate',44,none,rent,1,skilled,2,none,yes,good +'<0',10,'critical/other existing credit','new car',2241,'<100','<1',1,'male single',none,3,'real estate',48,none,rent,2,'unskilled resident',2,none,no,good +'0<=X<200',12,'critical/other existing credit','used car',1804,'100<=X<500','<1',3,'male single',none,4,'life insurance',44,none,own,1,skilled,1,none,yes,good +'no checking',10,'critical/other existing credit',furniture/equipment,2069,'no known savings','1<=X<4',2,'male mar/wid',none,1,car,26,none,own,2,skilled,1,none,no,good +'<0',6,'existing paid',furniture/equipment,1374,'<100','1<=X<4',1,'male single',none,2,'real estate',36,bank,own,1,'unskilled resident',1,yes,yes,good +'no checking',6,'no credits/all paid',radio/tv,426,'<100','>=7',4,'male mar/wid',none,4,car,39,none,own,1,'unskilled resident',1,none,yes,good +'>=200',12,'all paid',radio/tv,409,'>=1000','1<=X<4',3,'female div/dep/mar',none,3,'real estate',42,none,rent,2,skilled,1,none,yes,good +'0<=X<200',7,'existing paid',radio/tv,2415,'<100','1<=X<4',3,'male single',guarantor,2,'real estate',34,none,own,1,skilled,1,none,yes,good +'<0',60,'delayed previously',business,6836,'<100','>=7',3,'male single',none,4,'no known property',63,none,own,2,skilled,1,yes,yes,bad +'0<=X<200',18,'existing paid',business,1913,'>=1000','<1',3,'male mar/wid',none,3,'real estate',36,bank,own,1,skilled,1,yes,yes,good +'<0',24,'existing paid',furniture/equipment,4020,'<100','1<=X<4',2,'male 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insurance',37,none,own,2,'unskilled resident',2,none,yes,good +'no checking',15,'all paid',radio/tv,1569,'100<=X<500','>=7',4,'male single',none,4,car,34,bank,own,1,'unskilled resident',2,none,yes,good +'<0',18,'existing paid',radio/tv,1936,'no known savings','4<=X<7',2,'male mar/wid',none,4,car,23,none,rent,2,'unskilled resident',1,none,yes,good +'<0',36,'existing paid',furniture/equipment,3959,'<100',unemployed,4,'male single',none,3,'life insurance',30,none,own,1,'high qualif/self emp/mgmt',1,yes,yes,good +'no checking',12,'existing paid','new car',2390,'no known savings','>=7',4,'male single',none,3,car,50,none,own,1,skilled,1,yes,yes,good +'no checking',12,'existing paid',furniture/equipment,1736,'<100','4<=X<7',3,'female div/dep/mar',none,4,'real estate',31,none,own,1,'unskilled resident',1,none,yes,good +'<0',30,'existing paid','used car',3857,'<100','1<=X<4',4,'male div/sep',none,4,'life insurance',40,none,own,1,'high qualif/self emp/mgmt',1,yes,yes,good +'no checking',12,'existing paid',radio/tv,804,'<100','>=7',4,'male single',none,4,car,38,none,own,1,skilled,1,none,yes,good +'<0',45,'existing paid',radio/tv,1845,'<100','1<=X<4',4,'male single',none,4,'no known property',23,none,'for free',1,skilled,1,yes,yes,bad +'0<=X<200',45,'critical/other existing credit','used car',4576,'100<=X<500',unemployed,3,'male single',none,4,car,27,none,own,1,skilled,1,none,yes,good diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/templates/cvTemplate.kfml b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/cvTemplate.kfml new file mode 100644 index 00000000..121b9531 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/cvTemplate.kfml @@ -0,0 +1,244 @@ + + + + + + + + + +] +> + + + + + 0 + 113 + 114 + ArffLoader + + + weka/gui/beans/templates/iris.arff + false + + + true + + + + + + 1 + 273 + 114 + ClassAssigner + + last + + + + 2 + 473 + 114 + CrossValidationFoldMaker + + false + 1 + 10 + + + + 3 + 393 + 314 + ClassifierPerformanceEvaluator + + 2 + + + + 4 + 673 + 314 + TextViewer + + + + true + + + + + TextViewer + weka/gui/beans/icons/DefaultText.gif + weka/gui/beans/icons/DefaultText_animated.gif + + TextViewer + + + + 5 + 153 + 314 + ModelPerformanceChart + + + + ModelPerformanceChart + weka/gui/beans/icons/ModelPerformanceChart.gif + weka/gui/beans/icons/ModelPerformanceChart_animated.gif + + + Weka Chart Renderer + 400 + ModelPerformanceChart + + + true + + + 500 + + + + + + 6 + 120 + 187 + + Double click to configure me with an ARFF file + + -1 + + + + 7 + 287 + 197 + + Double click to specify the class attribute + + -1 + + + + 8 + 441 + 197 + + 10-fold CV by default. Double click to alter the number of folds. + + -1 + + + + 9 + 681 + 403 + + Performance results reported here. Right-click and choose "show results" + + -1 + + + + 10 + 157 + 406 + + Right-click and select "show chart" to see scatter plot and misclassified points. + + -1 + + + + 11 + 673 + 114 + J48 + + + false + + -C + 0.25 + -M + 2 + + + + + + + + + + + + + + + false + 2 + + + + 12 + 377 + 30 + + <html><b>NOTE: this flow is configured to run out of the box.</b> It loads an ARFF file as a resource from the classpath. If you want to use your own data, edit the ArffLoader.</html> + + -1 + + + + + + 0 + 1 + dataSet + false + + + 1 + 2 + dataSet + false + + + 3 + 4 + text + false + + + 3 + 5 + visualizableError + false + + + 2 + 11 + trainingSet + false + + + 2 + 11 + testSet + false + + + 11 + 3 + batchClassifier + false + + + diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/templates/incrementalLearning.kfml b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/incrementalLearning.kfml new file mode 100644 index 00000000..f8b9d201 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/incrementalLearning.kfml @@ -0,0 +1,173 @@ + + + + + + + + + +] +> + + + + + 0 + 73 + 74 + ArffLoader + + + + false + + + true + + + + + + 1 + 273 + 74 + ClassAssigner + + last + + + + 2 + 473 + 74 + NaiveBayesUpdateable + + + false + + + + + + + false + 2 + + + + 3 + 713 + 74 + IncrementalClassifierEvaluator + + 100 + false + + + + 4 + 713 + 274 + StripChart + + 500 + 5 + + + + 5 + 433 + 274 + TextViewer + + + + true + + + + + TextViewer + weka/gui/beans/icons/DefaultText.gif + weka/gui/beans/icons/DefaultText_animated.gif + + TextViewer + + + + 6 + 83 + 155 + + Double click and configure with an ARFF file to process + + -1 + + + + 7 + 276 + 146 + + Set the class attribute + + -1 + + + + 8 + 474 + 156 + + Incremental naive Bayes + + -1 + + + + 9 + 688 + 353 + + Right-click and choose "Show chart" before launching this flow. + + -1 + + + + + + 0 + 1 + instance + false + + + 1 + 2 + instance + false + + + 2 + 3 + incrementalClassifier + false + + + 3 + 5 + text + false + + + 3 + 4 + chart + false + + + diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/templates/iris.arff b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/iris.arff new file mode 100644 index 00000000..780480c7 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/iris.arff @@ -0,0 +1,225 @@ +% 1. Title: Iris Plants Database +% +% 2. Sources: +% (a) Creator: R.A. Fisher +% (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.nasa.gov) +% (c) Date: July, 1988 +% +% 3. Past Usage: +% - Publications: too many to mention!!! Here are a few. +% 1. Fisher,R.A. "The use of multiple measurements in taxonomic problems" +% Annual Eugenics, 7, Part II, 179-188 (1936); also in "Contributions +% to Mathematical Statistics" (John Wiley, NY, 1950). +% 2. Duda,R.O., & Hart,P.E. (1973) Pattern Classification and Scene Analysis. +% (Q327.D83) John Wiley & Sons. ISBN 0-471-22361-1. See page 218. +% 3. Dasarathy, B.V. (1980) "Nosing Around the Neighborhood: A New System +% Structure and Classification Rule for Recognition in Partially Exposed +% Environments". IEEE Transactions on Pattern Analysis and Machine +% Intelligence, Vol. PAMI-2, No. 1, 67-71. +% -- Results: +% -- very low misclassification rates (0% for the setosa class) +% 4. Gates, G.W. (1972) "The Reduced Nearest Neighbor Rule". IEEE +% Transactions on Information Theory, May 1972, 431-433. +% -- Results: +% -- very low misclassification rates again +% 5. See also: 1988 MLC Proceedings, 54-64. Cheeseman et al's AUTOCLASS II +% conceptual clustering system finds 3 classes in the data. +% +% 4. Relevant Information: +% --- This is perhaps the best known database to be found in the pattern +% recognition literature. Fisher's paper is a classic in the field +% and is referenced frequently to this day. (See Duda & Hart, for +% example.) The data set contains 3 classes of 50 instances each, +% where each class refers to a type of iris plant. One class is +% linearly separable from the other 2; the latter are NOT linearly +% separable from each other. +% --- Predicted attribute: class of iris plant. +% --- This is an exceedingly simple domain. +% +% 5. Number of Instances: 150 (50 in each of three classes) +% +% 6. Number of Attributes: 4 numeric, predictive attributes and the class +% +% 7. Attribute Information: +% 1. sepal length in cm +% 2. sepal width in cm +% 3. petal length in cm +% 4. petal width in cm +% 5. class: +% -- Iris Setosa +% -- Iris Versicolour +% -- Iris Virginica +% +% 8. Missing Attribute Values: None +% +% Summary Statistics: +% Min Max Mean SD Class Correlation +% sepal length: 4.3 7.9 5.84 0.83 0.7826 +% sepal width: 2.0 4.4 3.05 0.43 -0.4194 +% petal length: 1.0 6.9 3.76 1.76 0.9490 (high!) +% petal width: 0.1 2.5 1.20 0.76 0.9565 (high!) +% +% 9. Class Distribution: 33.3% for each of 3 classes. + +@RELATION iris + +@ATTRIBUTE sepallength REAL +@ATTRIBUTE sepalwidth REAL +@ATTRIBUTE petallength REAL +@ATTRIBUTE petalwidth REAL +@ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris-virginica} + +@DATA +5.1,3.5,1.4,0.2,Iris-setosa +4.9,3.0,1.4,0.2,Iris-setosa +4.7,3.2,1.3,0.2,Iris-setosa +4.6,3.1,1.5,0.2,Iris-setosa +5.0,3.6,1.4,0.2,Iris-setosa +5.4,3.9,1.7,0.4,Iris-setosa +4.6,3.4,1.4,0.3,Iris-setosa +5.0,3.4,1.5,0.2,Iris-setosa +4.4,2.9,1.4,0.2,Iris-setosa +4.9,3.1,1.5,0.1,Iris-setosa +5.4,3.7,1.5,0.2,Iris-setosa +4.8,3.4,1.6,0.2,Iris-setosa +4.8,3.0,1.4,0.1,Iris-setosa +4.3,3.0,1.1,0.1,Iris-setosa +5.8,4.0,1.2,0.2,Iris-setosa +5.7,4.4,1.5,0.4,Iris-setosa +5.4,3.9,1.3,0.4,Iris-setosa +5.1,3.5,1.4,0.3,Iris-setosa +5.7,3.8,1.7,0.3,Iris-setosa +5.1,3.8,1.5,0.3,Iris-setosa +5.4,3.4,1.7,0.2,Iris-setosa +5.1,3.7,1.5,0.4,Iris-setosa +4.6,3.6,1.0,0.2,Iris-setosa +5.1,3.3,1.7,0.5,Iris-setosa +4.8,3.4,1.9,0.2,Iris-setosa +5.0,3.0,1.6,0.2,Iris-setosa +5.0,3.4,1.6,0.4,Iris-setosa +5.2,3.5,1.5,0.2,Iris-setosa +5.2,3.4,1.4,0.2,Iris-setosa +4.7,3.2,1.6,0.2,Iris-setosa +4.8,3.1,1.6,0.2,Iris-setosa +5.4,3.4,1.5,0.4,Iris-setosa +5.2,4.1,1.5,0.1,Iris-setosa +5.5,4.2,1.4,0.2,Iris-setosa +4.9,3.1,1.5,0.1,Iris-setosa +5.0,3.2,1.2,0.2,Iris-setosa +5.5,3.5,1.3,0.2,Iris-setosa +4.9,3.1,1.5,0.1,Iris-setosa +4.4,3.0,1.3,0.2,Iris-setosa +5.1,3.4,1.5,0.2,Iris-setosa +5.0,3.5,1.3,0.3,Iris-setosa +4.5,2.3,1.3,0.3,Iris-setosa +4.4,3.2,1.3,0.2,Iris-setosa +5.0,3.5,1.6,0.6,Iris-setosa +5.1,3.8,1.9,0.4,Iris-setosa +4.8,3.0,1.4,0.3,Iris-setosa +5.1,3.8,1.6,0.2,Iris-setosa +4.6,3.2,1.4,0.2,Iris-setosa +5.3,3.7,1.5,0.2,Iris-setosa +5.0,3.3,1.4,0.2,Iris-setosa +7.0,3.2,4.7,1.4,Iris-versicolor +6.4,3.2,4.5,1.5,Iris-versicolor +6.9,3.1,4.9,1.5,Iris-versicolor +5.5,2.3,4.0,1.3,Iris-versicolor +6.5,2.8,4.6,1.5,Iris-versicolor +5.7,2.8,4.5,1.3,Iris-versicolor +6.3,3.3,4.7,1.6,Iris-versicolor +4.9,2.4,3.3,1.0,Iris-versicolor +6.6,2.9,4.6,1.3,Iris-versicolor +5.2,2.7,3.9,1.4,Iris-versicolor +5.0,2.0,3.5,1.0,Iris-versicolor +5.9,3.0,4.2,1.5,Iris-versicolor +6.0,2.2,4.0,1.0,Iris-versicolor +6.1,2.9,4.7,1.4,Iris-versicolor +5.6,2.9,3.6,1.3,Iris-versicolor +6.7,3.1,4.4,1.4,Iris-versicolor +5.6,3.0,4.5,1.5,Iris-versicolor +5.8,2.7,4.1,1.0,Iris-versicolor +6.2,2.2,4.5,1.5,Iris-versicolor +5.6,2.5,3.9,1.1,Iris-versicolor +5.9,3.2,4.8,1.8,Iris-versicolor +6.1,2.8,4.0,1.3,Iris-versicolor +6.3,2.5,4.9,1.5,Iris-versicolor +6.1,2.8,4.7,1.2,Iris-versicolor +6.4,2.9,4.3,1.3,Iris-versicolor +6.6,3.0,4.4,1.4,Iris-versicolor +6.8,2.8,4.8,1.4,Iris-versicolor +6.7,3.0,5.0,1.7,Iris-versicolor +6.0,2.9,4.5,1.5,Iris-versicolor +5.7,2.6,3.5,1.0,Iris-versicolor +5.5,2.4,3.8,1.1,Iris-versicolor +5.5,2.4,3.7,1.0,Iris-versicolor +5.8,2.7,3.9,1.2,Iris-versicolor +6.0,2.7,5.1,1.6,Iris-versicolor +5.4,3.0,4.5,1.5,Iris-versicolor +6.0,3.4,4.5,1.6,Iris-versicolor +6.7,3.1,4.7,1.5,Iris-versicolor +6.3,2.3,4.4,1.3,Iris-versicolor +5.6,3.0,4.1,1.3,Iris-versicolor +5.5,2.5,4.0,1.3,Iris-versicolor +5.5,2.6,4.4,1.2,Iris-versicolor +6.1,3.0,4.6,1.4,Iris-versicolor +5.8,2.6,4.0,1.2,Iris-versicolor +5.0,2.3,3.3,1.0,Iris-versicolor +5.6,2.7,4.2,1.3,Iris-versicolor +5.7,3.0,4.2,1.2,Iris-versicolor +5.7,2.9,4.2,1.3,Iris-versicolor +6.2,2.9,4.3,1.3,Iris-versicolor +5.1,2.5,3.0,1.1,Iris-versicolor +5.7,2.8,4.1,1.3,Iris-versicolor +6.3,3.3,6.0,2.5,Iris-virginica +5.8,2.7,5.1,1.9,Iris-virginica +7.1,3.0,5.9,2.1,Iris-virginica +6.3,2.9,5.6,1.8,Iris-virginica +6.5,3.0,5.8,2.2,Iris-virginica +7.6,3.0,6.6,2.1,Iris-virginica +4.9,2.5,4.5,1.7,Iris-virginica +7.3,2.9,6.3,1.8,Iris-virginica +6.7,2.5,5.8,1.8,Iris-virginica +7.2,3.6,6.1,2.5,Iris-virginica +6.5,3.2,5.1,2.0,Iris-virginica +6.4,2.7,5.3,1.9,Iris-virginica +6.8,3.0,5.5,2.1,Iris-virginica +5.7,2.5,5.0,2.0,Iris-virginica +5.8,2.8,5.1,2.4,Iris-virginica +6.4,3.2,5.3,2.3,Iris-virginica +6.5,3.0,5.5,1.8,Iris-virginica +7.7,3.8,6.7,2.2,Iris-virginica +7.7,2.6,6.9,2.3,Iris-virginica +6.0,2.2,5.0,1.5,Iris-virginica +6.9,3.2,5.7,2.3,Iris-virginica +5.6,2.8,4.9,2.0,Iris-virginica +7.7,2.8,6.7,2.0,Iris-virginica +6.3,2.7,4.9,1.8,Iris-virginica +6.7,3.3,5.7,2.1,Iris-virginica +7.2,3.2,6.0,1.8,Iris-virginica +6.2,2.8,4.8,1.8,Iris-virginica +6.1,3.0,4.9,1.8,Iris-virginica +6.4,2.8,5.6,2.1,Iris-virginica +7.2,3.0,5.8,1.6,Iris-virginica +7.4,2.8,6.1,1.9,Iris-virginica +7.9,3.8,6.4,2.0,Iris-virginica +6.4,2.8,5.6,2.2,Iris-virginica +6.3,2.8,5.1,1.5,Iris-virginica +6.1,2.6,5.6,1.4,Iris-virginica +7.7,3.0,6.1,2.3,Iris-virginica +6.3,3.4,5.6,2.4,Iris-virginica +6.4,3.1,5.5,1.8,Iris-virginica +6.0,3.0,4.8,1.8,Iris-virginica +6.9,3.1,5.4,2.1,Iris-virginica +6.7,3.1,5.6,2.4,Iris-virginica +6.9,3.1,5.1,2.3,Iris-virginica +5.8,2.7,5.1,1.9,Iris-virginica +6.8,3.2,5.9,2.3,Iris-virginica +6.7,3.3,5.7,2.5,Iris-virginica +6.7,3.0,5.2,2.3,Iris-virginica +6.3,2.5,5.0,1.9,Iris-virginica +6.5,3.0,5.2,2.0,Iris-virginica +6.2,3.4,5.4,2.3,Iris-virginica +5.9,3.0,5.1,1.8,Iris-virginica +% +% +% diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/templates/learnAndSaveModel.kfml b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/learnAndSaveModel.kfml new file mode 100644 index 00000000..fd069b7c --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/learnAndSaveModel.kfml @@ -0,0 +1,237 @@ + + + + + + + + + +] +> + + + + + 0 + 112 + 114 + ArffLoader + + + weka/gui/beans/templates/credit-g.arff + false + + + true + + + + + + 1 + 272 + 114 + ClassAssigner + + last + + + + 2 + 112 + 197 + + Double click to configure me with an ARFF file + + -1 + + + + 3 + 283 + 204 + + Double click to specify the class attribute + + -1 + + + + 4 + 314 + 329 + J48 + + + false + + -C + 0.25 + -M + 2 + + + + + + + + + + + + + + + false + 2 + + + + 5 + 472 + 114 + TrainingSetMaker + + + + + TrainingSetMaker + weka/gui/beans/icons/TrainingSetMaker.gif + weka/gui/beans/icons/TrainingSetMaker_animated.gif + + TrainingSetMaker + + + + 6 + 554 + 329 + SerializedModelSaver + + ${user.home} + + false + + + SerializedModelSaver + weka/gui/beans/icons/SerializedModelSaver.gif + weka/gui/beans/icons/SerializedModelSaver_animated.gif + + SerializedModelSaver + exampleModel + + 0 + + Binary serialized model file (*model) + + false + + + + 7 + 74 + 329 + TextViewer + + + + true + + + + + TextViewer + weka/gui/beans/icons/DefaultText.gif + weka/gui/beans/icons/DefaultText_animated.gif + + TextViewer + + + + 8 + 579 + 117 + + Make the dataset into a training set + + -1 + + + + 9 + 322 + 411 + + Learn a decision tree (double click to configure options) + + -1 + + + + 10 + 672 + 336 + + Double click to configure a filename prefix and directory to save the model to + + -1 + + + + 11 + 84 + 407 + + Collects the textual description of the model. + + -1 + + + + 12 + 385 + 32 + + <html><b>NOTE: this flow is configured to run out of the box.</b> It loads an ARFF file as a resource from the classpath. If you want to use your own data, edit the ArffLoader. The model is saved as "exampleModelJ48_1_1.model" to your home directory (Java property "user.home").</html> + + -1 + + + + + + 0 + 1 + dataSet + false + + + 1 + 5 + dataSet + false + + + 5 + 4 + trainingSet + false + + + 4 + 6 + batchClassifier + false + + + 4 + 7 + text + false + + + diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/templates/saveCharts.kfml b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/saveCharts.kfml new file mode 100644 index 00000000..15762f7c --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/saveCharts.kfml @@ -0,0 +1,427 @@ + + + + + + + + + +] +> + + + + + 0 + 127 + 131 + ArffLoader + + + weka/gui/beans/templates/credit-g.arff + false + + + true + + + + + + 1 + 287 + 131 + DataVisualizer + + + + DataVisualizer + weka/gui/beans/icons/DefaultDataVisualizer.gif + weka/gui/beans/icons/DefaultDataVisualizer_animated.gif + + + Weka Chart Renderer + 400 + DataVisualizer + credit_amount + + true + + + 500 + -color=/last + age + + + + 2 + 287 + 255 + AttributeSummarizer + + + + AttributeSummarizer + weka/gui/beans/icons/AttributeSummarizer.gif + weka/gui/beans/icons/AttributeSummarizer_animated.gif + + + Weka Chart Renderer + -1 + 400 + 100 + 4 + AttributeSummarizer + + + true + + + 500 + -color=/last + employment + + + + 3 + 447 + 255 + ImageSaver + + ${user.home}/chart2.png + + + + ImageSaver + weka/gui/beans/icons/SerializedModelSaver.gif + weka/gui/beans/icons/SerializedModelSaver_animated.gif + + ImageSaver + + + + 4 + 447 + 131 + ImageSaver2 + + ${user.home}/chart1.png + + + + ImageSaver2 + weka/gui/beans/icons/SerializedModelSaver.gif + weka/gui/beans/icons/SerializedModelSaver_animated.gif + + ImageSaver2 + + + + 5 + 47 + 387 + ClassAssigner + + last + + + + 6 + 207 + 387 + ClassValuePicker + + good + + + + 7 + 367 + 387 + CrossValidationFoldMaker + + false + 1 + 10 + + + + 8 + 567 + 387 + NaiveBayes + + + false + + + + + + + false + 2 + + + + 9 + 727 + 387 + ClassifierPerformanceEvaluator + + 2 + + + + 10 + 727 + 253 + ModelPerformanceChart + + + + ModelPerformanceChart + weka/gui/beans/icons/ModelPerformanceChart.gif + weka/gui/beans/icons/ModelPerformanceChart_animated.gif + + + Weka Chart Renderer + 400 + ModelPerformanceChart + + + true + + + 500 + + + + + + 11 + 552 + 255 + ModelPerformanceChart2 + + + + ModelPerformanceChart2 + weka/gui/beans/icons/ModelPerformanceChart.gif + weka/gui/beans/icons/ModelPerformanceChart_animated.gif + + + Weka Chart Renderer + 400 + ModelPerformanceChart2 + credit_amount + + true + + + 500 + + age + + + + 12 + 47 + 241 + ArffLoader + + + weka/gui/beans/templates/credit-g.arff + false + + + true + + + + + + 13 + 727 + 129 + ImageSaver3 + + ${user.home}/chart3.png + + + + ImageSaver3 + weka/gui/beans/icons/SerializedModelSaver.gif + weka/gui/beans/icons/SerializedModelSaver_animated.gif + + ImageSaver3 + + + + 14 + 552 + 131 + ImageSaver4 + + ${user.home}/chart4.png + + + + ImageSaver4 + weka/gui/beans/icons/SerializedModelSaver.gif + weka/gui/beans/icons/SerializedModelSaver_animated.gif + + ImageSaver4 + + + + 15 + 543 + 323 + + Errors scatter plot + + -1 + + + + 16 + 658 + 237 + + ROC curve + + -1 + + + + 17 + 129 + 213 + + German credit data + + -1 + + + + 18 + 290 + 327 + + Bar chart for "employment" + + -1 + + + + 19 + 327 + 202 + + Scatter plot of "age" vs "credit_amount" + + -1 + + + + 20 + 376 + 45 + + <html><b>NOTE: this flow is configured to run out of the box.</b> It loads an ARFF file as a resource from the classpath. If you want to use your own data, edit the ArffLoader and configure the chart components and image savers.<p><p>Charts are saved to png files in your home directory using Weka's built-in chart rendering. For pretty charts install the <b>"jfreechartOffscreenChartRenderer"</b> package using the package manager.</html> + + -1 + + + + + + 0 + 1 + dataSet + false + + + 0 + 2 + dataSet + false + + + 2 + 3 + image + false + + + 1 + 4 + image + false + + + 5 + 6 + dataSet + false + + + 6 + 7 + dataSet + false + + + 7 + 8 + trainingSet + false + + + 7 + 8 + testSet + false + + + 8 + 9 + batchClassifier + false + + + 9 + 10 + thresholdData + false + + + 9 + 11 + visualizableError + false + + + 12 + 5 + dataSet + false + + + 10 + 13 + image + false + + + 11 + 14 + image + false + + + diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/templates/templates.props b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/templates.props new file mode 100644 index 00000000..923b0aab --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/templates.props @@ -0,0 +1,14 @@ +# List of available template flows +weka.gui.beans.KnowledgeFlow.templates=weka/gui/beans/templates/cvTemplate.kfml,\ + weka/gui/beans/templates/learnAndSaveModel.kfml,\ + weka/gui/beans/templates/ROCcurves.kfml,\ + weka/gui/beans/templates/incrementalLearning.kfml,\ + weka/gui/beans/templates/twoClusterers.kfml,\ + weka/gui/beans/templates/saveCharts.kfml,\ + +weka.gui.beans.KnowledgeFlow.templates.desc=Cross validation,\ + Learn and save a model,\ + ROC curves for two classifiers,\ + Learn and evaluate naive Bayes incrementally,\ + Compare two clusterers,\ + Save various charts to files diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/templates/twoClusterers.kfml b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/twoClusterers.kfml new file mode 100644 index 00000000..369587df --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/beans/templates/twoClusterers.kfml @@ -0,0 +1,298 @@ + + + + + + + + + +] +> + + + + + 0 + 69 + 314 + ArffLoader + + + weka/gui/beans/templates/iris.arff + false + + + true + + + + + + 1 + 391 + 91 + EM + + + + -I + 100 + -N + -1 + -M + 1.0E-6 + -S + 100 + + + + + + 2 + 591 + 91 + ClustererPerformanceEvaluator + + + + + ClustererPerformanceEvaluator + weka/gui/beans/icons/ClustererPerformanceEvaluator.gif + weka/gui/beans/icons/ClustererPerformanceEvaluator_animated.gif + + ClustererPerformanceEvaluator + + + + 3 + 713 + 194 + TextViewer + + + + true + + + + + TextViewer + weka/gui/beans/icons/DefaultText.gif + weka/gui/beans/icons/DefaultText_animated.gif + + TextViewer + + + + 4 + 233 + 194 + TrainTestSplitMaker + + 1 + 66.0 + + + + 5 + 393 + 314 + MakeDensityBasedClusterer + + + + -M + 1.0E-6 + -W + weka.clusterers.SimpleKMeans + -- + -N + 3 + -A + weka.core.EuclideanDistance -R first-last + -I + 500 + -S + 10 + + + + + + 6 + 593 + 314 + ClustererPerformanceEvaluator + + + + + ClustererPerformanceEvaluator + weka/gui/beans/icons/ClustererPerformanceEvaluator.gif + weka/gui/beans/icons/ClustererPerformanceEvaluator_animated.gif + + ClustererPerformanceEvaluator + + + + 7 + 64 + 400 + + Double click to configure with an ARFF dataset. + + -1 + + + + 8 + 219 + 289 + + 2/3 - 1/3 train-test split. Double click to change split percentage. + + -1 + + + + 9 + 418 + 181 + + EM clustering with cross-validation to choose the best number of clusters. + + -1 + + + + 10 + 385 + 407 + + Fits Gaussian distributions to the clusters found by k-means. Double click to configure. + + -1 + + + + 11 + 596 + 395 + + Computes evaluation results. + + -1 + + + + 12 + 714 + 282 + + Right click and select "Show results" + + -1 + + + + 13 + 69 + 194 + Remove + + + + -R + last + + + + + + + 14 + 85 + 147 + + Remove the class column + + -1 + + + + 15 + 374 + 27 + + <html><b>NOTE: this flow is configured to run out of the box.</b> It loads an ARFF file as a resource from the classpath. If you want to use your own data, edit the ArffLoader.</html> + + -1 + + + + + + 1 + 2 + batchClusterer + false + + + 2 + 3 + text + false + + + 4 + 1 + trainingSet + false + + + 4 + 1 + testSet + false + + + 4 + 5 + trainingSet + false + + + 4 + 5 + testSet + false + + + 5 + 6 + batchClusterer + false + + + 6 + 3 + text + false + + + 0 + 13 + dataSet + false + + + 13 + 4 + dataSet + false + + + diff --git a/workflow/apps/java/clustering/bin/weka/gui/beans/xml/XMLBeans.class b/workflow/apps/java/clustering/bin/weka/gui/beans/xml/XMLBeans.class new file mode 100644 index 00000000..779c25c3 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/beans/xml/XMLBeans.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/boundaryvisualizer/BoundaryPanel$1.class b/workflow/apps/java/clustering/bin/weka/gui/boundaryvisualizer/BoundaryPanel$1.class new file mode 100644 index 00000000..5f8dba18 Binary files /dev/null and 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b/workflow/apps/java/clustering/bin/weka/gui/experiment/Experimenter.props @@ -0,0 +1,95 @@ +# This props file contains default values for the Weka Experimenter. +# "simple" indicates that this property is only available for simple +# experiments. +# +# $Revision: 11944 $ + +# the default setup panel (classname) +SetupPanel=weka.gui.experiment.SimpleSetupPanel + +# the default extension in the file-dialog +# possible values: +# .exp +# .xml +# .koml (if available) +Extension=.exp + +# the default destination ("simple") +# possible values: +# ARFF file +# CSV file +# JDBC database +Destination=ARFF file + +# the experiment type ("simple") +# possible values: +# Cross-validation +# Train/Test Percentage Split (data randomized) +# Train/Test Percentage Split (order preserved) +ExperimentType=Cross-validation + +# whether classification is the default ("simple") +UseClassification=true + +# the default number of CV folds ("simple") +Folds=10 + +# the default percentage for training ("simple") +TrainPercentage=66 + +# the default number of repetitions ("simple") +Repetitions=10 + +# whether datasets are first iterated ("simple") +DatasetsFirst=true + +# the initial datasets directory +# Note for Win32: the path backslashes have to written as "\\" +InitialDatasetsDirectory= + +# whether to use relative paths +UseRelativePaths=false + +# the default tester to use +# possible values (at least): +# Paired T-Tester (corrected) +# Paired T-Tester +Tester=Paired T-Tester (corrected) + +# the row selection +Row=Key_Dataset + +# the column selection +Column=Key_Scheme,Key_Scheme_options,Key_Scheme_version_ID + +# the default comparison field (lower case!) +# see ComboBox in Experimenter +ComparisonField=percent_correct + +# the default significance +Significance=0.05 + +# the default sorting +Sorting= + +# whether stddevs are displayed by default +ShowStdDev=false + +# whether the Average is displayed by default +ShowAverage=false + +# the default precision for the mean +MeanPrecision=2 + +# the default precision for the stdev +StdDevPrecision=2 + +# the classname and options of the ResultMatrix, reponsible for the default +# output format. +# NB: The other defaults listed in this props file override the "advanced" +# options specified in this property. +OutputFormat=weka.experiment.ResultMatrixPlainText -col-name-width 0 -row-name-width 25 -mean-width 0 -stddev-width 0 -sig-width 0 -count-width 5 -print-col-names -print-row-names -enum-col-names + +# whether filter classnames are removed by default +RemoveFilterClassnames=false + diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/ExperimenterDefaults.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/ExperimenterDefaults.class new file mode 100644 index 00000000..be5d4f67 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/ExperimenterDefaults.class differ diff --git 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a/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$11.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$11.class new file mode 100644 index 00000000..49d0ab42 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$11.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$12.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$12.class new file mode 100644 index 00000000..ad639973 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$12.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$13.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$13.class new file mode 100644 index 00000000..31833043 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$13.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$2.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$2.class new file mode 100644 index 00000000..ebe95033 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$2.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$3.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$3.class new file mode 100644 index 00000000..ec472e03 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$3.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$4.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$4.class new file mode 100644 index 00000000..94604970 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$4.class differ diff --git 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a/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$8.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$8.class new file mode 100644 index 00000000..02e80212 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$8.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$9.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$9.class new file mode 100644 index 00000000..75570779 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel$9.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel.class new file mode 100644 index 00000000..d74d43d0 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SetupPanel.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$1.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$1.class new file mode 100644 index 00000000..ccbdc7a8 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$10.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$10.class new file mode 100644 index 00000000..43b37262 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$10.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$11.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$11.class new file mode 100644 index 00000000..1004f803 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$11.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$12.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$12.class new file mode 100644 index 00000000..e1d5a443 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$12.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$13.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$13.class new file mode 100644 index 00000000..0dc7137b Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$13.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$14.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$14.class new file mode 100644 index 00000000..09dcd7a6 Binary files /dev/null and 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files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$4.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$5.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$5.class new file mode 100644 index 00000000..5396340f Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$5.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$6.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$6.class new file mode 100644 index 00000000..c6c0654a Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$6.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$7.class b/workflow/apps/java/clustering/bin/weka/gui/experiment/SimpleSetupPanel$7.class new file mode 100644 index 00000000..801bf9d1 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mode 100644 index 00000000..feec61b0 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/explorer/Explorer.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/explorer/Explorer.props b/workflow/apps/java/clustering/bin/weka/gui/explorer/Explorer.props new file mode 100644 index 00000000..0168c068 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/explorer/Explorer.props @@ -0,0 +1,189 @@ +# This props file contains default values for the Weka Explorer. +# +# Notes: +# - backslashes within options, e.g., for the default "Classifier", need +# to be doubled (the backslashes get interpreted already when a property +# is read). +# +# Author FracPete (fracpete at waikato dot ac dot nz) +# Version $Revision: 7526 $ + +# if set to true the Capabilities filters in the GOE will be initialized +# based on the full dataset that has been loaded into the Explorer +# otherwise only the header (true|false) +# Note: The tabs in the Explorer have their own class combobox, which means +# that the data has to be inspected several times (changing the class +# combobox only leads to an inspection of the data in the current tab), +# which can be slow on big datasets. +InitGenericObjectEditorFilter=True + +# The tabs to display apart from the PreprocessPanel. +# +# The classes listed here must import the weka.gui.explorer.Explorer.ExplorerPanel +# interface. Optionally, they can also import the +# weka.gui.explorer.Explorer.LogHandler interface if they want to use the logging +# functionality of the Explorer and the +# weka.gui.exporer.Explorer.CapabilitiesFilterChangeListener interface +# in case they need to know when the Capabilities have changed, e.g., when a +# new dataset has been loaded into the Explorer. +# +# Additional options follow the classname after a colon. +# Currently supported options are: +# standalone - the tab does not depend on the PreprocessPanel to load the data first +# +Tabs=weka.gui.explorer.ClassifierPanel,\ + weka.gui.explorer.ClustererPanel,\ + weka.gui.explorer.AssociationsPanel,\ + weka.gui.explorer.AttributeSelectionPanel,\ + weka.gui.explorer.VisualizePanel + +# the initial directory for opening datasets. +# the following placeholders are recognized +# %t - the temp directory +# %h - the user's home directory +# %c - the current directory +# %% - gets replaced by a single percentage sign +InitialDirectory=% + +# whether to create undo points +enableUndo=true + +# the directory in which to create undo files +# %t is a placeholder for the standard system temp directory +undoDirectory=%t + +# the default filter, including options (can be left empty) +Filter= + +# the default classifier in the classify tab, including options +# (default is ZeroR) +Classifier=weka.classifiers.rules.ZeroR + +# the default test mode in the classify tab +# (according to "testMode" variable in startClassifier method) +# 1 - cross-validation +# 2 - percentage split +# 3 - use training set +# 4 - supplied test set +# (default is 1 - CV) +ClassifierTestMode=1 + +# the default number of folds for CV in the classify tab +# (default is 10) +ClassifierCrossvalidationFolds=10 + +# the default percentage split % in the classify tab (integer: 1-99) +# (default is 66) +ClassifierPercentageSplit=66 + +# whether the classifier model is output (true|false) +# (default is true) +ClassifierOutputModel=true + +# whether additional per-class stats of the classifier model are +# output (true|false) +# (default is true) +ClassifierOutputPerClassStats=true + +# whether the entropy based evaluation measures of the classifier model are +# output (true|false) +# (default is false) +ClassifierOutputEntropyEvalMeasures=false + +# whether the confusion matrix is output for the classifier (true|false) +# (default is true) +ClassifierOutputConfusionMatrix=true + +# whether the predictions of the classifier are stored for visulization +# purposes (true|false) +# (default is true) +ClassifierStorePredictionsForVis=true + +# whether the predictions of the classifier output as well (true|false) +# (default is false) +ClassifierOutputPredictions=false + +# lists the attributes indices to output in addition to the predictions +# (default is "") +ClassifierOutputAdditionalAttributes= + +# whether the evaluation of the classifier is done cost-sensitively (true|false) +# (default is false) +# Note: a cost matrix still has to be provided! +ClassifierCostSensitiveEval=false + +# the default random seed in the classify tab +# (default is 1) +ClassifierRandomSeed=1 + +# whether the order is preserved in case of percentage split in the classifier +# tab +# (default is false) +ClassifierPreserveOrder=false + +# whether the source code of a Sourcable classifier is output as well in the +# classifier tab +# (default is false) +ClassifierOutputSourceCode=false + +# the default classname of a Sourcable classifier in the classifier tab +# (default is Foobar) +ClassifierSourceCodeClass=WekaClassifier + +# the class (incl. options) for collecting the predictions and turning them +# into plotable instances for displaying the classifier errors. +ClassifierErrorsPlotInstances=weka.gui.explorer.ClassifierErrorsPlotInstances + +# The minimum plot size for numeric attributes (when visualizing classifier errors) +ClassifierErrorsMinimumPlotSizeNumeric=1 + +# The maximum plot size for numeric attributes (when visualizing classifier errors) +ClassifierErrorsMaximumPlotSizeNumeric=20 + +# the default clusterer, including options +# (default is EM) +Clusterer=weka.clusterers.EM + +# the default test mode in the cluster tab +# (according to "testMode" variable in startClusterer method) +# 2 - percentage split +# 3 - use training set +# 4 - supplied test set +# 5 - classes to clusters evaluation +# (default is 3 - training set) +ClustererTestMode=3 + +# whether the clusters are stored for visualization purposes (true|false) +# (default is true) +ClustererStoreClustersForVis=true + +# the class (incl. options) for collecting the predictions and turning them +# into plotable instances for displaying the cluster assignments. +ClustererAssignmentsPlotInstances=weka.gui.explorer.ClustererAssignmentsPlotInstances + +# the default associator, including options +# (default is Apriori) +Associator=weka.associations.Apriori + +# the default attribute evaluator, including options +# (default is CfsSubsetEval) +ASEvaluation=weka.attributeSelection.CfsSubsetEval + +# the default attribute selection search scheme, including options +# (default is BestFirst) +ASSearch=weka.attributeSelection.BestFirst + +# the default test mode in the attribute selection tab +# (according to "testMode" variable in startAttributeSelection method) +# 0 - use full training set +# 1 - cross-validation +# (default is 0 - full training set) +ASTestMode=0 + +# the default number of folds for CV in the attribute selection tab +# (default is 10) +ASCrossvalidationFolds=10 + +# the default random seed in the attribute selection tab +# (default is 1) +ASRandomSeed=1 diff --git a/workflow/apps/java/clustering/bin/weka/gui/explorer/ExplorerDefaults.class b/workflow/apps/java/clustering/bin/weka/gui/explorer/ExplorerDefaults.class new file mode 100644 index 00000000..a6e26864 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/explorer/ExplorerDefaults.class differ diff --git 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b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/LayoutPanel$1.class new file mode 100644 index 00000000..137e8b79 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/LayoutPanel$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/LayoutPanel$10.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/LayoutPanel$10.class new file mode 100644 index 00000000..cb8a1c49 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/LayoutPanel$10.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/LayoutPanel$11.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/LayoutPanel$11.class new file mode 100644 index 00000000..7a8e5aba Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/LayoutPanel$11.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/LayoutPanel$12.class 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a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$1.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$1.class new file mode 100644 index 00000000..ec484566 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$10.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$10.class new file mode 100644 index 00000000..673c110c Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$10.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$11.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$11.class new file mode 100644 index 00000000..6bb09e4e Binary files /dev/null and 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differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$17.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$17.class new file mode 100644 index 00000000..0a12ace5 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$17.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$18.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$18.class new file mode 100644 index 00000000..a6ac0a58 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$18.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$19.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$19.class new file mode 100644 index 00000000..e0327e8c Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$19.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$2.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$2.class new file mode 100644 index 00000000..857a9561 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$2.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$20.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$20.class new file mode 100644 index 00000000..836aa5b9 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$20.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$21.class 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differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$24.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$24.class new file mode 100644 index 00000000..8edef694 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$24.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$25.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$25.class new file mode 100644 index 00000000..225a8331 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$25.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$26.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$26.class new file mode 100644 index 00000000..59ec29a7 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$26.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$27.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$27.class new file mode 100644 index 00000000..de4e7f0e Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$27.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$28.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$28.class new file mode 100644 index 00000000..b986f763 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$28.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$29.class 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files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$33.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$34.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$34.class new file mode 100644 index 00000000..64fffffd Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$34.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$35.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$35.class new file mode 100644 index 00000000..bb97f4c8 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$35.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/MainKFPerspectiveToolBar$36.class 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a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/README_KnowledgeFlow b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/README_KnowledgeFlow new file mode 100644 index 00000000..0c9d9dcb --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/README_KnowledgeFlow @@ -0,0 +1,205 @@ +=============================================================== +KnowledgeFlow GUI Quick Primer +=============================================================== + +What's new in the KnowledgeFlow: + +The KnowledgeFlow has been completely rewritten in Weka 3.8.0/3.9.0. +This includes a new underlying engine that is fully multithreaded +and supports pluggable execution environments. + +New features include: + +* Automatic execution of individual steps in separate threads +* Single threaded execution for streaming flows +* Separate executor service for resource intensive steps and tasks +* Support for attribute selection and boudary visualization +* JSON-based flow persistence +* Support for loading legacy .kfml flows +* Settings and preferences at the application and perspective level +* User-configurable logging level +* New and simplified API + +Introduction: + +The KnowledgeFlow provides an alternative to the Explorer as a +graphical front end to Weka's core algorithms. It presents a +"data-flow" inspired interface to Weka. The user can select Weka +steps from a pallete, place them on a layout canvas and connect +them together in order to form a "knowledge flow" for processing and +analyzing data. At present, all of Weka's classifiers, filters, +clusterers, loaders and savers are available in the KnowledgeFlow +along with some extra tools. + +The KnowledgeFlow can handle data either incrementally or in batches +(the Explorer handles batch data only). Of course learning from data +incrementally requires a classifier that can be updated on an instance +by instance basis. There are a number of schemes that can handle data +incrementally: NaiveBayesUpdateable, IB1, IBk, LWR (locally weighted +regression), SGD, SPegasos, Cobweb and RacedIncrementalLogitBoost. + +Features of the KnowledgeFlow: + +* intuitive data flow style layout +* process data in batches or incrementally +* process multiple batches or streams in parallel! (each separate flow + executes in its own thread). Alternatively, multiple streams can be + executed sequentially, in a user-specified order +* chain filters together +* view models produced by classifiers for each fold in a cross validation +* visualize performance of incremental classifiers during + processing (scrolling plots of classification accuracy, RMS error, + predictions etc) +* access additional non flow-based functionality through plugin + "perspectives" + +Steps available in the KnowledgeFlow: + +DataSources: + All of Weka's loaders are available + +DataSinks: + All of Weka's savers are available + +Filters: + All of Weka's filters are available + +Classifiers: + All of Weka's classifiers are available + +Clusterers: + All of Weka's clusterers are available + +Attribute selection: + All of Weka's attribute and subset evaluators + All of Weka's search strategies + +Evaluation: + TrainingSetMaker - make a data set into a training set + TestSetMaker - make a data set into a test set + CrossValidationFoldMaker - split any data set, training set or test set + into folds + TrainTestSplitMaker - split any data set, training set or test set into + a training set and a test set + ClassAssigner - assign a column to be the class for any data set, training + set or test set + ClassValuePicker - choose a class value to be considered as the "positive" + class. This is useful when generating data for ROC style curves (see + below) + ClassifierPerformanceEvaluator - evaluate the performance of batch + trained/tested classifiers + IncrementalClassifierEvaluator - evaluate the performance of incrementally + trained classifiers + ClustererPerformanceEvaluator - evaluate the performance of batch + trained/tested clusterers + PredictionAppender - append classifier predictions to a test set. For + discrete class problems, can either append predicted class labels or + probability distributions + SerializedModelSaver - save a classifier out to a file for later use. + +Visualization: + DataVisualizer - step that can pop up a panel for visualizing data in + a single large 2D scatter plot + ScatterPlotMatrix - step that can pop up a panel containing a matrix of + small scatter plots (clicking on a small plot pops up a large scatter + plot) + AttributeSummarizer - step that can pop up a panel containing a matrix + of histogram plots - one for each of the attributes in the input data + ModelPerformanceChart - step that can pop up a panel for visualizing + threshold (i.e. ROC style) curves. + TextViewer - step for showing textual data. Can show data sets, + classification performance statistics etc. + GraphViewer - step that can pop up a panel for visualizing tree based + models + StripChart - step that can pop up a panel that displays a scrolling + plot of data (used for viewing the online performance of incremental + classifiers) + CostBenefitAnalysis - interactively and graphically explore the effects + of changing costs/benefits and adjusting prediction thresholds. + ImageViewer - step for visualizing static images. + +Plugin steps - various packages, installable via the package manager, +provide plugin Knowledge Flow steps and perspectives. + +--------------- + +Launching the KnowledgeFlow: + +The Weka GUI Chooser window is used to launch Weka's graphical +environments. Select the button labeled "KnowledgeFlow" to start the +KnowledgeFlow. Alternatively, you can launch the KnowledgeFlow from a +terminal window by typing "java weka.gui.beans.KnowledgeFlow". + +EXAMPLE: +----------------- +Setting up a flow to load an arff file (batch mode) and +perform a cross validation using J48 (Weka's C4.5 implementation). NOTE, +this example ("Cross validation") can be accessed from the Templates +button (third in from the right in the toolbar) in the KnowledgeFlow +UI. + +First start the KnowlegeFlow. + +Next expand the DataSources entry in the tree and choose "ArffLoader" +from the toolbar (the mouse pointer will change to a "cross hairs"). + +Next place the ArffLoader step on the layout area by clicking +somewhere on the layout (A copy of the ArffLoader icon will appear on +the layout area). + +Next specify an arff file to load by first right clicking the mouse +over the ArffLoader icon on the layout. A pop-up menu will +appear. Select "Configure" under "Edit" in the list from this menu and +browse to the location of your arff file. Alternatively, you can +double-click on the icon to bring up the configuration dialog (if +the step in question has one). + +Next expand the "Evaluation" entry in the tree and choose the +"ClassAssigner" (allows you to choose which column to be the class) +step from the toolbar. Place this on the layout. + +Now connect the ArffLoader to the ClassAssigner: first right click +over the ArffLoader and select the "dataSet" under "Connections" in +the menu. A "rubber band" line will appear. Move the mouse over the +ClassAssigner step and left click - a red line labeled "dataSet" +will connect the two steps. + +Next right click over the ClassAssigner and choose "Configure" from +the menu. This will pop up a window from which you can specify which +column is the class in your data (last is the default). + +Next grab a "CrossValidationFoldMaker" step from Evaluation +and place it on the layout. Connect the ClassAssigner to the +CrossValidationFoldMaker by right clicking over "ClassAssigner" and +selecting "dataSet" from under "Connections" in the menu. + +Next expand the "Classifiers" entry in the tree, then the "trees" +sub-entry and select the "J48" step. Place it on the layout. + +Connect the CrossValidationFoldMaker to J48 TWICE by first choosing +"trainingSet" and then "testSet" from the pop-up menu for the +CrossValidationFoldMaker. + +Next go back to the "Evaluation" entry and place a +"ClassifierPerformanceEvaluator" step on the layout. Connect J48 +to this step by selecting the "batchClassifier" entry from the +pop-up menu for J48. + +Next expand the "Visualization" entry and place a "TextViewer" +step on the layout. Connect the ClassifierPerformanceEvaluator to +the TextViewer by selecting the "text" entry from the pop-up menu for +ClassifierPerformanceEvaluator. + +Now start the flow executing by pressing the blue "play" icon at the +top-left of the display. Progress information for the executing +steps willa appear in the "Status" area and "Log" at the bottom +of the window. + +When finished you can view the results by choosing show results from +the pop-up menu for the TextViewer step. + +Other cool things to add to this flow: connect a TextViewer and/or a +GraphViewer to J48 in order to view the textual or graphical +representations of the trees produced for each fold of the cross +validation. +----------------------------- diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/SQLViewerPerspective$1.class b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/SQLViewerPerspective$1.class new file mode 100644 index 00000000..1780b34b Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/SQLViewerPerspective$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/SQLViewerPerspective$2.class 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a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/ROCcurves.kf b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/ROCcurves.kf new file mode 100644 index 00000000..e673e5ab --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/ROCcurves.kf @@ -0,0 +1,227 @@ +{ + "flow_name" : "ROC curves for two classifiers", + "steps" : [ + { + "class" : "weka.knowledgeflow.steps.Loader", + "properties" : { + "loader" : { + "type" : "loader", + "class" : "weka.core.converters.ArffLoader", + "filePath" : "weka/gui/beans/templates/credit-g.arff", + "useRelativePath" : false + }, + "name" : "ArffLoader" + }, + "connections" : { + "dataSet" : [ + "ClassAssigner" + ] + }, + "coordinates" : "43,335" + }, + { + "class" : "weka.knowledgeflow.steps.ClassAssigner", + "properties" : { + "classColumn" : "last", + "name" : "ClassAssigner" + }, + "connections" : { + "dataSet" : [ + "ClassValuePicker" + ] + }, + "coordinates" : "43,206" + }, + { + "class" : "weka.knowledgeflow.steps.CrossValidationFoldMaker", + "properties" : { + "name" : "CrossValidationFoldMaker", + "numFolds" : "10", + "preserveOrder" : false, + "seed" : "1" + }, + "connections" : { + "trainingSet" : [ + "Logistic", + "RandomForest" + ], + "testSet" : [ + "Logistic", + "RandomForest" + ] + }, + "coordinates" : "363,46" + }, + { + "class" : "weka.knowledgeflow.steps.ClassifierPerformanceEvaluator", + "properties" : { + "errorPlotPointSizeProportionalToMargin" : false, + "evaluationMetricsToOutput" : "Correct,Incorrect,Kappa,Total cost,Average cost,KB relative,KB information,Correlation,Complexity 0,Complexity scheme,Complexity improvement,MAE,RMSE,RAE,RRSE,Coverage,Region size,TP rate,FP rate,Precision,Recall,F-measure,MCC,ROC area,PRC area", + "name" : "ClassifierPerformanceEvaluator" + }, + "connections" : { + "text" : [ + "TextViewer" + ], + "thresholdData" : [ + "ModelPerformanceChart" + ] + }, + "coordinates" : "683,206" + }, + { + "class" : "weka.knowledgeflow.steps.TextViewer", + "properties" : { + "name" : "TextViewer" + }, + "connections" : { + }, + "coordinates" : "483,206" + }, + { + "class" : "weka.knowledgeflow.steps.ModelPerformanceChart", + "properties" : { + "name" : "ModelPerformanceChart", + "offscreenAdditionalOpts" : "", + "offscreenHeight" : "400", + "offscreenRendererName" : "Weka Chart Renderer", + "offscreenWidth" : "500", + "offscreenXAxis" : "", + "offscreenYAxis" : "" + }, + "connections" : { + }, + "coordinates" : "683,375" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note", + "noteText" : "Double click to configure me\nwith your own ARFF file" + }, + "connections" : { + }, + "coordinates" : "22,419" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note2", + "noteText" : "Double click to\nspecify the class\nattribute" + }, + "connections" : { + }, + "coordinates" : "123,219" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note3", + "noteText" : "Performance results\nreported here. Right-click\nand choose \"show results\"" + }, + "connections" : { + }, + "coordinates" : "461,149" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note4", + "noteText" : "Right-click and select \n\"show chart\" to see\nROC curves for both\nclassifiers" + }, + "connections" : { + }, + "coordinates" : "564,304" + }, + { + "class" : "weka.knowledgeflow.steps.Classifier", + "properties" : { + "classifier" : { + "type" : "optionHandler", + "class" : "weka.classifiers.functions.Logistic", + "options" : "-R 1.0E-8 -M -1" + }, + "loadClassifierFileName" : "", + "name" : "Logistic", + "resetIncrementalClassifier" : false, + "updateIncrementalClassifier" : true + }, + "connections" : { + "batchClassifier" : [ + "ClassifierPerformanceEvaluator2" + ] + }, + "coordinates" : "363,246" + }, + { + "class" : "weka.knowledgeflow.steps.ClassifierPerformanceEvaluator", + "properties" : { + "errorPlotPointSizeProportionalToMargin" : false, + "evaluationMetricsToOutput" : "Correct,Incorrect,Kappa,Total cost,Average cost,KB relative,KB information,Correlation,Complexity 0,Complexity scheme,Complexity improvement,MAE,RMSE,RAE,RRSE,Coverage,Region size,TP rate,FP rate,Precision,Recall,F-measure,MCC,ROC area,PRC area", + "name" : "ClassifierPerformanceEvaluator2" + }, + "connections" : { + "text" : [ + "TextViewer" + ], + "thresholdData" : [ + "ModelPerformanceChart" + ] + }, + "coordinates" : "483,375" + }, + { + "class" : "weka.knowledgeflow.steps.ClassValuePicker", + "properties" : { + "classValue" : "good", + "name" : "ClassValuePicker" + }, + "connections" : { + "dataSet" : [ + "CrossValidationFoldMaker" + ] + }, + "coordinates" : "43,46" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note5", + "noteText" : "Double click to\nchoose the class\nvalue to be considered\nas the \"positive\" class" + }, + "connections" : { + }, + "coordinates" : "115,98" + }, + { + "class" : "weka.knowledgeflow.steps.Classifier", + "properties" : { + "classifier" : { + "type" : "optionHandler", + "class" : "weka.classifiers.trees.RandomForest", + "options" : "-I 100 -S 1 -num-slots 1 -K 0" + }, + "loadClassifierFileName" : "", + "name" : "RandomForest", + "resetIncrementalClassifier" : false, + "updateIncrementalClassifier" : true + }, + "connections" : { + "batchClassifier" : [ + "ClassifierPerformanceEvaluator" + ] + }, + "coordinates" : "683,46" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note6", + "noteText" : "NOTE: this flow is configured to run out of the box. It loads an ARFF file as a resource from the classpath. If you want \nto use your own data, edit the ArffLoader." + }, + "connections" : { + }, + "coordinates" : "10,5" + } + ] +} diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/credit-g.arff b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/credit-g.arff new file mode 100644 index 00000000..a0e349a4 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/credit-g.arff @@ -0,0 +1,1301 @@ +% Description of the German credit dataset. +% +% 1. Title: German Credit data +% +% 2. Source Information +% +% Professor Dr. Hans Hofmann +% Institut f"ur Statistik und "Okonometrie +% Universit"at Hamburg +% FB Wirtschaftswissenschaften +% Von-Melle-Park 5 +% 2000 Hamburg 13 +% +% 3. Number of Instances: 1000 +% +% Two datasets are provided. the original dataset, in the form provided +% by Prof. Hofmann, contains categorical/symbolic attributes and +% is in the file "german.data". +% +% For algorithms that need numerical attributes, Strathclyde University +% produced the file "german.data-numeric". This file has been edited +% and several indicator variables added to make it suitable for +% algorithms which cannot cope with categorical variables. Several +% attributes that are ordered categorical (such as attribute 17) have +% been coded as integer. This was the form used by StatLog. +% +% +% 6. Number of Attributes german: 20 (7 numerical, 13 categorical) +% Number of Attributes german.numer: 24 (24 numerical) +% +% +% 7. Attribute description for german +% +% Attribute 1: (qualitative) +% Status of existing checking account +% A11 : ... < 0 DM +% A12 : 0 <= ... < 200 DM +% A13 : ... >= 200 DM / +% salary assignments for at least 1 year +% A14 : no checking account +% +% Attribute 2: (numerical) +% Duration in month +% +% Attribute 3: (qualitative) +% Credit history +% A30 : no credits taken/ +% all credits paid back duly +% A31 : all credits at this bank paid back duly +% A32 : existing credits paid back duly till now +% A33 : delay in paying off in the past +% A34 : critical account/ +% other credits existing (not at this bank) +% +% Attribute 4: (qualitative) +% Purpose +% A40 : car (new) +% A41 : car (used) +% A42 : furniture/equipment +% A43 : radio/television +% A44 : domestic appliances +% A45 : repairs +% A46 : education +% A47 : (vacation - does not exist?) +% A48 : retraining +% A49 : business +% A410 : others +% +% Attribute 5: (numerical) +% Credit amount +% +% Attibute 6: (qualitative) +% Savings account/bonds +% A61 : ... < 100 DM +% A62 : 100 <= ... < 500 DM +% A63 : 500 <= ... < 1000 DM +% A64 : .. >= 1000 DM +% A65 : unknown/ no savings account +% +% Attribute 7: (qualitative) +% Present employment since +% A71 : unemployed +% A72 : ... < 1 year +% A73 : 1 <= ... < 4 years +% A74 : 4 <= ... < 7 years +% A75 : .. >= 7 years +% +% Attribute 8: (numerical) +% Installment rate in percentage of disposable income +% +% Attribute 9: (qualitative) +% Personal status and sex +% A91 : male : divorced/separated +% A92 : female : divorced/separated/married +% A93 : male : single +% A94 : male : married/widowed +% A95 : female : single +% +% Attribute 10: (qualitative) +% Other debtors / guarantors +% A101 : none +% A102 : co-applicant +% A103 : guarantor +% +% Attribute 11: (numerical) +% Present residence since +% +% Attribute 12: (qualitative) +% Property +% A121 : real estate +% A122 : if not A121 : building society savings agreement/ +% life insurance +% A123 : if not A121/A122 : car or other, not in attribute 6 +% A124 : unknown / no property +% +% Attribute 13: (numerical) +% Age in years +% +% Attribute 14: (qualitative) +% Other installment plans +% A141 : bank +% A142 : stores +% A143 : none +% +% Attribute 15: (qualitative) +% Housing +% A151 : rent +% A152 : own +% A153 : for free +% +% Attribute 16: (numerical) +% Number of existing credits at this bank +% +% Attribute 17: (qualitative) +% Job +% A171 : unemployed/ unskilled - non-resident +% A172 : unskilled - resident +% A173 : skilled employee / official +% A174 : management/ self-employed/ +% highly qualified employee/ officer +% +% Attribute 18: (numerical) +% Number of people being liable to provide maintenance for +% +% Attribute 19: (qualitative) +% Telephone +% A191 : none +% A192 : yes, registered under the customers name +% +% Attribute 20: (qualitative) +% foreign worker +% A201 : yes +% A202 : no +% +% +% +% 8. Cost Matrix +% +% This dataset requires use of a cost matrix (see below) +% +% +% 1 2 +% ---------------------------- +% 1 0 1 +% ----------------------- +% 2 5 0 +% +% (1 = Good, 2 = Bad) +% +% the rows represent the actual classification and the columns +% the predicted classification. +% +% It is worse to class a customer as good when they are bad (5), +% than it is to class a customer as bad when they are good (1). +% +% +% +% +% +% Relabeled values in attribute checking_status +% From: A11 To: '<0' +% From: A12 To: '0<=X<200' +% From: A13 To: '>=200' +% From: A14 To: 'no checking' +% +% +% Relabeled values in attribute credit_history +% From: A30 To: 'no credits/all paid' +% From: A31 To: 'all paid' +% From: A32 To: 'existing paid' +% From: A33 To: 'delayed previously' +% From: A34 To: 'critical/other existing credit' +% +% +% Relabeled values in attribute purpose +% From: A40 To: 'new car' +% From: A41 To: 'used car' +% From: A42 To: furniture/equipment +% From: A43 To: radio/tv +% From: A44 To: 'domestic appliance' +% From: A45 To: repairs +% From: A46 To: education +% From: A47 To: vacation +% From: A48 To: retraining +% From: A49 To: business +% From: A410 To: other +% +% +% Relabeled values in attribute savings_status +% From: A61 To: '<100' +% From: A62 To: '100<=X<500' +% From: A63 To: '500<=X<1000' +% From: A64 To: '>=1000' +% From: A65 To: 'no known savings' +% +% +% Relabeled values in attribute employment +% From: A71 To: unemployed +% From: A72 To: '<1' +% From: A73 To: '1<=X<4' +% From: A74 To: '4<=X<7' +% From: A75 To: '>=7' +% +% +% Relabeled values in attribute personal_status +% From: A91 To: 'male div/sep' +% From: A92 To: 'female div/dep/mar' +% From: A93 To: 'male single' +% From: A94 To: 'male mar/wid' +% From: A95 To: 'female single' +% +% +% Relabeled values in attribute other_parties +% From: A101 To: none +% From: A102 To: 'co applicant' +% From: A103 To: guarantor +% +% +% Relabeled values in attribute property_magnitude +% From: A121 To: 'real estate' +% From: A122 To: 'life insurance' +% From: A123 To: car +% From: A124 To: 'no known property' +% +% +% Relabeled values in attribute other_payment_plans +% From: A141 To: bank +% From: A142 To: stores +% From: A143 To: none +% +% +% Relabeled values in attribute housing +% From: A151 To: rent +% From: A152 To: own +% From: A153 To: 'for free' +% +% +% Relabeled values in attribute job +% From: A171 To: 'unemp/unskilled non res' +% From: A172 To: 'unskilled resident' +% From: A173 To: skilled +% From: A174 To: 'high qualif/self emp/mgmt' +% +% +% Relabeled values in attribute own_telephone +% From: A191 To: none +% From: A192 To: yes +% +% +% Relabeled values in attribute foreign_worker +% From: A201 To: yes +% From: A202 To: no +% +% +% Relabeled values in attribute class +% From: 1 To: good +% From: 2 To: bad +% +@relation german_credit +@attribute checking_status { '<0', '0<=X<200', '>=200', 'no checking'} +@attribute duration real +@attribute credit_history { 'no credits/all paid', 'all paid', 'existing paid', 'delayed previously', 'critical/other existing credit'} +@attribute purpose { 'new car', 'used car', furniture/equipment, radio/tv, 'domestic appliance', repairs, education, vacation, retraining, business, other} +@attribute credit_amount real +@attribute savings_status { '<100', '100<=X<500', '500<=X<1000', '>=1000', 'no known savings'} +@attribute employment { unemployed, '<1', '1<=X<4', '4<=X<7', '>=7'} +@attribute installment_commitment real +@attribute personal_status { 'male div/sep', 'female div/dep/mar', 'male single', 'male mar/wid', 'female single'} +@attribute other_parties { none, 'co applicant', guarantor} +@attribute residence_since real +@attribute property_magnitude { 'real estate', 'life insurance', car, 'no known property'} +@attribute age real +@attribute other_payment_plans { bank, stores, none} +@attribute housing { rent, own, 'for free'} +@attribute existing_credits real +@attribute job { 'unemp/unskilled non res', 'unskilled resident', skilled, 'high qualif/self emp/mgmt'} +@attribute num_dependents real +@attribute own_telephone { none, yes} +@attribute foreign_worker { yes, no} +@attribute class { good, bad} +@data +'<0',6,'critical/other existing credit',radio/tv,1169,'no known savings','>=7',4,'male single',none,4,'real estate',67,none,own,2,skilled,1,yes,yes,good +'0<=X<200',48,'existing paid',radio/tv,5951,'<100','1<=X<4',2,'female div/dep/mar',none,2,'real estate',22,none,own,1,skilled,1,none,yes,bad +'no checking',12,'critical/other existing credit',education,2096,'<100','4<=X<7',2,'male single',none,3,'real estate',49,none,own,1,'unskilled resident',2,none,yes,good +'<0',42,'existing paid',furniture/equipment,7882,'<100','4<=X<7',2,'male single',guarantor,4,'life insurance',45,none,'for free',1,skilled,2,none,yes,good +'<0',24,'delayed previously','new car',4870,'<100','1<=X<4',3,'male single',none,4,'no known property',53,none,'for free',2,skilled,2,none,yes,bad +'no 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"weka/gui/knowledgeflow/templates/iris.arff", + "useRelativePath" : false + }, + "name" : "ArffLoader" + }, + "connections" : { + "dataSet" : [ + "ClassAssigner" + ] + }, + "coordinates" : "80,80" + }, + { + "class" : "weka.knowledgeflow.steps.ClassAssigner", + "properties" : { + "classColumn" : "last", + "name" : "ClassAssigner" + }, + "connections" : { + "dataSet" : [ + "CrossValidationFoldMaker" + ] + }, + "coordinates" : "240,80" + }, + { + "class" : "weka.knowledgeflow.steps.CrossValidationFoldMaker", + "properties" : { + "name" : "CrossValidationFoldMaker", + "numFolds" : "10", + "preserveOrder" : false, + "seed" : "1" + }, + "connections" : { + "trainingSet" : [ + "J48" + ], + "testSet" : [ + "J48" + ] + }, + "coordinates" : "440,80" + }, + { + "class" : "weka.knowledgeflow.steps.ClassifierPerformanceEvaluator", + "properties" : { + "errorPlotPointSizeProportionalToMargin" : false, + "evaluationMetricsToOutput" : "Correct,Incorrect,Kappa,Total cost,Average cost,KB relative,KB information,Correlation,Complexity 0,Complexity scheme,Complexity improvement,MAE,RMSE,RAE,RRSE,Coverage,Region size,TP rate,FP rate,Precision,Recall,F-measure,MCC,ROC area,PRC area", + "name" : "ClassifierPerformanceEvaluator" + }, + "connections" : { + "text" : [ + "TextViewer" + ], + "visualizableError" : [ + "ModelPerformanceChart" + ] + }, + "coordinates" : "360,280" + }, + { + "class" : "weka.knowledgeflow.steps.TextViewer", + "properties" : { + "name" : "TextViewer" + }, + "connections" : { + }, + "coordinates" : "640,280" + }, + { + "class" : "weka.knowledgeflow.steps.ModelPerformanceChart", + "properties" : { + "name" : "ModelPerformanceChart", + "offscreenAdditionalOpts" : "", + "offscreenHeight" : "400", + "offscreenRendererName" : "Weka Chart Renderer", + "offscreenWidth" : "500", + "offscreenXAxis" : "", + "offscreenYAxis" : "" + }, + "connections" : { + }, + "coordinates" : "120,280" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note", + "noteText" : "Double click to configure me\nwith an ARFF file" + }, + "connections" : { + }, + "coordinates" : "34,168" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note2", + "noteText" : "Double click to\nspecify the class\nattribute" + }, + "connections" : { + }, + "coordinates" : "236,171" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note3", + "noteText" : "10-fold CV by default.\nDouble click to alter\nthe number of folds." + }, + "connections" : { + }, + "coordinates" : "372,171" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note4", + "noteText" : "Performance results\nreported here. Right-click\nand choose \"show results\"" + }, + "connections" : { + }, + "coordinates" : "602,377" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note5", + "noteText" : "Right-click and select \"show chart\"\nto see scatter plot and misclassified\npoints." + }, + "connections" : { + }, + "coordinates" : "50,380" + }, + { + "class" : "weka.knowledgeflow.steps.Classifier", + "properties" : { + "classifier" : { + "type" : "optionHandler", + "class" : "weka.classifiers.trees.J48", + "options" : "-C 0.25 -M 2" + }, + "loadClassifierFileName" : "", + "name" : "J48", + "resetIncrementalClassifier" : false, + "updateIncrementalClassifier" : true + }, + "connections" : { + "batchClassifier" : [ + "ClassifierPerformanceEvaluator" + ] + }, + "coordinates" : "640,80" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note6", + "noteText" : "NOTE: this flow is configured to run out of the box. It loads an ARFF file as a resource from the classpath. If you want \nto use your own data, edit the ArffLoader." + }, + "connections" : { + }, + "coordinates" : "23,11" + } + ] +} diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/incrementalLearning.kf b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/incrementalLearning.kf new file mode 100644 index 00000000..3f060352 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/incrementalLearning.kf @@ -0,0 +1,135 @@ +{ + "flow_name" : "incrementalLearning", + "steps" : [ + { + "class" : "weka.knowledgeflow.steps.Loader", + "properties" : { + "loader" : { + "type" : "loader", + "class" : "weka.core.converters.ArffLoader", + "filePath" : "", + "useRelativePath" : false + }, + "name" : "ArffLoader" + }, + "connections" : { + "instance" : [ + "ClassAssigner" + ] + }, + "coordinates" : "40,40" + }, + { + "class" : "weka.knowledgeflow.steps.ClassAssigner", + "properties" : { + "classColumn" : "last", + "name" : "ClassAssigner" + }, + "connections" : { + "instance" : [ + "NaiveBayesUpdateable" + ] + }, + "coordinates" : "240,40" + }, + { + "class" : "weka.knowledgeflow.steps.Classifier", + "properties" : { + "classifier" : { + "type" : "optionHandler", + "class" : "weka.classifiers.bayes.NaiveBayesUpdateable", + "options" : "" + }, + "loadClassifierFileName" : "", + "name" : "NaiveBayesUpdateable", + "resetIncrementalClassifier" : false, + "updateIncrementalClassifier" : true + }, + "connections" : { + "incrementalClassifier" : [ + "IncrementalClassifierEvaluator" + ] + }, + "coordinates" : "440,40" + }, + { + "class" : "weka.knowledgeflow.steps.IncrementalClassifierEvaluator", + "properties" : { + "chartingEvalWindowSize" : 0, + "name" : "IncrementalClassifierEvaluator", + "outputPerClassInfoRetrievalStats" : false, + "statusFrequency" : 100 + }, + "connections" : { + "text" : [ + "TextViewer" + ], + "chart" : [ + "StripChart" + ] + }, + "coordinates" : "680,40" + }, + { + "class" : "weka.knowledgeflow.steps.StripChart", + "properties" : { + "XLabelFreq" : 500, + "name" : "StripChart", + "refreshFreq" : 5, + "refreshWidth" : 1 + }, + "connections" : { + }, + "coordinates" : "680,240" + }, + { + "class" : "weka.knowledgeflow.steps.TextViewer", + "properties" : { + "name" : "TextViewer" + }, + "connections" : { + }, + "coordinates" : "400,240" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note", + "noteText" : "Double click and\nconfigure with an\nARFF file to process" + }, + "connections" : { + }, + "coordinates" : "23,129" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note2", + "noteText" : "Set the class attribute" + }, + "connections" : { + }, + "coordinates" : "210,135" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note3", + "noteText" : "Incremental naive\nBayes" + }, + "connections" : { + }, + "coordinates" : "420,137" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note4", + "noteText" : "Right-click and choose\n\"Show chart\" before\nlaunching this flow." + }, + "connections" : { + }, + "coordinates" : "619,327" + } + ] +} diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/iris.arff b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/iris.arff new file mode 100644 index 00000000..780480c7 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/iris.arff @@ -0,0 +1,225 @@ +% 1. Title: Iris Plants Database +% +% 2. Sources: +% (a) Creator: R.A. Fisher +% (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.nasa.gov) +% (c) Date: July, 1988 +% +% 3. Past Usage: +% - Publications: too many to mention!!! Here are a few. +% 1. Fisher,R.A. "The use of multiple measurements in taxonomic problems" +% Annual Eugenics, 7, Part II, 179-188 (1936); also in "Contributions +% to Mathematical Statistics" (John Wiley, NY, 1950). +% 2. Duda,R.O., & Hart,P.E. (1973) Pattern Classification and Scene Analysis. +% (Q327.D83) John Wiley & Sons. ISBN 0-471-22361-1. See page 218. +% 3. Dasarathy, B.V. (1980) "Nosing Around the Neighborhood: A New System +% Structure and Classification Rule for Recognition in Partially Exposed +% Environments". IEEE Transactions on Pattern Analysis and Machine +% Intelligence, Vol. PAMI-2, No. 1, 67-71. +% -- Results: +% -- very low misclassification rates (0% for the setosa class) +% 4. Gates, G.W. (1972) "The Reduced Nearest Neighbor Rule". IEEE +% Transactions on Information Theory, May 1972, 431-433. +% -- Results: +% -- very low misclassification rates again +% 5. See also: 1988 MLC Proceedings, 54-64. Cheeseman et al's AUTOCLASS II +% conceptual clustering system finds 3 classes in the data. +% +% 4. Relevant Information: +% --- This is perhaps the best known database to be found in the pattern +% recognition literature. Fisher's paper is a classic in the field +% and is referenced frequently to this day. (See Duda & Hart, for +% example.) The data set contains 3 classes of 50 instances each, +% where each class refers to a type of iris plant. One class is +% linearly separable from the other 2; the latter are NOT linearly +% separable from each other. +% --- Predicted attribute: class of iris plant. +% --- This is an exceedingly simple domain. +% +% 5. Number of Instances: 150 (50 in each of three classes) +% +% 6. Number of Attributes: 4 numeric, predictive attributes and the class +% +% 7. Attribute Information: +% 1. sepal length in cm +% 2. sepal width in cm +% 3. petal length in cm +% 4. petal width in cm +% 5. class: +% -- Iris Setosa +% -- Iris Versicolour +% -- Iris Virginica +% +% 8. Missing Attribute Values: None +% +% Summary Statistics: +% Min Max Mean SD Class Correlation +% sepal length: 4.3 7.9 5.84 0.83 0.7826 +% sepal width: 2.0 4.4 3.05 0.43 -0.4194 +% petal length: 1.0 6.9 3.76 1.76 0.9490 (high!) +% petal width: 0.1 2.5 1.20 0.76 0.9565 (high!) +% +% 9. Class Distribution: 33.3% for each of 3 classes. + +@RELATION iris + +@ATTRIBUTE sepallength REAL +@ATTRIBUTE sepalwidth REAL +@ATTRIBUTE petallength REAL +@ATTRIBUTE petalwidth REAL +@ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris-virginica} + +@DATA +5.1,3.5,1.4,0.2,Iris-setosa +4.9,3.0,1.4,0.2,Iris-setosa +4.7,3.2,1.3,0.2,Iris-setosa +4.6,3.1,1.5,0.2,Iris-setosa +5.0,3.6,1.4,0.2,Iris-setosa +5.4,3.9,1.7,0.4,Iris-setosa +4.6,3.4,1.4,0.3,Iris-setosa +5.0,3.4,1.5,0.2,Iris-setosa +4.4,2.9,1.4,0.2,Iris-setosa +4.9,3.1,1.5,0.1,Iris-setosa +5.4,3.7,1.5,0.2,Iris-setosa +4.8,3.4,1.6,0.2,Iris-setosa +4.8,3.0,1.4,0.1,Iris-setosa +4.3,3.0,1.1,0.1,Iris-setosa +5.8,4.0,1.2,0.2,Iris-setosa +5.7,4.4,1.5,0.4,Iris-setosa +5.4,3.9,1.3,0.4,Iris-setosa +5.1,3.5,1.4,0.3,Iris-setosa +5.7,3.8,1.7,0.3,Iris-setosa +5.1,3.8,1.5,0.3,Iris-setosa +5.4,3.4,1.7,0.2,Iris-setosa +5.1,3.7,1.5,0.4,Iris-setosa +4.6,3.6,1.0,0.2,Iris-setosa +5.1,3.3,1.7,0.5,Iris-setosa +4.8,3.4,1.9,0.2,Iris-setosa +5.0,3.0,1.6,0.2,Iris-setosa +5.0,3.4,1.6,0.4,Iris-setosa +5.2,3.5,1.5,0.2,Iris-setosa +5.2,3.4,1.4,0.2,Iris-setosa +4.7,3.2,1.6,0.2,Iris-setosa +4.8,3.1,1.6,0.2,Iris-setosa +5.4,3.4,1.5,0.4,Iris-setosa +5.2,4.1,1.5,0.1,Iris-setosa +5.5,4.2,1.4,0.2,Iris-setosa +4.9,3.1,1.5,0.1,Iris-setosa +5.0,3.2,1.2,0.2,Iris-setosa +5.5,3.5,1.3,0.2,Iris-setosa +4.9,3.1,1.5,0.1,Iris-setosa +4.4,3.0,1.3,0.2,Iris-setosa +5.1,3.4,1.5,0.2,Iris-setosa +5.0,3.5,1.3,0.3,Iris-setosa +4.5,2.3,1.3,0.3,Iris-setosa +4.4,3.2,1.3,0.2,Iris-setosa +5.0,3.5,1.6,0.6,Iris-setosa +5.1,3.8,1.9,0.4,Iris-setosa +4.8,3.0,1.4,0.3,Iris-setosa +5.1,3.8,1.6,0.2,Iris-setosa +4.6,3.2,1.4,0.2,Iris-setosa +5.3,3.7,1.5,0.2,Iris-setosa +5.0,3.3,1.4,0.2,Iris-setosa +7.0,3.2,4.7,1.4,Iris-versicolor +6.4,3.2,4.5,1.5,Iris-versicolor +6.9,3.1,4.9,1.5,Iris-versicolor +5.5,2.3,4.0,1.3,Iris-versicolor +6.5,2.8,4.6,1.5,Iris-versicolor +5.7,2.8,4.5,1.3,Iris-versicolor +6.3,3.3,4.7,1.6,Iris-versicolor +4.9,2.4,3.3,1.0,Iris-versicolor +6.6,2.9,4.6,1.3,Iris-versicolor +5.2,2.7,3.9,1.4,Iris-versicolor +5.0,2.0,3.5,1.0,Iris-versicolor +5.9,3.0,4.2,1.5,Iris-versicolor +6.0,2.2,4.0,1.0,Iris-versicolor +6.1,2.9,4.7,1.4,Iris-versicolor +5.6,2.9,3.6,1.3,Iris-versicolor +6.7,3.1,4.4,1.4,Iris-versicolor +5.6,3.0,4.5,1.5,Iris-versicolor +5.8,2.7,4.1,1.0,Iris-versicolor +6.2,2.2,4.5,1.5,Iris-versicolor +5.6,2.5,3.9,1.1,Iris-versicolor +5.9,3.2,4.8,1.8,Iris-versicolor +6.1,2.8,4.0,1.3,Iris-versicolor +6.3,2.5,4.9,1.5,Iris-versicolor +6.1,2.8,4.7,1.2,Iris-versicolor +6.4,2.9,4.3,1.3,Iris-versicolor +6.6,3.0,4.4,1.4,Iris-versicolor +6.8,2.8,4.8,1.4,Iris-versicolor +6.7,3.0,5.0,1.7,Iris-versicolor +6.0,2.9,4.5,1.5,Iris-versicolor +5.7,2.6,3.5,1.0,Iris-versicolor +5.5,2.4,3.8,1.1,Iris-versicolor +5.5,2.4,3.7,1.0,Iris-versicolor +5.8,2.7,3.9,1.2,Iris-versicolor +6.0,2.7,5.1,1.6,Iris-versicolor +5.4,3.0,4.5,1.5,Iris-versicolor +6.0,3.4,4.5,1.6,Iris-versicolor +6.7,3.1,4.7,1.5,Iris-versicolor +6.3,2.3,4.4,1.3,Iris-versicolor +5.6,3.0,4.1,1.3,Iris-versicolor +5.5,2.5,4.0,1.3,Iris-versicolor +5.5,2.6,4.4,1.2,Iris-versicolor +6.1,3.0,4.6,1.4,Iris-versicolor +5.8,2.6,4.0,1.2,Iris-versicolor +5.0,2.3,3.3,1.0,Iris-versicolor +5.6,2.7,4.2,1.3,Iris-versicolor +5.7,3.0,4.2,1.2,Iris-versicolor +5.7,2.9,4.2,1.3,Iris-versicolor +6.2,2.9,4.3,1.3,Iris-versicolor +5.1,2.5,3.0,1.1,Iris-versicolor +5.7,2.8,4.1,1.3,Iris-versicolor +6.3,3.3,6.0,2.5,Iris-virginica +5.8,2.7,5.1,1.9,Iris-virginica +7.1,3.0,5.9,2.1,Iris-virginica +6.3,2.9,5.6,1.8,Iris-virginica +6.5,3.0,5.8,2.2,Iris-virginica +7.6,3.0,6.6,2.1,Iris-virginica +4.9,2.5,4.5,1.7,Iris-virginica +7.3,2.9,6.3,1.8,Iris-virginica +6.7,2.5,5.8,1.8,Iris-virginica +7.2,3.6,6.1,2.5,Iris-virginica +6.5,3.2,5.1,2.0,Iris-virginica +6.4,2.7,5.3,1.9,Iris-virginica +6.8,3.0,5.5,2.1,Iris-virginica +5.7,2.5,5.0,2.0,Iris-virginica +5.8,2.8,5.1,2.4,Iris-virginica +6.4,3.2,5.3,2.3,Iris-virginica +6.5,3.0,5.5,1.8,Iris-virginica +7.7,3.8,6.7,2.2,Iris-virginica +7.7,2.6,6.9,2.3,Iris-virginica +6.0,2.2,5.0,1.5,Iris-virginica +6.9,3.2,5.7,2.3,Iris-virginica +5.6,2.8,4.9,2.0,Iris-virginica +7.7,2.8,6.7,2.0,Iris-virginica +6.3,2.7,4.9,1.8,Iris-virginica +6.7,3.3,5.7,2.1,Iris-virginica +7.2,3.2,6.0,1.8,Iris-virginica +6.2,2.8,4.8,1.8,Iris-virginica +6.1,3.0,4.9,1.8,Iris-virginica +6.4,2.8,5.6,2.1,Iris-virginica +7.2,3.0,5.8,1.6,Iris-virginica +7.4,2.8,6.1,1.9,Iris-virginica +7.9,3.8,6.4,2.0,Iris-virginica +6.4,2.8,5.6,2.2,Iris-virginica +6.3,2.8,5.1,1.5,Iris-virginica +6.1,2.6,5.6,1.4,Iris-virginica +7.7,3.0,6.1,2.3,Iris-virginica +6.3,3.4,5.6,2.4,Iris-virginica +6.4,3.1,5.5,1.8,Iris-virginica +6.0,3.0,4.8,1.8,Iris-virginica +6.9,3.1,5.4,2.1,Iris-virginica +6.7,3.1,5.6,2.4,Iris-virginica +6.9,3.1,5.1,2.3,Iris-virginica +5.8,2.7,5.1,1.9,Iris-virginica +6.8,3.2,5.9,2.3,Iris-virginica +6.7,3.3,5.7,2.5,Iris-virginica +6.7,3.0,5.2,2.3,Iris-virginica +6.3,2.5,5.0,1.9,Iris-virginica +6.5,3.0,5.2,2.0,Iris-virginica +6.2,3.4,5.4,2.3,Iris-virginica +5.9,3.0,5.1,1.8,Iris-virginica +% +% +% diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/jobExample.kf b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/jobExample.kf new file mode 100644 index 00000000..7b2da596 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/jobExample.kf @@ -0,0 +1,139 @@ +{ + "flow_name" : "jobExample", + "steps" : [ + { + "class" : "weka.knowledgeflow.steps.SetVariables", + "properties" : { + "dynamicVarsInternalRep" : "fname@a@afiletoload@v@v@@vv@@", + "name" : "SetVariables", + "varsInternalRep" : "" + }, + "connections" : { + "environment" : [ + "StorePropertiesInEnvironment" + ] + }, + "coordinates" : "266,220" + }, + { + "class" : "weka.knowledgeflow.steps.DataGrid", + "properties" : { + "data" : "@relation DataGrid\n\n@attribute fname string\n@attribute config string\n@attribute repTree string\n\n@data\nweka/gui/knowledgeflow/templates/iris.arff,'weka.classifiers.bayes.NaiveBayes -D',?\nweka/gui/knowledgeflow/templates/credit-g.arff,'.Bagging -print',2", + "name" : "DataGrid" + }, + "connections" : { + "instance" : [ + "SetVariables" + ] + }, + "coordinates" : "34,221" + }, + { + "class" : "weka.knowledgeflow.steps.Job", + "properties" : { + "flowFile" : "weka/gui/knowledgeflow/templates/jobSubFlow.kf", + "name" : "Job" + }, + "connections" : { + "jobSuccess" : [ + "GetDataFromResult" + ] + }, + "coordinates" : "386,351" + }, + { + "class" : "weka.knowledgeflow.steps.StorePropertiesInEnvironment", + "properties" : { + "name" : "StorePropertiesInEnvironment", + "propsInternalRep" : "config@a@aZeroR@a@a @a@a @@vv@@repTree@a@aZeroR@a@aclassifier.maxDepth@a@a @@vv@@" + }, + "connections" : { + "environment" : [ + "Job" + ] + }, + "coordinates" : "465,218" + }, + { + "class" : "weka.knowledgeflow.steps.GetDataFromResult", + "properties" : { + "name" : "GetDataFromResult" + }, + "connections" : { + "text" : [ + "TextViewer" + ] + }, + "coordinates" : "197,352" + }, + { + "class" : "weka.knowledgeflow.steps.TextViewer", + "properties" : { + "name" : "TextViewer" + }, + "connections" : { + }, + "coordinates" : "21,353" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note6", + "noteText" : "NOTE: this flow is configured to run out of the box. It processes ARFF files as resources loaded
from the classpath. It demonstrates how to dynamically parameterize a flow at runtime." + }, + "connections" : { + }, + "coordinates" : "222,4" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note", + "noteText" : "Define some data to \nparameterize the Job's\nsub-flow with. You could \nalso use a Loader step \nto load a file containing \nparamteter/variable values.\nEach instance output by this\nstep contains variable and\nparameter values that are\nset/stored by the SetVariables\nand StorePropertiesInEnvironment\nsteps respectively." + }, + "connections" : { + }, + "coordinates" : "12,25" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note7", + "noteText" : "Set environment variables based\non the values stored in attributes\nof the incoming instance objects." + }, + "connections" : { + }, + "coordinates" : "232,159" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note8", + "noteText" : "Store property values in the environment\nbased on the values stored in attributes\nof the incoming instance objects. These\nproperty values can be used to set option\nvalues for scheme-based steps in the\nsub-flow run by the Job step. This is \nparticularly useful as the schemes used\nin scheme-based steps typically do not\naccept environment variables. Click the\n\"About\" button in the step's editor dialog\nfor more information." + }, + "connections" : { + }, + "coordinates" : "535,96" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note9", + "noteText" : "Job executes another flow as\nan atomic unit. It passes in \nenvironment variables and property\nsettings for the sub-flow to use. Open\nthe editor dialog for Job and click\n\"Edit sub-flow\" to see the flow\nthat wil be executed." + }, + "connections" : { + }, + "coordinates" : "464,346" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note10", + "noteText" : "Get results stored by the\nWriteDataToResult step\nin the Job's sub-flow." + }, + "connections" : { + }, + "coordinates" : "166,446" + } + ] +} diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/jobSubFlow.kf b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/jobSubFlow.kf new file mode 100644 index 00000000..fe2ee58a --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/jobSubFlow.kf @@ -0,0 +1,148 @@ +{ + "flow_name" : "jobSubFlow", + "steps" : [ + { + "class" : "weka.knowledgeflow.steps.Loader", + "properties" : { + "loader" : { + "type" : "loader", + "class" : "weka.core.converters.ArffLoader", + "filePath" : "${filetoload}", + "useRelativePath" : false + }, + "name" : "ArffLoader" + }, + "connections" : { + "dataSet" : [ + "TextViewer", + "ClassAssigner" + ] + }, + "coordinates" : "37,89" + }, + { + "class" : "weka.knowledgeflow.steps.TextViewer", + "properties" : { + "name" : "TextViewer" + }, + "connections" : { + "text" : [ + "WriteToWekaLog" + ] + }, + "coordinates" : "237,89" + }, + { + "class" : "weka.knowledgeflow.steps.WriteWekaLog", + "properties" : { + "incrementalLoggingFrequency" : "1000", + "loggingLevel" : { + "type" : "enumHelper", + "class" : "weka.knowledgeflow.LoggingLevel", + "value" : "Basic" + }, + "name" : "WriteToWekaLog" + }, + "connections" : { + }, + "coordinates" : "437,89" + }, + { + "class" : "weka.knowledgeflow.steps.ClassAssigner", + "properties" : { + "classColumn" : "/last", + "name" : "ClassAssigner" + }, + "connections" : { + "dataSet" : [ + "TrainingSetMaker" + ] + }, + "coordinates" : "37,209" + }, + { + "class" : "weka.knowledgeflow.steps.TrainingSetMaker", + "properties" : { + "name" : "TrainingSetMaker" + }, + "connections" : { + "trainingSet" : [ + "ZeroR" + ] + }, + "coordinates" : "237,209" + }, + { + "class" : "weka.knowledgeflow.steps.Classifier", + "properties" : { + "classifier" : { + "type" : "optionHandler", + "class" : "weka.classifiers.rules.ZeroR", + "options" : "" + }, + "loadClassifierFileName" : "", + "name" : "ZeroR", + "resetIncrementalClassifier" : false, + "updateIncrementalClassifier" : true + }, + "connections" : { + "text" : [ + "WriteToWekaLog", + "WriteDataToResult" + ] + }, + "coordinates" : "437,209" + }, + { + "class" : "weka.knowledgeflow.steps.SetPropertiesFromEnvironment", + "properties" : { + "name" : "SetPropertiesFromEnvironment" + }, + "connections" : { + "info" : [ + "ZeroR" + ] + }, + "coordinates" : "317,329" + }, + { + "class" : "weka.knowledgeflow.steps.WriteDataToResult", + "properties" : { + "name" : "WriteDataToResult" + }, + "connections" : { + }, + "coordinates" : "437,329" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note", + "noteText" : "ArffLoader uses an environment\nvariable to define the file to load." + }, + "connections" : { + }, + "coordinates" : "40,40" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note2", + "noteText" : "We use a ZeroR classifier here,\nbut it actually becomes NaiveBayes\nand Bagging at runtime due to properties\nset by the StetPropertiesFromEnvironment\nstep." + }, + "connections" : { + }, + "coordinates" : "514,215" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note3", + "noteText" : "SetPropertiesFromEnvironment\nchecks the environment to see\nif there are any properties associated\nwith the name of the step it is connected\nto. It then sets these properties (if any)\non the connected step." + }, + "connections" : { + }, + "coordinates" : "50,324" + } + ] +} diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/learnAndSaveModel.kf b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/learnAndSaveModel.kf new file mode 100644 index 00000000..529e7334 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/learnAndSaveModel.kf @@ -0,0 +1,163 @@ +{ + "flow_name" : "learnAndSaveModel", + "steps" : [ + { + "class" : "weka.knowledgeflow.steps.Loader", + "properties" : { + "loader" : { + "type" : "loader", + "class" : "weka.core.converters.ArffLoader", + "filePath" : "weka/gui/beans/templates/credit-g.arff", + "useRelativePath" : false + }, + "name" : "ArffLoader" + }, + "connections" : { + "dataSet" : [ + "ClassAssigner" + ] + }, + "coordinates" : "79,80" + }, + { + "class" : "weka.knowledgeflow.steps.ClassAssigner", + "properties" : { + "classColumn" : "last", + "name" : "ClassAssigner" + }, + "connections" : { + "dataSet" : [ + "TrainingSetMaker" + ] + }, + "coordinates" : "239,80" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note", + "noteText" : "Double click to configure me\nwith an ARFF file" + }, + "connections" : { + }, + "coordinates" : "26,178" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note2", + "noteText" : "Double click to\nspecify the class\nattribute" + }, + "connections" : { + }, + "coordinates" : "232,178" + }, + { + "class" : "weka.knowledgeflow.steps.Classifier", + "properties" : { + "classifier" : { + "type" : "optionHandler", + "class" : "weka.classifiers.trees.J48", + "options" : "-C 0.25 -M 2" + }, + "loadClassifierFileName" : "", + "name" : "J48", + "resetIncrementalClassifier" : false, + "updateIncrementalClassifier" : true + }, + "connections" : { + "batchClassifier" : [ + "SerializedModelSaver" + ], + "text" : [ + "TextViewer" + ] + }, + "coordinates" : "281,295" + }, + { + "class" : "weka.knowledgeflow.steps.TrainingSetMaker", + "properties" : { + "name" : "TrainingSetMaker" + }, + "connections" : { + "trainingSet" : [ + "J48" + ] + }, + "coordinates" : "439,80" + }, + { + "class" : "weka.knowledgeflow.steps.SerializedModelSaver", + "properties" : { + "filenamePrefix" : "exampleModel", + "includeRelationNameInFilename" : false, + "incrementalSaveSchedule" : 0, + "name" : "SerializedModelSaver", + "outputDirectory" : "${user.home}" + }, + "connections" : { + }, + "coordinates" : "521,295" + }, + { + "class" : "weka.knowledgeflow.steps.TextViewer", + "properties" : { + "name" : "TextViewer" + }, + "connections" : { + }, + "coordinates" : "41,295" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note3", + "noteText" : "Make the dataset into\na training set" + }, + "connections" : { + }, + "coordinates" : "513,98" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note4", + "noteText" : "Learn a decision tree\n(double click to configure\noptions)" + }, + "connections" : { + }, + "coordinates" : "246,385" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note5", + "noteText" : "Double click to configure\na filename prefix and\ndirectory to save the\nmodel to" + }, + "connections" : { + }, + "coordinates" : "597,302" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note6", + "noteText" : "Collects the textual\ndescription of the\nmodel." + }, + "connections" : { + }, + "coordinates" : "26,381" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note7", + "noteText" : "NOTE: this flow is configured to run out of the box. It loads an ARFF file as a resource from the classpath. If you want \nto use your own data, edit the ArffLoader. The model is saved as \"exampleModelJ48_1_1.model\" to your home directory\n(Java property \"user.home\")." + }, + "connections" : { + }, + "coordinates" : "31,6" + } + ] +} diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/predictionBoundaries.kf b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/predictionBoundaries.kf new file mode 100644 index 00000000..15f4f24a --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/predictionBoundaries.kf @@ -0,0 +1,150 @@ +{ + "flow_name" : "Prediction boundaries", + "steps" : [ + { + "class" : "weka.knowledgeflow.steps.Loader", + "properties" : { + "loader" : { + "type" : "loader", + "class" : "weka.core.converters.ArffLoader", + "filePath" : "weka/gui/knowledgeflow/templates/iris.arff", + "useRelativePath" : false + }, + "name" : "ArffLoader" + }, + "connections" : { + "dataSet" : [ + "ClassAssigner" + ] + }, + "coordinates" : "104,60" + }, + { + "class" : "weka.knowledgeflow.steps.BoundaryPlotter", + "properties" : { + "XAttName" : "petallength", + "YAttName" : "petalwidth", + "baseForSampling" : "2", + "computeMaxRowsInParallel" : 10, + "imageHeight" : 400, + "imageWidth" : 400, + "kernelBandwidth" : "3", + "name" : "BoundaryPlotter", + "numLocationsPerPixel" : "2", + "plotTrainingData" : true + }, + "connections" : { + "image" : [ + "ImageSaver" + ] + }, + "coordinates" : "277,254" + }, + { + "class" : "weka.knowledgeflow.steps.ClassAssigner", + "properties" : { + "classColumn" : "/last", + "name" : "ClassAssigner" + }, + "connections" : { + "dataSet" : [ + "BoundaryPlotter" + ] + }, + "coordinates" : "104,254" + }, + { + "class" : "weka.knowledgeflow.steps.Classifier", + "properties" : { + "classifier" : { + "type" : "optionHandler", + "class" : "weka.classifiers.functions.Logistic", + "options" : "-R 1.0E-8 -M -1" + }, + "loadClassifierFileName" : "", + "name" : "Logistic", + "resetIncrementalClassifier" : false, + "updateIncrementalClassifier" : true + }, + "connections" : { + "info" : [ + "BoundaryPlotter" + ] + }, + "coordinates" : "446,62" + }, + { + "class" : "weka.knowledgeflow.steps.Clusterer", + "properties" : { + "clusterer" : { + "type" : "optionHandler", + "class" : "weka.clusterers.EM", + "options" : "-I 100 -N 5 -X 10 -max -1 -ll-cv 1.0E-6 -ll-iter 1.0E-6 -M 1.0E-6 -K 10 -num-slots 1 -S 100" + }, + "loadClustererFileName" : "", + "name" : "EM" + }, + "connections" : { + "info" : [ + "BoundaryPlotter" + ] + }, + "coordinates" : "277,60" + }, + { + "class" : "weka.knowledgeflow.steps.ImageSaver", + "properties" : { + "file" : "${user.home}/bp${image_count}.png", + "format" : { + "type" : "enumHelper", + "class" : "weka.knowledgeflow.steps.ImageSaver$ImageFormat", + "value" : "DEFAULT" + }, + "name" : "ImageSaver" + }, + "connections" : { + }, + "coordinates" : "501,254" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note6", + "noteText" : "NOTE: this flow is configured to run out of the box. It loads an ARFF file as a resource from the classpath. If you want \nto use your own data, edit the ArffLoader." + }, + "connections" : { + }, + "coordinates" : "23,11" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note2", + "noteText" : "Double click to\nspecify the class\nattribute" + }, + "connections" : { + }, + "coordinates" : "94,342" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note", + "noteText" : "Double click to configure\nboundary plotting options.\nRight click and select\n\"Show plots\" to see\nresults." + }, + "connections" : { + }, + "coordinates" : "240,346" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note7", + "noteText" : "Saves each rendered plot\nas a png file named\nbp${image_count}.png,\nwhere the variable image_count\nis incremented for each subsequent\nplot." + }, + "connections" : { + }, + "coordinates" : "465,338" + } + ] +} diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/saveCharts.kf b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/saveCharts.kf new file mode 100644 index 00000000..6fd02896 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/saveCharts.kf @@ -0,0 +1,314 @@ +{ + "flow_name" : "saveCharts", + "steps" : [ + { + "class" : "weka.knowledgeflow.steps.Loader", + "properties" : { + "loader" : { + "type" : "loader", + "class" : "weka.core.converters.ArffLoader", + "filePath" : "weka/gui/beans/templates/credit-g.arff", + "useRelativePath" : false + }, + "name" : "ArffLoader" + }, + "connections" : { + "dataSet" : [ + "DataVisualizer", + "AttributeSummarizer" + ] + }, + "coordinates" : "94,97" + }, + { + "class" : "weka.knowledgeflow.steps.DataVisualizer", + "properties" : { + "name" : "DataVisualizer", + "offscreenAdditionalOpts" : "-color=/last", + "offscreenHeight" : "400", + "offscreenRendererName" : "JFreeChart Chart Renderer", + "offscreenWidth" : "500", + "offscreenXAxis" : "age", + "offscreenYAxis" : "" + }, + "connections" : { + "image" : [ + "ImageSaver2" + ] + }, + "coordinates" : "254,97" + }, + { + "class" : "weka.knowledgeflow.steps.AttributeSummarizer", + "properties" : { + "name" : "AttributeSummarizer", + "offscreenAdditionalOpts" : "", + "offscreenHeight" : "400", + "offscreenRendererName" : "JFreeChart Chart Renderer", + "offscreenWidth" : "500", + "offscreenXAxis" : "" + }, + "connections" : { + "image" : [ + "ImageSaver" + ] + }, + "coordinates" : "254,221" + }, + { + "class" : "weka.knowledgeflow.steps.ImageSaver", + "properties" : { + "file" : "${user.home}/chart2.png", + "format" : { + "type" : "enumHelper", + "class" : "weka.knowledgeflow.steps.ImageSaver$ImageFormat", + "value" : "DEFAULT" + }, + "name" : "ImageSaver" + }, + "connections" : { + }, + "coordinates" : "414,221" + }, + { + "class" : "weka.knowledgeflow.steps.ImageSaver", + "properties" : { + "file" : "${user.home}/chart1.png", + "format" : { + "type" : "enumHelper", + "class" : "weka.knowledgeflow.steps.ImageSaver$ImageFormat", + "value" : "DEFAULT" + }, + "name" : "ImageSaver2" + }, + "connections" : { + }, + "coordinates" : "414,97" + }, + { + "class" : "weka.knowledgeflow.steps.ClassAssigner", + "properties" : { + "classColumn" : "last", + "name" : "ClassAssigner" + }, + "connections" : { + "dataSet" : [ + "ClassValuePicker" + ] + }, + "coordinates" : "14,353" + }, + { + "class" : "weka.knowledgeflow.steps.ClassValuePicker", + "properties" : { + "classValue" : "good", + "name" : "ClassValuePicker" + }, + "connections" : { + "dataSet" : [ + "CrossValidationFoldMaker" + ] + }, + "coordinates" : "174,353" + }, + { + "class" : "weka.knowledgeflow.steps.CrossValidationFoldMaker", + "properties" : { + "name" : "CrossValidationFoldMaker", + "numFolds" : "10", + "preserveOrder" : false, + "seed" : "1" + }, + "connections" : { + "trainingSet" : [ + "NaiveBayes" + ], + "testSet" : [ + "NaiveBayes" + ] + }, + "coordinates" : "334,353" + }, + { + "class" : "weka.knowledgeflow.steps.Classifier", + "properties" : { + "classifier" : { + "type" : "optionHandler", + "class" : "weka.classifiers.bayes.NaiveBayes", + "options" : "" + }, + "loadClassifierFileName" : "", + "name" : "NaiveBayes", + "resetIncrementalClassifier" : false, + "updateIncrementalClassifier" : true + }, + "connections" : { + "batchClassifier" : [ + "ClassifierPerformanceEvaluator" + ] + }, + "coordinates" : "534,353" + }, + { + "class" : "weka.knowledgeflow.steps.ClassifierPerformanceEvaluator", + "properties" : { + "errorPlotPointSizeProportionalToMargin" : false, + "evaluationMetricsToOutput" : "Correct,Incorrect,Kappa,Total cost,Average cost,KB relative,KB information,Correlation,Complexity 0,Complexity scheme,Complexity improvement,MAE,RMSE,RAE,RRSE,Coverage,Region size,TP rate,FP rate,Precision,Recall,F-measure,MCC,ROC area,PRC area", + "name" : "ClassifierPerformanceEvaluator" + }, + "connections" : { + "thresholdData" : [ + "ModelPerformanceChart" + ], + "visualizableError" : [ + "ModelPerformanceChart2" + ] + }, + "coordinates" : "694,353" + }, + { + "class" : "weka.knowledgeflow.steps.ModelPerformanceChart", + "properties" : { + "name" : "ModelPerformanceChart", + "offscreenAdditionalOpts" : "", + "offscreenHeight" : "400", + "offscreenRendererName" : "JFreeChart Chart Renderer", + "offscreenWidth" : "500", + "offscreenXAxis" : "", + "offscreenYAxis" : "" + }, + "connections" : { + "image" : [ + "ImageSaver3" + ] + }, + "coordinates" : "694,219" + }, + { + "class" : "weka.knowledgeflow.steps.ModelPerformanceChart", + "properties" : { + "name" : "ModelPerformanceChart2", + "offscreenAdditionalOpts" : "", + "offscreenHeight" : "400", + "offscreenRendererName" : "JFreeChart Chart Renderer", + "offscreenWidth" : "500", + "offscreenXAxis" : "age", + "offscreenYAxis" : "credit_amount" + }, + "connections" : { + "image" : [ + "ImageSaver4" + ] + }, + "coordinates" : "519,221" + }, + { + "class" : "weka.knowledgeflow.steps.Loader", + "properties" : { + "loader" : { + "type" : "loader", + "class" : "weka.core.converters.ArffLoader", + "filePath" : "weka/gui/beans/templates/credit-g.arff", + "useRelativePath" : false + }, + "name" : "ArffLoader2" + }, + "connections" : { + "dataSet" : [ + "ClassAssigner" + ] + }, + "coordinates" : "14,207" + }, + { + "class" : "weka.knowledgeflow.steps.ImageSaver", + "properties" : { + "file" : "${user.home}/chart3.png", + "format" : { + "type" : "enumHelper", + "class" : "weka.knowledgeflow.steps.ImageSaver$ImageFormat", + "value" : "DEFAULT" + }, + "name" : "ImageSaver3" + }, + "connections" : { + }, + "coordinates" : "694,95" + }, + { + "class" : "weka.knowledgeflow.steps.ImageSaver", + "properties" : { + "file" : "${user.home}/chart4.png", + "format" : { + "type" : "enumHelper", + "class" : "weka.knowledgeflow.steps.ImageSaver$ImageFormat", + "value" : "DEFAULT" + }, + "name" : "ImageSaver4" + }, + "connections" : { + }, + "coordinates" : "519,97" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note", + "noteText" : "Errors scatter plot" + }, + "connections" : { + }, + "coordinates" : "487,312" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note2", + "noteText" : "ROC curve" + }, + "connections" : { + }, + "coordinates" : "624,226" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note3", + "noteText" : "German credit\ndata" + }, + "connections" : { + }, + "coordinates" : "84,194" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note4", + "noteText" : "Bar chart for \"employment\"" + }, + "connections" : { + }, + "coordinates" : "209,316" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note5", + "noteText" : "Scatter plot of\n\"age\" vs \"credit_amount\"" + }, + "connections" : { + }, + "coordinates" : "254,183" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note6", + "noteText" : "NOTE: this flow is configured to run out of the box. It loads an ARFF file as a resource from the classpath. If you want \nto use your own data, edit the ArffLoader and configure the chart components and image savers.

Charts are saved to png files in your home directory using Weka's built-in chart rendering. For pretty charts install the\n\"jfreechartOffscreenChartRenderer\" package using the package manager." + }, + "connections" : { + }, + "coordinates" : "22,4" + } + ] +} diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/templates.props b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/templates.props new file mode 100644 index 00000000..d6af17bf --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/templates.props @@ -0,0 +1 @@ +*resources*=[weka.knowledgeflow.templates|Cross validation|weka/gui/knowledgeflow/templates/cvTemplate.kf],[weka.knowledgeflow.templates|Learn and save a model|weka/gui/knowledgeflow/templates/learnAndSaveModel.kf],[weka.knowledgeflow.templates|ROC curves for two classifiers|weka/gui/knowledgeflow/templates/ROCcurves.kf],[weka.knowledgeflow.templates|Learn and evaluate naive Bayes incrementally|weka/gui/knowledgeflow/templates/incrementalLearning.kf],[weka.knowledgeflow.templates|Compare two clusterers|weka/gui/knowledgeflow/templates/twoClusterers.kf],[weka.knowledgeflow.templates|Two attribute selection schemes|weka/gui/knowledgeflow/templates/twoAttSelSchemes.kf],[weka.knowledgeflow.templates|Save various charts to files|weka/gui/knowledgeflow/templates/saveCharts.kf],[weka.knowledgeflow.templates|Visualize prediction boundaries|weka/gui/knowledgeflow/templates/predictionBoundaries.kf],[weka.knowledgeflow.templates|Parameterizing a Job|weka/gui/knowledgeflow/templates/jobExample.kf] diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/twoAttSelSchemes.kf b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/twoAttSelSchemes.kf new file mode 100644 index 00000000..fc75ff34 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/twoAttSelSchemes.kf @@ -0,0 +1,217 @@ +{ + "flow_name" : "twoAttSelectionSchemes", + "steps" : [ + { + "class" : "weka.knowledgeflow.steps.ASEvaluator", + "properties" : { + "evaluator" : { + "type" : "optionHandler", + "class" : "weka.attributeSelection.CfsSubsetEval", + "options" : "-P 1 -E 1" + }, + "name" : "CfsSubsetEval", + "treatXValFoldsSeparately" : false + }, + "connections" : { + "text" : [ + "TextViewer" + ], + "testSet" : [ + "TextViewer2" + ] + }, + "coordinates" : "507,85" + }, + { + "class" : "weka.knowledgeflow.steps.ASSearchStrategy", + "properties" : { + "name" : "GreedyStepwise", + "searchStrategy" : { + "type" : "optionHandler", + "class" : "weka.attributeSelection.GreedyStepwise", + "options" : "-T -1.7976931348623157E308 -N -1 -num-slots 1" + } + }, + "connections" : { + "info" : [ + "CfsSubsetEval" + ] + }, + "coordinates" : "659,86" + }, + { + "class" : "weka.knowledgeflow.steps.Loader", + "properties" : { + "loader" : { + "type" : "loader", + "class" : "weka.core.converters.ArffLoader", + "filePath" : "weka/gui/knowledgeflow/templates/iris.arff", + "useRelativePath" : false + }, + "name" : "ArffLoader" + }, + "connections" : { + "dataSet" : [ + "ClassAssigner" + ] + }, + "coordinates" : "32,193" + }, + { + "class" : "weka.knowledgeflow.steps.TextViewer", + "properties" : { + "name" : "TextViewer" + }, + "connections" : { + }, + "coordinates" : "650,186" + }, + { + "class" : "weka.knowledgeflow.steps.CrossValidationFoldMaker", + "properties" : { + "name" : "CrossValidationFoldMaker", + "numFolds" : "5", + "preserveOrder" : false, + "seed" : "1" + }, + "connections" : { + "trainingSet" : [ + "CfsSubsetEval", + "InfoGainAttributeEval" + ], + "testSet" : [ + "CfsSubsetEval", + "InfoGainAttributeEval" + ] + }, + "coordinates" : "362,193" + }, + { + "class" : "weka.knowledgeflow.steps.TextViewer", + "properties" : { + "name" : "TextViewer2" + }, + "connections" : { + }, + "coordinates" : "335,85" + }, + { + "class" : "weka.knowledgeflow.steps.ClassAssigner", + "properties" : { + "classColumn" : "/last", + "name" : "ClassAssigner" + }, + "connections" : { + "dataSet" : [ + "CrossValidationFoldMaker" + ] + }, + "coordinates" : "200,193" + }, + { + "class" : "weka.knowledgeflow.steps.ASEvaluator", + "properties" : { + "evaluator" : { + "type" : "optionHandler", + "class" : "weka.attributeSelection.InfoGainAttributeEval", + "options" : "" + }, + "name" : "InfoGainAttributeEval", + "treatXValFoldsSeparately" : false + }, + "connections" : { + "text" : [ + "TextViewer" + ] + }, + "coordinates" : "509,288" + }, + { + "class" : "weka.knowledgeflow.steps.ASSearchStrategy", + "properties" : { + "name" : "Ranker", + "searchStrategy" : { + "type" : "optionHandler", + "class" : "weka.attributeSelection.Ranker", + "options" : "-T -1.7976931348623157E308 -N -1" + } + }, + "connections" : { + "info" : [ + "InfoGainAttributeEval" + ] + }, + "coordinates" : "659,288" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note6", + "noteText" : "NOTE: this flow is configured to run out of the box. It loads an ARFF file as a resource from the classpath. If you want \nto use your own data, edit the ArffLoader." + }, + "connections" : { + }, + "coordinates" : "26,3" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note", + "noteText" : "Double click to \nconfigure me with\nan ARFF file" + }, + "connections" : { + }, + "coordinates" : "12,282" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note2", + "noteText" : "Double click to\nspecify the class\nattribute" + }, + "connections" : { + }, + "coordinates" : "184,283" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note3", + "noteText" : "5-fold CV. Double \nclick to alter the\nnumber of folds." + }, + "connections" : { + }, + "coordinates" : "323,285" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note7", + "noteText" : "View the reduced\ntest fold data." + }, + "connections" : { + }, + "coordinates" : "207,97" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note8", + "noteText" : "CFS evaluation with forward selection search" + }, + "connections" : { + }, + "coordinates" : "472,57" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note9", + "noteText" : "Information gain attribute ranking" + }, + "connections" : { + }, + "coordinates" : "517,386" + } + ] +} diff --git a/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/twoClusterers.kf b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/twoClusterers.kf new file mode 100644 index 00000000..55c0fd42 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/knowledgeflow/templates/twoClusterers.kf @@ -0,0 +1,208 @@ +{ + "flow_name" : "twoClusterers", + "steps" : [ + { + "class" : "weka.knowledgeflow.steps.Loader", + "properties" : { + "loader" : { + "type" : "loader", + "class" : "weka.core.converters.ArffLoader", + "filePath" : "weka/gui/beans/templates/iris.arff", + "useRelativePath" : false + }, + "name" : "ArffLoader" + }, + "connections" : { + "dataSet" : [ + "Remove" + ] + }, + "coordinates" : "36,280" + }, + { + "class" : "weka.knowledgeflow.steps.Clusterer", + "properties" : { + "clusterer" : { + "type" : "optionHandler", + "class" : "weka.clusterers.EM", + "options" : "-I 100 -N -1 -X 10 -max -1 -ll-cv 1.0E-6 -ll-iter 1.0E-6 -M 1.0E-6 -K 10 -num-slots 1 -S 100" + }, + "loadClustererFileName" : "", + "name" : "EM" + }, + "connections" : { + "batchClusterer" : [ + "ClustererPerformanceEvaluator" + ] + }, + "coordinates" : "358,57" + }, + { + "class" : "weka.knowledgeflow.steps.ClustererPerformanceEvaluator", + "properties" : { + "name" : "ClustererPerformanceEvaluator" + }, + "connections" : { + "text" : [ + "TextViewer" + ] + }, + "coordinates" : "558,57" + }, + { + "class" : "weka.knowledgeflow.steps.TextViewer", + "properties" : { + "name" : "TextViewer" + }, + "connections" : { + }, + "coordinates" : "680,160" + }, + { + "class" : "weka.knowledgeflow.steps.TrainTestSplitMaker", + "properties" : { + "name" : "TrainTestSplitMaker", + "seed" : "1", + "trainPercent" : "66.0" + }, + "connections" : { + "trainingSet" : [ + "EM", + "MakeDensityBasedClusterer" + ], + "testSet" : [ + "EM", + "MakeDensityBasedClusterer" + ] + }, + "coordinates" : "200,160" + }, + { + "class" : "weka.knowledgeflow.steps.Clusterer", + "properties" : { + "clusterer" : { + "type" : "optionHandler", + "class" : "weka.clusterers.MakeDensityBasedClusterer", + "options" : "-M 1.0E-6 -W weka.clusterers.SimpleKMeans -- -init 0 -max-candidates 100 -periodic-pruning 10000 -min-density 2.0 -t1 -1.25 -t2 -1.0 -N 3 -A \"weka.core.EuclideanDistance -R first-last\" -I 500 -num-slots 1 -S 10" + }, + "loadClustererFileName" : "", + "name" : "MakeDensityBasedClusterer" + }, + "connections" : { + "batchClusterer" : [ + "ClustererPerformanceEvaluator2" + ] + }, + "coordinates" : "360,280" + }, + { + "class" : "weka.knowledgeflow.steps.ClustererPerformanceEvaluator", + "properties" : { + "name" : "ClustererPerformanceEvaluator2" + }, + "connections" : { + "text" : [ + "TextViewer" + ] + }, + "coordinates" : "560,280" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note", + "noteText" : "Double click to \nconfigure with \nan ARFF dataset." + }, + "connections" : { + }, + "coordinates" : "12,374" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note2", + "noteText" : "2/3 - 1/3 train-test\nsplit. Double click\nto change split\npercentage." + }, + "connections" : { + }, + "coordinates" : "157,255" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note3", + "noteText" : "EM clustering with\ncross-validation to\nchoose the best\nnumber of clusters." + }, + "connections" : { + }, + "coordinates" : "358,147" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note4", + "noteText" : "Fits Gaussian distributions\nto the clusters found by\nk-means. Double click to\nconfigure." + }, + "connections" : { + }, + "coordinates" : "306,373" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note5", + "noteText" : "Computes evaluation\nresults." + }, + "connections" : { + }, + "coordinates" : "532,376" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note6", + "noteText" : "Right click and\nselect \"Show results\"" + }, + "connections" : { + }, + "coordinates" : "652,263" + }, + { + "class" : "weka.knowledgeflow.steps.Filter", + "properties" : { + "filter" : { + "type" : "optionHandler", + "class" : "weka.filters.unsupervised.attribute.Remove", + "options" : "-R last" + }, + "name" : "Remove" + }, + "connections" : { + "dataSet" : [ + "TrainTestSplitMaker" + ] + }, + "coordinates" : "36,160" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note7", + "noteText" : "Remove the class column" + }, + "connections" : { + }, + "coordinates" : "9,136" + }, + { + "class" : "weka.knowledgeflow.steps.Note", + "properties" : { + "name" : "Note8", + "noteText" : "NOTE: this flow is configured to run out of the box. It loads an ARFF file as a resource from the classpath. If you want \nto use your own data, edit the ArffLoader." + }, + "connections" : { + }, + "coordinates" : "20,8" + } + ] +} diff --git a/workflow/apps/java/clustering/bin/weka/gui/scripting/FileScriptingPanel$1.class b/workflow/apps/java/clustering/bin/weka/gui/scripting/FileScriptingPanel$1.class new file mode 100644 index 00000000..586aceda Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/scripting/FileScriptingPanel$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/scripting/FileScriptingPanel$AboutAction.class b/workflow/apps/java/clustering/bin/weka/gui/scripting/FileScriptingPanel$AboutAction.class new file mode 100644 index 00000000..a2471fc9 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/scripting/FileScriptingPanel$AboutAction.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/scripting/FileScriptingPanel$BasicAction.class 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b/workflow/apps/java/clustering/bin/weka/gui/scripting/FileScriptingPanel.class new file mode 100644 index 00000000..cae45369 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/scripting/FileScriptingPanel.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/scripting/Groovy.props b/workflow/apps/java/clustering/bin/weka/gui/scripting/Groovy.props new file mode 100644 index 00000000..b7992f2b --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/scripting/Groovy.props @@ -0,0 +1,146 @@ +# Defines the syntax highlighting for Groovy +# +# Author: FracPete (fracpete at waikato dot ac dot nz) +# Version: $Revision: 5293 $ + +######## +# Font # +######## + +# the font name +FontName=monospaced + +# the font size +FontSize=12 + +############################################# +# Colors (R,G,B format can be used as well) # +############################################# + +# the font color +ForegroundColor=black + +# the background color +BackgroundColor=white + +# the color for keywords +KeywordColor=blue + +# the color for comments +CommentColor=gray + +# the color for strings +StringColor=red + +########## +# Syntax # +########## + +# whether the syntax highlighting etc is on or not (true|false) +Syntax=true + +# the number of spaces to use for indentation +Indentation=2 + +# the number of characters that a single tab represents +Tabs=2 + +# whether to use blanks instead of tabs (true|false) +UseBlanks=true + +# word delimiters +Delimiters=;:{}()[]+-/%<=>!&|^~* + +# delimiter for quoted strings/characters +QuoteDelimiters="' + +# the character to escape quotes +QuoteEscape=\\ + +# whether multi-line comments are enabled (true|false) +MultiLineComment=true + +# the start delimiter of a multi-line comment +MultiLineCommentStart=/* + +# the end delimiter of a multi-line comment +MultiLineCommentEnd=*/ + +# the start delimiter of a single-line comment +SingleLineCommentStart=// + +# whether to add matching block ends (true|false) +AddMatchingBlockEnd=true + +# the start of a block (e.g., "opening bracket") +BlockStart={ + +# the end of a block (e.g., "closing bracket") +BlockEnd=} + +# whether the keywords are case-sensitive (true|false) +CaseSensitive=true + +# the keywords +Keywords=\ + abstract,\ + assert,\ + boolean,\ + break,\ + byte,\ + byvalue,\ + case,\ + cast,\ + catch,\ + char,\ + class,\ + const,\ + continue,\ + def,\ + default,\ + do,\ + double,\ + else,\ + extends,\ + false,\ + final,\ + finally,\ + float,\ + for,\ + future,\ + generic,\ + goto,\ + if,\ + implements,\ + import,\ + inner,\ + instanceof,\ + int,\ + interface,\ + long,\ + native,\ + new,\ + null,\ + operator,\ + outer,\ + package,\ + private,\ + protected,\ + public,\ + rest,\ + return,\ + short,\ + static,\ + super,\ + switch,\ + synchronized,\ + this,\ + throw,\ + throws,\ + transient,\ + true,\ + try,\ + var,\ + void,\ + volatile,\ + while diff --git a/workflow/apps/java/clustering/bin/weka/gui/scripting/GroovyPanel.class b/workflow/apps/java/clustering/bin/weka/gui/scripting/GroovyPanel.class new file mode 100644 index 00000000..046056b9 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/scripting/GroovyPanel.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/scripting/GroovyScript$GroovyThread.class b/workflow/apps/java/clustering/bin/weka/gui/scripting/GroovyScript$GroovyThread.class new file mode 100644 index 00000000..fe3662a4 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/scripting/GroovyScript$GroovyThread.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/scripting/GroovyScript.class b/workflow/apps/java/clustering/bin/weka/gui/scripting/GroovyScript.class new file mode 100644 index 00000000..38916735 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/scripting/GroovyScript.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/scripting/Jython.props b/workflow/apps/java/clustering/bin/weka/gui/scripting/Jython.props new file mode 100644 index 00000000..e4cb8791 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/scripting/Jython.props @@ -0,0 +1,113 @@ +# Defines the syntax highlighting for Jython +# +# Author: FracPete (fracpete at waikato dot ac dot nz) +# Version: $Revision: 5293 $ + +######## +# Font # +######## + +# the font name +FontName=monospaced + +# the font size +FontSize=12 + +############################################# +# Colors (R,G,B format can be used as well) # +############################################# + +# the font color +ForegroundColor=black + +# the background color +BackgroundColor=white + +# the color for keywords +KeywordColor=blue + +# the color for comments +CommentColor=gray + +# the color for strings +StringColor=red + +########## +# Syntax # +########## + +# whether the syntax highlighting etc is on or not (true|false) +Syntax=true + +# the number of spaces to use for indentation instead of TAB +Indentation=4 + +# the number of characters that a single tab represents +Tabs=4 + +# whether to use blanks instead of tabs (true|false) +UseBlanks=true + +# word delimiters +Delimiters=;:{}()[]+-/%<=>!&|^~* + +# delimiter for quoted strings/characters +QuoteDelimiters="' + +# the character to escape quotes +QuoteEscape=\\ + +# whether multi-line comments are enabled (true|false) +MultiLineComment=true + +# the start delimiter of a multi-line comment +MultiLineCommentStart=""" + +# the end delimiter of a multi-line comment +MultiLineCommentEnd=""" + +# the start delimiter of a single-line comment +SingleLineCommentStart=# + +# whether to add matching block end (true|false) +AddMatchingBlockEnd=false + +# the start of a block (e.g., "opening bracket") +BlockStart= + +# the end of a block (e.g., "closing bracket") +BlockEnd= + +# whether the keywords are case-sensitive (true|false) +CaseSensitive=true + +# the keywords +Keywords=\ + and,\ + assert,\ + break,\ + class,\ + continue,\ + def,\ + del,\ + elif,\ + else,\ + except,\ + exec,\ + finally,\ + for,\ + from,\ + global,\ + if,\ + import,\ + in,\ + is,\ + lambda,\ + not,\ + or,\ + pass,\ + print,\ + raise,\ + return,\ + try,\ + while,\ diff --git a/workflow/apps/java/clustering/bin/weka/gui/scripting/JythonPanel.class b/workflow/apps/java/clustering/bin/weka/gui/scripting/JythonPanel.class new file mode 100644 index 00000000..b36bb2a7 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/scripting/JythonPanel.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/scripting/JythonScript$JythonThread.class b/workflow/apps/java/clustering/bin/weka/gui/scripting/JythonScript$JythonThread.class new file mode 100644 index 00000000..b608a786 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/scripting/JythonScript$JythonThread.class differ diff --git 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Author: FracPete (fracpete at waikato dot ac dot nz) +# Version: $Revision: 14490 $ + +# the font color (can use R,G,B format) +FontColor=black + +# the background color (can use R,G,B format) +# leaving this empty uses the platform's default background +# Note: on Mac OS X, using the default background results in a black background when +# saving the tree to a file! See the following thread on the Weka mailing list: +# https://list.scms.waikato.ac.nz/mailman/htdig/wekalist/2009-January/015661.html +BackgroundColor= + +# the node color (can use R,G,B format) +NodeColor=lightGray + +# the line color (can use R,G,B format) +LineColor=black + +# the color of the zoombox (can use R,G,B format) +ZoomBoxColor=black + +# the XOR mode color for the zoombox (can use R,G,B format) +ZoomBoxXORColor=white + +# whether to show the border or not +ShowBorder=true diff --git a/workflow/apps/java/clustering/bin/weka/gui/visualize/AttributePanel$1.class b/workflow/apps/java/clustering/bin/weka/gui/visualize/AttributePanel$1.class new file mode 100644 index 00000000..4a4152de Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/visualize/AttributePanel$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/visualize/AttributePanel$2.class b/workflow/apps/java/clustering/bin/weka/gui/visualize/AttributePanel$2.class new file mode 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index 00000000..03e4e461 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/gui/visualize/ThresholdVisualizePanel.class differ diff --git a/workflow/apps/java/clustering/bin/weka/gui/visualize/Visualize.props b/workflow/apps/java/clustering/bin/weka/gui/visualize/Visualize.props new file mode 100644 index 00000000..c7ab5063 --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/gui/visualize/Visualize.props @@ -0,0 +1,48 @@ +# Properties for visualization +# +# Version: $Revision: 14589 $ + +# Maximum precision for numeric values +weka.gui.visualize.precision=10 + +# Colour for the axis in the 2D plot (can use R,G,B format) +weka.gui.visualize.Plot2D.axisColour=black + +# Colour for the background of the 2D plot (can use R,G,B format) +weka.gui.visualize.Plot2D.backgroundColour=white + +# The JFrame (needs to implement the interface weka.gui.visualize.InstanceInfo) +# for displaying Instance information. +weka.gui.visualize.Plot2D.instanceInfoFrame=weka.gui.visualize.InstanceInfoFrame + +# Display the list of one dimensional attribute visualizations +weka.gui.visualize.VisualizePanel.displayAttributeBars=true + +# Colour for the background of the attribute bars in the +# AttributePanel (can use R,G,B format) +weka.gui.visualize.AttributePanel.barColour=white + +# If you regularly visualize certain datasets with the same structure +# you might want to define default x, y and colour dimensions (attributes) +# to visualize on. +# Just uncomment and set up the following +# weka.gui.visualize.VisualizePanel..XDimension= +# weka.gui.visualize.VisualizePanel..YDimension= +# weka.gui.visualize.VisualizePanel..ColourDimension= +# NOTE: spaces in relation names can be handled by using +# escape characters (java 1.2), eg. my\ first\ relation\ name + +# Defaults for threshold curve plots +weka.gui.visualize.ThresholdVisualizePanel.ThresholdCurve.XDimension=False\ Positive\ Rate +weka.gui.visualize.ThresholdVisualizePanel.ThresholdCurve.YDimension=True\ Positive\ Rate +weka.gui.visualize.ThresholdVisualizePanel.ThresholdCurve.ColourDimension=Threshold + +#Defaults for cost curve plots +weka.gui.visualize.VisualizePanel.CostCurve.XDimension=Probability\ Cost\ Function +weka.gui.visualize.VisualizePanel.CostCurve.YDimension=Normalized\ Expected\ Cost +weka.gui.visualize.VisualizePanel.CostCurve.ColourDimension=Threshold + +# Defaults for margin curve plots +weka.gui.visualize.VisualizePanel.MarginCurve.XDimension=Margin +weka.gui.visualize.VisualizePanel.MarginCurve.YDimension=Cumulative +weka.gui.visualize.VisualizePanel.MarginCurve.ColourDimension=Margin diff --git a/workflow/apps/java/clustering/bin/weka/gui/visualize/VisualizePanel$1.class b/workflow/apps/java/clustering/bin/weka/gui/visualize/VisualizePanel$1.class new file mode 100644 index 00000000..3a0dc8d1 Binary files /dev/null and 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a/workflow/apps/java/clustering/bin/weka/knowledgeflow/BaseExecutionEnvironment$1.class b/workflow/apps/java/clustering/bin/weka/knowledgeflow/BaseExecutionEnvironment$1.class new file mode 100644 index 00000000..45d53c12 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/knowledgeflow/BaseExecutionEnvironment$1.class differ diff --git a/workflow/apps/java/clustering/bin/weka/knowledgeflow/BaseExecutionEnvironment$2.class b/workflow/apps/java/clustering/bin/weka/knowledgeflow/BaseExecutionEnvironment$2.class new file mode 100644 index 00000000..c3ea89e4 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/knowledgeflow/BaseExecutionEnvironment$2.class differ diff --git a/workflow/apps/java/clustering/bin/weka/knowledgeflow/BaseExecutionEnvironment$3.class b/workflow/apps/java/clustering/bin/weka/knowledgeflow/BaseExecutionEnvironment$3.class new file mode 100644 index 00000000..ef134b14 Binary files /dev/null and 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a/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TextSaver$TextSaverDefaults.class b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TextSaver$TextSaverDefaults.class new file mode 100644 index 00000000..9d17955d Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TextSaver$TextSaverDefaults.class differ diff --git a/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TextSaver.class b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TextSaver.class new file mode 100644 index 00000000..b8c7aca1 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TextSaver.class differ diff --git a/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TextViewer$TextNotificationListener.class b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TextViewer$TextNotificationListener.class new file mode 100644 index 00000000..93b81b53 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TextViewer$TextNotificationListener.class differ diff --git a/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TextViewer.class b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TextViewer.class new file mode 100644 index 00000000..dff1c7a7 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TextViewer.class differ diff --git a/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TrainTestSplitMaker.class b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TrainTestSplitMaker.class new file mode 100644 index 00000000..84c74b64 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TrainTestSplitMaker.class differ diff --git a/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TrainingSetMaker.class b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TrainingSetMaker.class new file mode 100644 index 00000000..f4defcdb Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/TrainingSetMaker.class differ diff --git a/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/WekaAlgorithmWrapper.class b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/WekaAlgorithmWrapper.class new file mode 100644 index 00000000..d92753d1 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/WekaAlgorithmWrapper.class differ diff --git a/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/WriteDataToResult.class b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/WriteDataToResult.class new file mode 100644 index 00000000..55150938 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/WriteDataToResult.class differ diff --git a/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/WriteWekaLog.class b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/WriteWekaLog.class new file mode 100644 index 00000000..05610380 Binary files /dev/null and b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/WriteWekaLog.class differ diff --git a/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/steps.props b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/steps.props new file mode 100644 index 00000000..145d23ab --- /dev/null +++ b/workflow/apps/java/clustering/bin/weka/knowledgeflow/steps/steps.props @@ -0,0 +1,28 @@ +weka.knowledgeflow.steps.Step=weka.knowledgeflow.steps.Loader,weka.knowledgeflow.steps.Saver,\ +weka.knowledgeflow.steps.DataGenerator,weka.knowledgeflow.steps.Filter,\ +weka.knowledgeflow.steps.Classifier,weka.knowledgeflow.steps.Clusterer,\ +weka.knowledgeflow.steps.Associator,weka.knowledgeflow.steps.ASEvaluator,\ +weka.knowledgeflow.steps.ASSearchStrategy,\ +weka.knowledgeflow.steps.TrainingSetMaker,weka.knowledgeflow.steps.TestSetMaker,\ +weka.knowledgeflow.steps.TrainTestSplitMaker,weka.knowledgeflow.steps.ClassAssigner,\ +weka.knowledgeflow.steps.ClassValuePicker,weka.knowledgeflow.steps.ClassifierPerformanceEvaluator,\ +weka.knowledgeflow.steps.ClustererPerformanceEvaluator,\ +weka.knowledgeflow.steps.CrossValidationFoldMaker,weka.knowledgeflow.steps.Dummy,\ +weka.knowledgeflow.steps.PredictionAppender,weka.knowledgeflow.steps.TextSaver,\ +weka.knowledgeflow.steps.ImageSaver,\ +weka.knowledgeflow.steps.TextViewer,weka.knowledgeflow.steps.ImageViewer,\ +weka.knowledgeflow.steps.AttributeSummarizer,\ +weka.knowledgeflow.steps.IncrementalClassifierEvaluator,weka.knowledgeflow.steps.StripChart,\ +weka.knowledgeflow.steps.ModelPerformanceChart,weka.knowledgeflow.steps.DataVisualizer,\ +weka.knowledgeflow.steps.BoundaryPlotter,\ +weka.knowledgeflow.steps.ScatterPlotMatrix,weka.knowledgeflow.steps.GraphViewer,\ +weka.knowledgeflow.steps.CostBenefitAnalysis,weka.knowledgeflow.steps.SerializedModelSaver,\ +weka.knowledgeflow.steps.SetVariables,weka.knowledgeflow.steps.MakeResourceIntensive,\ +weka.knowledgeflow.steps.Block,weka.knowledgeflow.steps.AlterRelationName,\ +weka.knowledgeflow.steps.Sorter,weka.knowledgeflow.steps.SubstringReplacer,\ +weka.knowledgeflow.steps.SubstringLabeler,weka.knowledgeflow.steps.Appender,\ +weka.knowledgeflow.steps.FlowByExpression,weka.knowledgeflow.steps.InstanceStreamToBatchMaker,\ +weka.knowledgeflow.steps.Join,weka.knowledgeflow.steps.DataGrid,weka.knowledgeflow.steps.SendToPerspective,\ +weka.knowledgeflow.steps.WriteWekaLog,weka.knowledgeflow.steps.Job,weka.knowledgeflow.steps.StorePropertiesInEnvironment,\ +weka.knowledgeflow.steps.SetPropertiesFromEnvironment,weka.knowledgeflow.steps.WriteDataToResult,\ +weka.knowledgeflow.steps.GetDataFromResult,weka.knowledgeflow.steps.ExecuteProcess diff --git a/workflow/apps/java/clustering/build b/workflow/apps/java/clustering/build new file mode 100755 index 00000000..960e4708 --- /dev/null +++ b/workflow/apps/java/clustering/build @@ -0,0 +1,37 @@ +#!/usr/bin/env bash +# +# On rpm, you'll need: +# +# * java-devel +# * javapackages-tools +# * ecj +# + +dirs=(bin lib src) +name="weka-clustering.jar" +weka_version="3.8.6" +weka_version_hyphen="3-8-6" + +[[ -f $name ]] && mv "$name" "$name.bk" + +[[ -d src ]] || (echo "This script requires the input java files in src"; exit) + +rm -rf bin + +for d in "${dirs[@]}"; do + [[ -d $d ]] || mkdir "$d" +done + +# Download and extract weka.jar to the lib dir +wget -qO temp.zip "https://sourceforge.net/projects/weka/files/weka-${weka_version_hyphen%-*}/$weka_version/weka-$weka_version_hyphen.zip/download" && +unzip -o -j temp.zip weka-$weka_version_hyphen/weka.jar -d lib && +rm temp.zip + +# Build the classes from source java +ecj -17 -classpath lib/weka.jar -d bin src && + +# Add weka classes to the bin +unzip -o lib/weka.jar -d bin && + +# Create the jar file from the classes +jar cf "$name" -C bin . diff --git a/workflow/apps/java/clustering/lib/weka.jar b/workflow/apps/java/clustering/lib/weka.jar new file mode 100644 index 00000000..0bf8f244 Binary files /dev/null and b/workflow/apps/java/clustering/lib/weka.jar differ diff --git a/workflow/apps/java/clustering/src/ExecMain.java b/workflow/apps/java/clustering/src/ExecMain.java new file mode 100755 index 00000000..89da1a11 --- /dev/null +++ b/workflow/apps/java/clustering/src/ExecMain.java @@ -0,0 +1,102 @@ +/* + * This is the main class to execute the computation and get the GOID. + */ + +import java.io.File; +import java.io.FileOutputStream; +import java.io.OutputStreamWriter; +import java.util.Vector; +import weka.core.Instances; + +/** + * + * @author DTian + */ +public class ExecMain { + + public static void main(String[] args) { + +// SGD2AttrTable sgd = new SGD2AttrTable(); +// Get clusters + + try { + // Check the input arguments + checkParameters(args.length); + GetClusters myGetClusters = new GetClusters(); + + // To get the input file type + Instances oriData = myGetClusters.input(args[0]); + + // Get the output files name + String outputWholeCluster = args[0] + "-WholeTree.txt"; + String outputFinalTable = args[0] + "-finalTable.csv"; + String outputSummary = args[0] + "-summary.csv"; + boolean fromFunction = true?false:args[4].trim().compareToIgnoreCase("true") == 0; + + // Create the root cluster name + int round = 1; //for tree level + int position = 0; // for node position in same level + String rootName = (round-1)+"-"+position+"-"+0; + + // System.out.println("root cluster is:" + rootName); + myGetClusters.printRootName(outputWholeCluster,rootName); + + // Create a vector for fianl table + Vector vecFinalTable = new Vector(); + Vector vecSummary = new Vector(); + + //get the variable name + vecFinalTable.addElement(myGetClusters.printTableHead(oriData)); + + // Create the root node + TreeNode root = new TreeNode(rootName,0.0,oriData,null); + OutputStreamWriter xmlWriter = new OutputStreamWriter( + new FileOutputStream(new File("tree.xml"), true)); + xmlWriter.write(" \n \n \n \n"); + xmlWriter.write(" \n \n"); + xmlWriter.flush(); + + // Recursive clustering the data + myGetClusters.clustering( + root, + round, + ""+position, + vecFinalTable, + vecSummary, + outputWholeCluster, + xmlWriter, + args[1], + args[2], + args[3], + fromFunction + ); + + xmlWriter.write(" \n"); + xmlWriter.write("\n"); + xmlWriter.close(); + + // Output final result + myGetClusters.printVector(vecFinalTable,outputFinalTable); + myGetClusters.printVector(vecSummary,outputSummary); + } catch (Exception e) { + e.printStackTrace(); + System.exit(1); + } + } + + /** + * check the number of the arguments: + * java GetCluster arg1 arg2 ... + * + * @param length the length of the arguments + * in this program, length should be 1 + */ + private static void checkParameters(int length) { + if(length != 5) { + // there are 5 parameters, 1,file for clustering; 2, lookup table file; + // 3, backgroud file; 4, repeat counts(an integer) 5, GoIDfromFunction (boolean) + System.out.println("Usage: java ExecMain clusterFileName GoMatrixFilename backGroundFilename repeatTime true|false"); + System.exit(1); + } + } +} diff --git a/workflow/apps/java/clustering/src/GetClusters.java b/workflow/apps/java/clustering/src/GetClusters.java new file mode 100755 index 00000000..9d387bd9 --- /dev/null +++ b/workflow/apps/java/clustering/src/GetClusters.java @@ -0,0 +1,532 @@ + +/** + * This program will take an input file(either in arff format or csv format). + * outout 3 files: one is the tree structure. another is the final table with + * all information, the last one is the summary information + * + */ +import java.io.BufferedReader; +import java.io.File; +import java.io.FileNotFoundException; +import java.io.FileOutputStream; +import java.io.FileReader; +import java.io.IOException; +import java.io.OutputStreamWriter; +import java.util.Vector; + +import weka.clusterers.ClusterEvaluation; +import weka.clusterers.EM; +import weka.core.Instances; + +public class GetClusters { + + public GetClusters() { + } + + /** + * + * @param root the tree node we need to cluster + * @param generation the depth of the tree + * @param position the breadth of the tree + * @param vecFinalTable contain the final table + */ + public int clustering(TreeNode root, int generation, + String position, Vector vecFinalTable, + Vector vecSummary, String outputFilename, OutputStreamWriter xmlWriter, + String lookupFile, String backgroundFile, String count, boolean fromFunction) { + int result = 0; + try { + + FileOutputStream stream;// provides file access + OutputStreamWriter writer;// writes to the file + stream = new FileOutputStream(new File(outputFilename), true); + writer = new OutputStreamWriter(stream); + + // ***** 1 create a copy of original data ***** + Instances oriData = root.getData(); + Instances data = new Instances(oriData); + + // ***** 2 remove attribute: orf_name(string attribute) ***** +// data.deleteAttributeAt(0); + data.deleteStringAttributes(); + + // ***** 3 clustering ***** + EM clusterer = new EM(); // new instance of clusterer + clusterer.buildClusterer(data); // build the clusterer + + // evaluate cluster + ClusterEvaluation eval = new ClusterEvaluation(); + eval.setClusterer(clusterer); // the cluster to evaluate + eval.evaluateClusterer(data); // data to evaluate the clusterer on + + //get the rawGoID and zScore for the + //to be continued. AAA + String[] clusterNames = getClusterNames(oriData); + double[] goID = null; + if(fromFunction){ + goID = this.getGoID(clusterNames, lookupFile, backgroundFile,count); + }else{ + goID = this.getGoIDFromFunc(clusterNames, lookupFile, backgroundFile,count); + } + + double logLikelihood = eval.getLogLikelihood(); + writer.write("logLikelihood is: " + logLikelihood + "\n"); + writer.write("GoID is: " + goID[0] + "\n"); + writer.write("zScore is: " + goID[1] + "\n\n"); + writer.flush(); + + // ***** 4 get the sub clusters ***** + int numberOfSubCluster = eval.getNumClusters(); + if (numberOfSubCluster > 1) {// not an end node + + // create numberOfSubCluster instances array to store sub + // clusters + Instances[] subData = new Instances[numberOfSubCluster]; + TreeNode[] subNode = new TreeNode[numberOfSubCluster]; + for (int i = 0; i < numberOfSubCluster; i++) { + subData[i] = new Instances(oriData); + subData[i].delete();// keep only data head(attributes part) + } + // //System.out.println("\nlength is: " + data.numInstances()); + // //System.out.println("number of clusters: " + + // numberOfSubCluster); + + // //System.out.println(eval.clusterResultsToString()); + double[] dArray = eval.getClusterAssignments(); + for (int i = 0; i < dArray.length; i++) { + int clusterNumber = (int) dArray[i]; + // //System.out.println("\ngene " + i + " is in cluster: " + // + clusterNumber + ",\tlog likelihood is:" + // + eval.getLogLikelihood()); + // //System.out.println("***************"); + + // assign each gene to according cluster + for (int j = 0; j < subData.length; j++) { + if (j == clusterNumber) { + subData[j].add(oriData.instance(i)); + } + }// end of inner j loop + }// end of outter i loop + + + // ***** 5 recursive call ***** + String uniName = ""; +// for (int i = 0; i <= generation; i++) { +// uniName += "0"; +// } + uniName += generation + "-" + position; + generation++; + for (int i = 0; i < numberOfSubCluster; i++) { + String name = uniName + "-" + i; + //System.out.println("\n******************************"); + //System.out.println("cluster name: " + name); + writer.write("\n******************************\n"); + writer.write("cluster name: " + name + "\n"); + writer.flush(); + xmlWriter.write(" \n \n"); + xmlWriter.flush(); + + subNode[i] = new TreeNode(name, eval.getLogLikelihood(), + subData[i], root); + result += clustering(subNode[i], generation, + position + "." + i, vecFinalTable, vecSummary, outputFilename, + xmlWriter,lookupFile,backgroundFile,count,fromFunction); + xmlWriter.write(" \n"); + xmlWriter.flush(); + }// end of for loop + } else { //for leaf node + //System.out.println("leaf node"); + result = 1; + int temp = 1; + if (!vecSummary.isEmpty()) { + String strT = (vecSummary.lastElement().toString()).split(",")[1]; + temp = Integer.parseInt(strT.trim()) + 1; + } + writer.write("leaf node\n"); + writer.flush(); + + for (int i = 0; i < root.getData().numInstances(); i++) { + String strTemp = eval.getLogLikelihood() + "," + root.getData().instance(i) + "," + getAncestor(root, false) + "," + temp; + //System.out.println( strTemp); + writer.write(strTemp + "\n"); + writer.flush(); + xmlWriter.write("\n \n\n"); + xmlWriter.flush(); + vecFinalTable.addElement(strTemp); + } + + vecSummary.addElement(getAncestor(root, false).toString() + "," + temp + "," + root.getData().numInstances() + "," + logLikelihood); + //System.out.println("******************************\n"); + writer.write("******************************\n"); + writer.flush(); + generation--; + }//end of else + + + writer.close(); + stream.close(); + + } catch (Exception e) { + // TODO Auto-generated catch block + e.printStackTrace(); + } + return result; + }//end of method "clustering" + + /** + * output the root cluster name to file + * @param fileName output file name + * @param rootName thr root cluster name + */ + public void printRootName(String fileName, String rootName) { + try { + FileOutputStream stream;// provides file access + OutputStreamWriter writer;// writes to the file + stream = new FileOutputStream(new File(fileName), true); + writer = new OutputStreamWriter(stream); + writer.write("root cluster is:" + rootName + "\n"); + writer.flush(); + writer.close(); + stream.close(); + } catch (FileNotFoundException e) { + // TODO Auto-generated catch block + e.printStackTrace(); + } catch (IOException e) { + // TODO Auto-generated catch block + e.printStackTrace(); + } + } + + /** + * print out the instance part of the data into a CSV formated table. + * + * @param data: the printed data set + */ + public String printTableHead(Instances data) { + String strResult = "likelihood"; + for (int i = 0; i < data.numAttributes(); i++) { + String strTemp = ""; + String[] strArr = data.attribute(i).toString().split("\\ "); + for (int j = 1; j < strArr.length - 1; j++) { + strTemp += strArr[j]; + } + strResult += "," + strTemp; + } + + return strResult + ",cluster origin,cluster ID"; + }//end of method "printTalbe" + + /** + * print the vector + * @param vec + */ + public void printVector(Vector vec, String outputFilename) { + //System.out.println("\n***************************"); + //System.out.println("*** final result ***"); + //System.out.println("***************************"); + + try { + FileOutputStream stream;// provides file access + OutputStreamWriter writer;// writes to the file + stream = new FileOutputStream(new File(outputFilename), false); + writer = new OutputStreamWriter(stream); + + for (int i = 0; i < vec.size(); i++) { + //System.out.println(vec.elementAt(i)); + writer.write(vec.elementAt(i).toString() + "\n"); + } + + writer.close(); + stream.close(); + } catch (FileNotFoundException e) { + // TODO Auto-generated catch block + e.printStackTrace(); + } catch (IOException e) { + // TODO Auto-generated catch block + e.printStackTrace(); + } + + //System.out.println("\n***************************"); + //System.out.println("*** end of final result ***"); + //System.out.println("***************************"); + } + + /** + * + * @param endNode an leaf node + * @return a string contains all the ancestor's name of the node + */ + public String getAncestor(TreeNode endNode, boolean fromLeafNode) { + String strResult = endNode.getStrName(); + TreeNode tempNode = endNode; + while (tempNode.getParent() != null) { + tempNode = tempNode.getParent(); + strResult += "; " + tempNode.getStrName(); + } + if (fromLeafNode) { + return strResult; + } else { + String newResult = ""; + String[] history = strResult.split("\\;"); + for (int i = history.length; i > 0; i--) { + newResult += history[i - 1] + "; "; + } + return newResult; + } + } + + /** + * check the number of the arguments: + * java GetCluster arg1 arg2 ... + * + * @param length the length of the arguments + * in this program, length should be 1 + */ + public void checkParameters(int length) { + if (length != 1) { + System.out.println("Usage: java GetCluster inputFileName"); + System.exit(1); + } + } + + /** + * + * @param inputFileName the name of the input file name + * @return an Instances of Weka Instances + */ + public Instances input(String inputFileName) { + String[] inputName = inputFileName.split("\\."); + Instances oriData = null; + try { + if (inputName[inputName.length - 1].compareToIgnoreCase("csv") == 0) { +// read from csv file + readCSV(inputFileName); + FileReader f = new FileReader(inputFileName + ".arff"); + BufferedReader b = new BufferedReader(f); + oriData = new Instances(b); + } else if (inputName[inputName.length - 1].compareToIgnoreCase("arff") == 0) { + // read from arff data + FileReader f = new FileReader(inputFileName); + BufferedReader b = new BufferedReader(f); + oriData = new Instances(b); + } else { + System.out.println("only .arff or .csv format allowed!"); + System.exit(1); + } + } catch (FileNotFoundException e) { + // TODO Auto-generated catch block + e.printStackTrace(); + } catch (IOException e) { + // TODO Auto-generated catch block + e.printStackTrace(); + } + return oriData; + } + + /** + * read a csv file and convert to a arff file + * @param inputName the name of the csv file + */ + public void readCSV(String inputName) { + + try { + FileReader fr = new FileReader(inputName); + BufferedReader br = new BufferedReader(fr); + FileOutputStream stream;// provides file access + OutputStreamWriter writer;// writes to the file + stream = new FileOutputStream(new File(inputName + ".arff"), false); + writer = new OutputStreamWriter(stream); + + String strLine = br.readLine(); + String[] varNameArray = strLine.split("\\,"); + + writer.write("@RELATION dataset" + "\n\n"); + for (int i = 0; i < varNameArray.length; i++) { + if (i < 2) { + writer.write("@ATTRIBUTE" + " " + "\"" + varNameArray[i] + "\"" + " " + "string" + "\n"); + } else { + writer.write("@ATTRIBUTE" + " " + "\"" + varNameArray[i] + "\"" + " " + "numeric" + "\n"); + } + } + writer.write("\n@DATA\n"); + while ((strLine = br.readLine()) != null) { + writer.write(strLine + "\n"); + } + + writer.close(); + stream.close(); + fr.close(); + br.close(); + + } catch (FileNotFoundException e) { + // TODO Auto-generated catch block + e.printStackTrace(); + } catch (IOException e) { + // TODO Auto-generated catch block + e.printStackTrace(); + } + + } + + /** + * + * @param data + * @return an array contains the first element + * of each instance of input data + */ + private String[] getClusterNames(Instances data) { + String[] result = new String[data.numInstances()]; + for (int i = 0; i < result.length; i++) { + String[] strArray = data.instance(i).toString().split("\\,"); + result[i] = strArray[0]; + } + return result; + } + + private double[] getGoID(String[] clusterNames, String lookupFile, String backgroundFile, String count) { + //******************************** + // part 2, calculate RawGoID + //******************************** + double[] result = new double[2]; + + //initialize local variables: + RawGoID myRawGoID = new RawGoID(clusterNames, lookupFile, backgroundFile); + double clusterGoid = myRawGoID.getRawGoID(); + double randomAve = 0.0; + double randomStd = 0.0; + double zScore = 0.0; + + // System.out.println("real cluster raw GOid =" + clusterGoid); + + // get 'repeat time' random rawGoIDs + double[] randomGoid = new double[Integer.parseInt(count)]; + for (int i = 0; i < Integer.parseInt(count); i++) { + randomGoid[i] = myRawGoID.getRandomRawGoID(); +// System.out.println("now is in loop :" + (i + 1)); +// System.out.println("randomGOid = " + randomGoid[i]); + } + + //calculate + randomAve = Stats.getMean(randomGoid); + randomStd = Stats.getStdDev(randomGoid); + zScore = Stats.getZscore(randomAve, randomStd, clusterGoid); + result[0] = clusterGoid; + result[1] = zScore; + return result; + + } + + private double[] getGoIDFromFunc(String[] clusterNames, String lookupFile, String backgroundFile, String count) { + //******************************** + // part 2, calculate RawGoID + //******************************** + double[] result = new double[2]; + + //initialize local variables: + RawGoID myRawGoID = new RawGoID(clusterNames, lookupFile, backgroundFile); + double clusterGoid = myRawGoID.getRawGoID(); + double randomAve = 0.0; + double randomStd = 0.0; + double zScore = 0.0; + + // System.out.println("real cluster raw GOid =" + clusterGoid); + + // get 'repeat time' random rawGoIDs + double[] randomGoid = new double[Integer.parseInt(count)]; + for (int i = 0; i < Integer.parseInt(count); i++) { + randomGoid[i] = myRawGoID.getRandomRawGoID(); +// System.out.println("now is in loop :" + (i + 1)); +// System.out.println("randomGOid = " + randomGoid[i]); + } + + //calculate + randomAve = Stats.getMeanFromFunc(myRawGoID.getOriClusterSize()); + randomStd = Stats.getStdDevFromFunc(myRawGoID.getOriClusterSize()); + zScore = Stats.getZscore(randomAve, randomStd, clusterGoid); + result[0] = clusterGoid; + result[1] = zScore; + return result; + + } +}//end of class + + + +final class TreeNode { + + private String strName; + private double dLikelihood; + private Instances data; + private TreeNode parent; +// TreeNode child; + + /** + * @param strName name of node + * @param likelihood likelihood of the data + * @param data data set + * @param parent point to its parent node + * @param child point to its child node + */ + public TreeNode(String strName, double likelihood, Instances data, TreeNode parent) { + this.strName = strName; + dLikelihood = likelihood; + this.data = data; + this.parent = parent; + } + + /** + * @return the data + */ + public Instances getData() { + return data; + } + + /** + * @param data the data to set + */ + public void setData(Instances data) { + this.data = data; + } + + /** + * @return the dLikelihood + */ + public double getDLikelihood() { + return dLikelihood; + } + + /** + * @param likelihood the dLikelihood to set + */ + public void setDLikelihood(double likelihood) { + dLikelihood = likelihood; + } + + /** + * @return the parent + */ + public TreeNode getParent() { + return parent; + } + + /** + * @param parent the parent to set + */ + public void setParent(TreeNode parent) { + this.parent = parent; + } + + /** + * @return the strName + */ + public String getStrName() { + return strName; + } + + /** + * @param strName the strName to set + */ + public void setStrName(String strName) { + this.strName = strName; + } +} diff --git a/workflow/apps/java/clustering/src/Information.java b/workflow/apps/java/clustering/src/Information.java new file mode 100755 index 00000000..8fdeb7ff --- /dev/null +++ b/workflow/apps/java/clustering/src/Information.java @@ -0,0 +1,165 @@ +/* + * To change this template, choose Tools | Templates + * and open the template in the editor. + */ + +import java.io.BufferedWriter; +import java.io.FileWriter; +import java.util.HashMap; +import java.util.Iterator; + +/** + * + * @author DTian + */ +public class Information { + + /** + * + * @param key the key of the dictionary + * @return the entropy + */ + public static double entropy(String [] data ) { + double entropy = 0; + + // Frequency table + HashMap freqDict = new HashMap(); + int one = 1; + + for(int i=0; i probDict1 = new HashMap(); + HashMap probDict2 = new HashMap(); + Iterator it = freqDict1.keySet().iterator(); + while (it.hasNext()) { + Object newkey = it.next(); + double value = 0; + value = Double.parseDouble((String) freqDict1.get(newkey)) / data1.length; + probDict1.put(newkey, value + ""); + } + + it = freqDict2.keySet().iterator(); + while (it.hasNext()) { + Object newkey = it.next(); + double value = 0; + value = Double.parseDouble((String) freqDict2.get(newkey)) / data2.length; + probDict2.put(newkey, value + ""); + } + + // Calculate the relative entropy + it = probDict1.keySet().iterator(); + while (it.hasNext()) { + Object newkey = it.next(); + Object value1 = probDict1.get(newkey); + //Object value2 = probDict2.get(newkey); + double dValue1 = Double.parseDouble(probDict1.get(newkey).toString()); + double dValue2 = Double.parseDouble(probDict2.get(newkey).toString()); + if ( value1.toString().trim().compareToIgnoreCase("1.0") == 0) { + result = result + dValue1 * (Math.log(dValue1/dValue2) / Math.log(2)); + } else if (value1.toString().trim().compareToIgnoreCase("0") == 0){ + result = result + (1-dValue1) * (Math.log((1-dValue1)/(1-dValue2)) / Math.log(2)); + } else { + result = result + dValue1 * (Math.log(dValue1/dValue2) / Math.log(2)); + result = result + (1-dValue1) * (Math.log((1-dValue1)/(1-dValue2)) / Math.log(2)); + } + // toFile(result+"", "probDict1.txt"); + // toFile(result, "resultsOfresult.txt");//check point by Jingyu + } + //toFile(probDict1.size()+ "*******************", "probDict1.txt"); + //System.out.println("relative entropy = " + result); + return result; + } + + private static void toFile(String data, String filename) { + + // Output to file + try { + BufferedWriter writer = new BufferedWriter(new FileWriter(filename,true)); + writer.write(data + "\n"); + writer.close(); + } catch (Exception e) { + System.err.println(e.getStackTrace()); + } + } + + private static void toFileHM(HashMap data, String filename) { + + // Output to file + try { + BufferedWriter writer = new BufferedWriter(new FileWriter(filename, true)); + for (Object key : data.keySet()) { + writer.write(key.toString() +":"+ data.get(key)+"\n"); + } + writer.close(); + } catch (Exception e) { + System.err.println(e.getStackTrace()); + } + } +} diff --git a/workflow/apps/java/clustering/src/Matrix.java b/workflow/apps/java/clustering/src/Matrix.java new file mode 100755 index 00000000..b1f30ab9 --- /dev/null +++ b/workflow/apps/java/clustering/src/Matrix.java @@ -0,0 +1,130 @@ +/* + * To change this template, choose Tools | Templates + * and open the template in the editor. + */ + +import java.io.BufferedReader; +import java.io.FileReader; +import java.io.IOException; +import java.util.ArrayList; +import java.util.Arrays; +import java.util.HashMap; +import java.util.Iterator; + +/** + * + * @author DTian + */ +public class Matrix { + + private HashMap matrix; // store data + private int rowSize; // row size of matrix + private int colSize; // column size of value array + private final int lookupTableSize = 9000; //size of look up table + + public int getColSize() { + return colSize; + } + + public void setColSize(int colSize) { + this.colSize = colSize; + } + + public HashMap getMatrix() { + return matrix; + } + + public void setMatrix(HashMap matrix) { + this.matrix = matrix; + } + + public int getRowSize() { + return rowSize; + } + + public void setRowSize(int rowSize) { + this.rowSize = rowSize; + } + + public Matrix() { + rowSize = 0; + colSize = 0; + matrix = new HashMap(); + } + + /** + * constructor with 1 String parameter + * + * @param filename : the name of the input file + * + * @result: create a matrix from a input file + * + */ + public Matrix(String filename) { + + // Initialize variables + this.setRowSize(0); + this.setColSize(0); + matrix = new HashMap(lookupTableSize); + + try { + + FileReader fr = new FileReader(filename); + BufferedReader br = new BufferedReader(fr); + + // strRow is used to read line from file(skip first row) + String strRow = br.readLine(); + + // The while loop read the data from data file to vvf + while ((strRow = br.readLine()) != null) { + + // strArray was used to store the float value from data file in + // string format + String delimiter = ""; + if (strRow.indexOf(",") >= 0) { //for CSV file + delimiter = "\\,"; + } else { // for whitespace delimited file + delimiter = "\\s"; + } + + String[] strArray = strRow.trim().split(delimiter); + String[] strArrValue = Arrays.copyOfRange(strArray, 1, strArray.length); + // strArray[0] is the orf name, others are value + matrix.put(strArray[0].trim().toLowerCase(), strArrValue); + rowSize++; + colSize = strArrValue.length; + } + + br.close(); + fr.close(); + } catch (IOException e) { + // catch possible io errors from readLine() + System.out.println("IOException error in 'class Matrix, constructor'"); + } + } + + /** + * + * @param index, the specifed key + * @return: the string array of the value + */ + public String[] getSpecifiedValue(Object key) { + return (String[]) matrix.get(key); + } + + /** + * @return the list of orf names + */ + public ArrayList getOrfNames() { + ArrayList result = new ArrayList(this.getRowSize()); + Iterator it = matrix.keySet().iterator(); + while (it.hasNext()) { + result.add(it.next()); + } + return result; + } + + public void addValue(Object key, Object value) { + matrix.put(key, value); + } +} diff --git a/workflow/apps/java/clustering/src/RawGoID.java b/workflow/apps/java/clustering/src/RawGoID.java new file mode 100755 index 00000000..648c541f --- /dev/null +++ b/workflow/apps/java/clustering/src/RawGoID.java @@ -0,0 +1,375 @@ +/* + * the input: 3 files, 1 is cluster file, 2 is Go matrix file (lookup table) + * 3 is back ground file(pool) + * + * + */ + +import java.io.BufferedReader; +import java.io.BufferedWriter; +import java.io.FileReader; +import java.io.FileWriter; +import java.io.IOException; +import java.util.ArrayList; +import java.util.HashMap; +import java.util.Iterator; +import java.util.Random; + +/** + * + * @author DTian + */ +public class RawGoID { + + private ArrayList clusterGeneList; // for the input cluster file + private Matrix poolTable; //for the filtered gene pool list + private Matrix lookupTable; // for the lookup attribute table + private int oriClusterSize; //for the original cluster size + private ArrayList oriPoolOrfsName;//for the complete list of pool table + // private String randomFilename; + + public Matrix getLookupTable() { + return lookupTable; + } + + public void setLookupTable(Matrix lookupTable) { + this.lookupTable = lookupTable; + } + + public Matrix getPoolTable() { + return poolTable; + } + + public void setPoolTable(Matrix poolTable) { + this.poolTable = poolTable; + } + + public ArrayList getClusterGeneList() { + return clusterGeneList; + } + + public void setClusterGeneList(ArrayList clusterGeneList) { + this.clusterGeneList = clusterGeneList; + } + + public RawGoID() { + clusterGeneList = new ArrayList(); + poolTable = new Matrix(); + lookupTable = new Matrix(); + // randomFilename =""; + } + + public void setOriClusterSize(int oriClusterSize) { + this.oriClusterSize = oriClusterSize; + } + + public int getOriClusterSize () { + return oriClusterSize; + } + + public void setOriPoolOrfsName(ArrayList oriPoolOrfsName) { + this.oriPoolOrfsName = oriPoolOrfsName; + } + + public ArrayList getOriPoolOrfsName() { + return oriPoolOrfsName; + } + + /** + * + * @param clusterFilename : cluster Filename + * @param GoMatrixFilename : GoMatrix Filename + * @param backGroundFilename : backGround Filename + */ + public RawGoID(String clusterFilename, String GoMatrixFilename, String backGroundFilename) { + try { + clusterGeneList = new ArrayList(200); + ArrayList refClusterGeneList = new ArrayList (200); + + // Get the smallGeneList (a cluster ) + BufferedReader br = new BufferedReader(new FileReader(clusterFilename)); + + // strRow is used to read line from file + String strRow = ""; + while ((strRow = br.readLine()) != null) { + clusterGeneList.add(strRow.trim().toLowerCase()); + } + // System.out.println(clusterGeneList.size()); + setOriClusterSize(clusterGeneList.size()); + // System.out.println("original cluster size =" + clusterGeneList.size()); + + // Get the mtrix (lookup table) + lookupTable = new Matrix(GoMatrixFilename); + + // Get the bigGeneList (pool or back ground file) + br = new BufferedReader(new FileReader(backGroundFilename)); + + ArrayList poolOrfsName = new ArrayList(5000); + while ((strRow = br.readLine()) != null) { + poolOrfsName.add(strRow.trim().toLowerCase()); + } + this.setOriPoolOrfsName(poolOrfsName); + poolTable = new Matrix(); + for (int i = 0; i < poolOrfsName.size(); i++) { + Object tempKey = poolOrfsName.get(i); + if (lookupTable.getMatrix().containsKey(tempKey)) { + poolTable.addValue(tempKey, lookupTable.getMatrix().get(tempKey)); + } + } + poolTable.setRowSize(poolTable.getMatrix().size()); + poolTable.setColSize(lookupTable.getColSize()); + br.close(); + + // This loop is to take out any ORF from the cluster gene list if not exist in pool table + // not necessary if all cluster ORFs are from pool table + for (int i=0;i result = new ArrayList(clusterSize); + + // Jingyu: The following segment of code, which is deactivated, is designed to get the random cluster list from a lookuptable-filtered pooltable + // Jingyu: To do so may cause a bias in average of random raw GOid score by using a smaller pool list + // get a random cluster with same size of the cluster file and then calculate the Goid + // 1, get the random orf names to a ArrayList + + // HashMap hm = new HashMap(this.getClusterGeneList().size()); + // while (hm.keySet().size() < clusterSize) { + // hm.put(this.getPoolTable().getOrfNames().get(randInt(this.getPoolTable().getOrfNames().size())), "0"); + // } + // result.addAll(hm.keySet()); + + // Get a random cluster with same size of the cluster file from the original ORF pool + // Extra step added by Jingyu to remove the ORFs not existing in pooltable; + ArrayList localOriPoolTable = new ArrayList(); + localOriPoolTable = this.getOriPoolOrfsName(); + + // Checkpoint + // System.out.println(localOriPoolTable.size()); + for (int i=0;i1) { + return Math.sqrt(result/(data.length-1)); + } else { + return Math.sqrt(result/1); + } + } + + /** + * + * @param data the double array + * @return the mean of the double array. + */ + public static double getMean(double[] data) { + double result = 0.0; + for (double d : data) { + result += d; + } + return (result/data.length); + } + + /** + * + * @param size the size of ori cluster File + * @return the mean of the double array. + */ + public static double getMeanFromFunc(int size) { + return ( -4.8616 + 71.1806/Math.pow(size, 0.33511)); + } + + /** + * + * @param size the size of ori cluster File + * @return the mean of the double array. + */ + public static double getStdDevFromFunc(int size) { + return ( -0.04943 + 56.634/Math.pow(size, 0.89384)); + } + + public static double getZscore(double popMean, double popStd, double rawGoid) { + return (rawGoid - popMean)/popStd; + } +} diff --git a/workflow/apps/java/clustering/weka-clustering.jar b/workflow/apps/java/clustering/weka-clustering.jar new file mode 100644 index 00000000..bd7bd245 Binary files /dev/null and b/workflow/apps/java/clustering/weka-clustering.jar differ diff --git a/workflow/apps/matlab/easy/DgenResults.m b/workflow/apps/matlab/easy/DgenResults.m index 99096a82..310a9b87 100755 --- a/workflow/apps/matlab/easy/DgenResults.m +++ b/workflow/apps/matlab/easy/DgenResults.m @@ -50,9 +50,6 @@ end % localprojectScansDir=projectScansDir; % end -% TODO this seems weird -drivePos=min(strfind(projectScansDir,'/')); -drive=projectScansDir(1:(drivePos-1)); % DBupload=fullfile(drive,'EZdbFiles','DBupLOADfiles'); resultsFilename=fullfile(printResultsDir, 'results_elr.txt'); @@ -106,7 +103,7 @@ for s=1:size(scan,2) clear outCmat outCmat=scan(s).plate(p).CFout; - %Print Time Point HEADER for each plate for newly added intensity data + % Print Time Point HEADER for each plate for newly added intensity data if isequal(opt,'Res')||isequal(opt,'Both') fprintf(fid, '\n'); ln=ln+1; @@ -125,7 +122,7 @@ for s=1:size(scan,2) fprintf(fid, '\triseTm\tK\tr\tl\tR-squared\tK-lower\tK-upper\tr-lower\tr-upper\tl-lower\tl-upper\tArea\tLastInten\tSplineMaxRateTm\tLastFitTm\t1stFitTm\tMedianBase\tFitBase\tMinTm\tThreshTm'); if size(outCmat,2)==27 - fprintf(fid, '\ttc11Cut\ttc12Cut\ttc21Cut\ttc22Cut'); %'\tEarly1\tEarly2\tLate1\tLate2'); 17_0629 MinBaseIntens update for MedianBase label + fprintf(fid, '\ttc11Cut\ttc12Cut\ttc21Cut\ttc22Cut'); % '\tEarly1\tEarly2\tLate1\tLate2'); 17_0629 MinBaseIntens update for MedianBase label end fprintf(fid, '\tTotFitPts\tPostThreshFitPts\t1stBackgrd\tLstBackgrd\t1stMeanTotBackgrd\tLstMeanTotBackgrd'); end @@ -152,9 +149,9 @@ for s=1:size(scan,2) end end - numBlkCol=(maxNumIntens - dataLength); %size(outTseries,1)); + numBlkCol=(maxNumIntens - dataLength); % size(outTseries,1)); if isequal(opt,'Res')||isequal(opt,'Both') - for nn=1:numBlkCol %extend to col beyond longest rawDataSet + for nn=1:numBlkCol % extend to col beyond longest rawDataSet fprintf(fid, '\t'); end fprintf(fid,'\tOrfRep'); @@ -179,8 +176,8 @@ for s=1:size(scan,2) if rSq<.97 && rSq>0, selcode=strcat(selcode,' rSqLo');end if lval>(0.85*(max(outTseries))), selcode=strcat(selcode,' late');end if isnan(outCmat(n,7))||isnan(outCmat(n,8))||isnan(outCmat(n,9))... - ||isnan(outCmat(n,10))||isnan(outCmat(n,11))... - ||isnan(outCmat(n,12)), selcode=strcat(selcode,' NaN'); + || isnan(outCmat(n,10))||isnan(outCmat(n,11))... + || isnan(outCmat(n,12)), selcode=strcat(selcode,' NaN'); end % RiseTime Calculation @@ -318,7 +315,7 @@ for s=1:size(scan,2) fprintf(fid,'%d\t',ln); end - %DB Raw Intensities and Timepoints + % DB Raw Intensities and Timepoints if isequal(opt,'DB')||isequal(opt,'Both') fprintf(fid2, '\t%s\t%s',intensBlob,tmBlob ); % Masterplate sheet @@ -339,11 +336,11 @@ for s=1:size(scan,2) end fprintf(fid2, '\n'); end - end %if ~isempty(outCmat) - end %c - end %r - end %p -end %s + end + end + end + end +end if isequal(opt,'Res')||isequal(opt,'Both') fclose(fid); @@ -604,7 +601,6 @@ try fprintf(fid,'%d\t',ln); end - % Raw Intensities and Timepoints if isequal(opt,'DB')||isequal(opt,'Both') fprintf(fid2, '\t%s\t%s',intensBlob,tmBlob ); diff --git a/workflow/apps/r/PairwiseLK.R b/workflow/apps/r/PairwiseLK.R index 93ecf5ef..3026a3c3 100644 --- a/workflow/apps/r/PairwiseLK.R +++ b/workflow/apps/r/PairwiseLK.R @@ -39,8 +39,8 @@ Name2 <- Labels[expNumber2, 2] go_terms_file <- "Average_GOTerms_All.csv" input_file1 <- file.path(output_dir, exp_name, go_terms_file) input_file2 <- file.path(output_dir, exp_name2, go_terms_file) -pairDirL <- file.path(output_dir, paste("PairwiseCompareL_", exp_name, "-", exp_name2, sep = "")) -pairDirK <- file.path(output_dir, paste("PairwiseCompareK_", exp_name, "-", exp_name2, sep = "")) +pairDirL <- file.path(output_dir, paste0("PairwiseCompareL_", exp_name, "-", exp_name2)) +pairDirK <- file.path(output_dir, paste0("PairwiseCompareK_", exp_name, "-", exp_name2)) # Pairwise L # outputPlotly <- "../GTAresults/PairwiseCompareL/" #"/GTAresults/PairwiseCompareL/" @@ -146,7 +146,7 @@ gg <- ggplot(data = X, aes( SD_1 = Z_lm_L_SD_X1, SD_2 = Z_lm_L_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_rect( aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", @@ -156,12 +156,12 @@ gg <- ggplot(data = X, aes( fill = NA ) + geom_point(shape = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, " vs. ", Name2) + theme_Publication_legend_right() pdf( - file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOntology.pdf", sep = "")), + file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOntology.pdf")), width = 12, height = 8 ) @@ -169,7 +169,7 @@ pdf( gg dev.off() pgg <- ggplotly(gg) -fname <- file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_byOntology.html", sep = "")) +fname <- file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_byOntology.html")) htmlwidgets::saveWidget(pgg, fname) # ID aggravators and alleviators, regardless of whether they meet 2SD threshold @@ -209,7 +209,7 @@ gg <- ggplot(data = X, aes( SD_1 = Z_lm_L_SD_X1, SD_2 = Z_lm_L_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_rect( aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", @@ -219,12 +219,12 @@ gg <- ggplot(data = X, aes( fill = NA ) + geom_point(shape = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, " vs. ", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap.pdf", sep = "")), + file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap.pdf")), width = 12, height = 8 ) @@ -232,7 +232,7 @@ pdf( gg dev.off() pgg <- ggplotly(gg) -fname <- file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_byOverlap.html", sep = "")) +fname <- file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_byOverlap.html")) htmlwidgets::saveWidget(pgg, fname) x_rem2_gene <- X[X$NumGenes_Avg_X1 >= 2 & X$NumGenes_Avg_X2 >= 2, ] @@ -249,15 +249,15 @@ gg <- ggplot(data = x_rem2_gene, aes( SD_1 = Z_lm_L_SD_X1, SD_2 = Z_lm_L_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, "vs.", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_above2genes.pdf", sep = "")), + file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_above2genes.pdf")), width = 12, height = 8 ) @@ -266,7 +266,7 @@ gg dev.off() pgg <- ggplotly(gg) #pgg -fname <- file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_byOverlap_above2genes.html", sep = "")) +fname <- file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_byOverlap_above2genes.html")) htmlwidgets::saveWidget(pgg, fname) #4 @@ -282,15 +282,15 @@ gg <- ggplot(data = X_overlap_nothresold, aes( SD_1 = Z_lm_L_SD_X1, SD_2 = Z_lm_L_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, "vs.", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_Above2SD_ByOverlap.pdf", sep = "")), + file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_Above2SD_ByOverlap.pdf")), width = 12, height = 8 ) @@ -299,7 +299,7 @@ gg dev.off() pgg <- ggplotly(gg) #pgg -fname <- file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_Above2SD_ByOverlap.html", sep = "")) +fname <- file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_Above2SD_ByOverlap.html")) htmlwidgets::saveWidget(pgg, fname) # Only output GTA terms where average score is still above 2 after subtracting the SD @@ -345,15 +345,15 @@ gg <- ggplot(data = X_abovethreshold, aes( SD_1 = Z_lm_L_SD_X1, SD_2 = Z_lm_L_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, " vs. ", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold.pdf", sep = "")), + file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold.pdf")), width = 12, height = 8 ) @@ -362,7 +362,7 @@ gg dev.off() pgg <- ggplotly(gg) #pgg -fname <- file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold.html", sep = "")) +fname <- file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold.html")) htmlwidgets::saveWidget(pgg, fname) #6 @@ -377,16 +377,16 @@ gg <- ggplot(data = X_abovethreshold, aes( SD_1 = Z_lm_L_SD_X1, SD_2 = Z_lm_L_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_text(aes(label = Term_Avg), nudge_y = 0.25, size = 2) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3, size = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, "vs.", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_names.pdf", sep = "")), + file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_names.pdf")), width = 20, height = 20 ) @@ -395,7 +395,7 @@ gg dev.off() pgg <- ggplotly(gg) #pgg -fname <- file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_names.html", sep = "")) +fname <- file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_names.html")) htmlwidgets::saveWidget(pgg, fname) X_abovethreshold$X1_Rank <- NA @@ -415,16 +415,16 @@ gg <- ggplot(data = X_abovethreshold, aes( SD_1 = Z_lm_L_SD_X1, SD_2 = Z_lm_L_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_text(aes(label = X1_Rank), nudge_y = 0.25, size = 4) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3, size = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, "vs.", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX1.pdf", sep = "")), + file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX1.pdf")), width = 15, height = 15 ) @@ -435,7 +435,7 @@ pgg <- ggplotly(gg) #pgg fname <- - file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX1.html", sep = "")) + file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX1.html")) htmlwidgets::saveWidget(pgg, fname) #8 @@ -450,16 +450,16 @@ gg <- ggplot(data = X_abovethreshold, aes( SD_1 = Z_lm_L_SD_X1, SD_2 = Z_lm_L_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_text(aes(label = X2_Rank), nudge_y = 0.25, size = 4) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3, size = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, "vs.", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX2.pdf", sep = "")), + file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX2.pdf")), width = 15, height = 15 ) @@ -469,18 +469,18 @@ dev.off() pgg <- ggplotly(gg) #pgg fname <- - file.path(pairDirL, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX2.html", sep = "")) + file.path(pairDirL, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX2.html")) htmlwidgets::saveWidget(pgg, fname) write.csv( x = X, - file.path(pairDirL, paste("All_GTA_Avg_Scores_", Name1, "_vs_", Name2, ".csv", sep = "")), + file.path(pairDirL, paste0("All_GTA_Avg_Scores_", Name1, "_vs_", Name2, ".csv")), row.names = FALSE ) write.csv( x = X_abovethreshold, - file = file.path(pairDirL, paste("AboveThreshold_GTA_Avg_Scores_", Name1, "_vs_", Name2, ".csv", sep = "")), + file = file.path(pairDirL, paste0("AboveThreshold_GTA_Avg_Scores_", Name1, "_vs_", Name2, ".csv")), row.names = FALSE ) @@ -599,15 +599,15 @@ gg <- ggplot(data = X, aes( SD_1 = Z_lm_K_SD_X1, SD_2 = Z_lm_K_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, "vs.", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirK, paste("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOntology.pdf", sep = "")), + file.path(pairDirK, paste0("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOntology.pdf")), width = 12, height = 8 ) @@ -616,7 +616,7 @@ gg dev.off() pgg <- ggplotly(gg) #pgg -fname <- file.path(pairDirK, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_byOntology.html", sep = "")) +fname <- file.path(pairDirK, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_byOntology.html")) htmlwidgets::saveWidget(pgg, fname) #2 @@ -648,7 +648,7 @@ try(X[X$Term_Avg %in% X2_Specific_Aggravators_X1_Alleviatiors$Term_Avg, ]$Overla try(X[X$Term_Avg %in% X2_Specific_Alleviators_X1_Aggravators$Term_Avg, ]$Overlap_Avg <- paste(Name2, "Deletion_Enhancers", Name1, "Deletion_Suppressors", sep = "_")) -plotly_path <- file.path(pairDirK, paste("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_byOverlap.html", sep = "")) +plotly_path <- file.path(pairDirK, paste0("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_byOverlap.html")) gg <- ggplot(data = X, aes( x = Z_lm_K_Avg_X1, y = Z_lm_K_Avg_X2, @@ -660,15 +660,15 @@ gg <- ggplot(data = X, aes( SD_1 = Z_lm_K_SD_X1, SD_2 = Z_lm_K_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, "vs.", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirK, paste("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap.pdf", sep = "")), + file.path(pairDirK, paste0("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap.pdf")), width = 12, height = 8 ) @@ -678,12 +678,12 @@ dev.off() pgg <- ggplotly(gg) #2 -fname <- file.path(pairDirK, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_byOverlap.html", sep = "")) +fname <- file.path(pairDirK, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_byOverlap.html")) htmlwidgets::saveWidget(pgg, fname) #3 x_rem2_gene <- X[X$NumGenes_Avg_X1 >= 2 & X$NumGenes_Avg_X2 >= 2, ] -plotly_path <- file.path(pairDirK, paste("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_byOverlap_above2genes.html", sep = "")) +plotly_path <- file.path(pairDirK, paste0("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_byOverlap_above2genes.html")) gg <- ggplot(data = x_rem2_gene, aes( x = Z_lm_K_Avg_X1, y = Z_lm_K_Avg_X2, @@ -695,15 +695,15 @@ gg <- ggplot(data = x_rem2_gene, aes( SD_1 = Z_lm_K_SD_X1, SD_2 = Z_lm_K_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, "vs.", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirK, paste("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_above2genes.pdf", sep = "")), + file.path(pairDirK, paste0("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_above2genes.pdf")), width = 12, height = 8 ) @@ -712,7 +712,7 @@ gg dev.off() pgg <- ggplotly(gg) #pgg -fname <- file.path(pairDirK, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_byOverlap_above2genes.html", sep = "")) +fname <- file.path(pairDirK, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_byOverlap_above2genes.html")) htmlwidgets::saveWidget(pgg, fname) #4 @@ -728,15 +728,15 @@ gg <- ggplot(data = X_overlap_nothresold, aes( SD_1 = Z_lm_K_SD_X1, SD_2 = Z_lm_K_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, "vs.", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirK, paste("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_Above2SD_ByOverlap.pdf", sep = "")), + file.path(pairDirK, paste0("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_Above2SD_ByOverlap.pdf")), width = 12, height = 8 ) @@ -746,7 +746,7 @@ dev.off() pgg <- ggplotly(gg) #pgg -fname <- file.path(pairDirK, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_Above2SD_ByOverlap.html", sep = "")) +fname <- file.path(pairDirK, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_Above2SD_ByOverlap.html")) htmlwidgets::saveWidget(pgg, fname) #5 @@ -797,15 +797,15 @@ gg <- ggplot(data = X_abovethreshold, aes( SD_1 = Z_lm_K_SD_X1, SD_2 = Z_lm_K_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, "vs.", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirK, paste("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold.pdf", sep = "")), + file.path(pairDirK, paste0("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold.pdf")), width = 12, height = 8 ) @@ -814,7 +814,7 @@ gg dev.off() pgg <- ggplotly(gg) #pgg -fname <- file.path(pairDirK, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold.html", sep = "")) +fname <- file.path(pairDirK, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold.html")) htmlwidgets::saveWidget(pgg, fname) #6 @@ -829,16 +829,16 @@ gg <- ggplot(data = X_abovethreshold, aes( SD_1 = Z_lm_K_SD_X1, SD_2 = Z_lm_K_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_text(aes(label = Term_Avg), nudge_y = 0.25, size = 2) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3, size = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, " vs. ", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirK, paste("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_names.pdf", sep = "")), + file.path(pairDirK, paste0("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_names.pdf")), width = 20, height = 20 ) @@ -846,7 +846,7 @@ gg dev.off() pgg <- ggplotly(gg) #pgg -fname <- file.path(pairDirK, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_names.html", sep = "")) +fname <- file.path(pairDirK, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_names.html")) htmlwidgets::saveWidget(pgg, fname) #7 @@ -866,16 +866,16 @@ gg <- ggplot(data = X_abovethreshold, aes( SD_1 = Z_lm_K_SD_X1, SD_2 = Z_lm_K_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_text(aes(label = X1_Rank), nudge_y = 0.25, size = 4) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3, size = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, "vs.", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirK, paste("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX1.pdf", sep = "")), + file.path(pairDirK, paste0("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX1.pdf")), width = 15, height = 15 ) @@ -885,7 +885,7 @@ dev.off() pgg <- ggplotly(gg) #pgg fname <- - file.path(pairDirK, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX1.html", sep = "")) + file.path(pairDirK, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX1.html")) htmlwidgets::saveWidget(pgg, fname) #8 @@ -900,16 +900,16 @@ gg <- ggplot(data = X_abovethreshold, aes( SD_1 = Z_lm_K_SD_X1, SD_2 = Z_lm_K_SD_X2 )) + - xlab(paste("GO Term Avg lm Z for ", Name1, sep = "")) + + xlab(paste("GO Term Avg lm Z for", Name1)) + geom_text(aes(label = X2_Rank), nudge_y = 0.25, size = 4) + geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + geom_point(shape = 3, size = 3) + - ylab(paste("GO Term Avg lm Z for ", Name2, sep = "")) + - ggtitle(paste("Comparing Average GO Term Z lm for ", Name1, " vs. ", Name2, sep = "")) + + ylab(paste("GO Term Avg lm Z for", Name2)) + + ggtitle(paste("Comparing Average GO Term Z lm for", Name1, "vs.", Name2)) + theme_Publication_legend_right() pdf( - file.path(pairDirK, paste("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX2.pdf", sep = "")), + file.path(pairDirK, paste0("Scatter_lm_GTF_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX2.pdf")), width = 15, height = 15 ) @@ -919,17 +919,17 @@ dev.off() pgg <- ggplotly(gg) #pgg fname <- - file.path(pairDirK, paste("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX2.html", sep = "")) + file.path(pairDirK, paste0("Scatter_lm_GTA_Averages_", Name1, "_vs_", Name2, "_All_ByOverlap_AboveThreshold_numberedX2.html")) htmlwidgets::saveWidget(pgg, fname) write.csv( x = X, - file = file.path(pairDirK, paste("All_GTF_Avg_Scores_", Name1, "_vs_", Name2, ".csv", sep = "")), + file = file.path(pairDirK, paste0("All_GTF_Avg_Scores_", Name1, "_vs_", Name2, ".csv")), row.names = FALSE ) write.csv( x = X_abovethreshold, - file = file.path(pairDirK, paste("AboveThreshold_GTF_Avg_Scores_", Name1, "_vs_", Name2, ".csv", sep = "")), + file = file.path(pairDirK, paste0("AboveThreshold_GTF_Avg_Scores_", Name1, "_vs_", Name2, ".csv")), row.names = FALSE ) diff --git a/workflow/apps/r/TSHeatmaps5dev2.R b/workflow/apps/r/TSHeatmaps5dev2.R index 2bf6349a..b76ad9aa 100644 --- a/workflow/apps/r/TSHeatmaps5dev2.R +++ b/workflow/apps/r/TSHeatmaps5dev2.R @@ -44,7 +44,7 @@ Terms <- read.delim(file = sgd_terms_tfile, col.names = c("GO_ID", "GO_Term", "GO_Aspect", "GO_Term_Definition") ) XX3 <- read.csv(file = all_sgd_terms_csv, stringsAsFactors = FALSE, header = TRUE) -XX3[, 1] <- paste("GO:", formatC(XX3[, 1], width = 7, flag = "0"), sep = "") +XX3[, 1] <- paste0("GO:", formatC(XX3[, 1], width = 7, flag = "0")) XX3[, 2] <- gsub(pattern = " ", replacement = "_", x = XX3[, 2]) XX3[, 2] <- gsub(pattern = "/", replacement = "_", x = XX3[, 2]) @@ -84,7 +84,7 @@ if (length(study_nums) > 0) { X1$Rank_L <- rank(X1$Z_lm_L) X1$Rank_K <- rank(X1$Z_lm_K) X1 <- X1[order(X1$OrfRep, decreasing = FALSE), ] - colnames(X1) <- paste(colnames(X1), "_X1", sep = "") + colnames(X1) <- paste0(colnames(X1), "_X1") } if (length(study_nums) > 1) { @@ -111,7 +111,7 @@ if (length(study_nums) > 1) { X2$Rank_K <- rank(X2$Z_lm_K) X2 <- X2[order(X2$OrfRep, decreasing = FALSE), ] - colnames(X2) <- paste(colnames(X2), "_X2", sep = "") + colnames(X2) <- paste0(colnames(X2), "_X2") X <- cbind(X1, X2) } @@ -138,7 +138,7 @@ if (length(study_nums) > 2) { X3$Rank_L <- rank(X3$Z_lm_L) X3$Rank_K <- rank(X3$Z_lm_K) X3 <- X3[order(X3$OrfRep, decreasing = FALSE), ] - colnames(X3) <- paste(colnames(X3), "_X3", sep = "") + colnames(X3) <- paste0(colnames(X3), "_X3") X <- cbind(X, X3) } @@ -165,7 +165,7 @@ if (length(study_nums) > 3) { X4$Rank_L <- rank(X4$Z_lm_L) X4$Rank_K <- rank(X4$Z_lm_K) X4 <- X4[order(X4$OrfRep, decreasing = FALSE), ] - colnames(X4) <- paste(colnames(X4), "_X4", sep = "") + colnames(X4) <- paste0(colnames(X4), "_X4") X <- cbind(X, X4) } @@ -192,7 +192,7 @@ if (length(study_nums) > 4) { X5$Rank_L <- rank(X5$Z_lm_L) X5$Rank_K <- rank(X5$Z_lm_K) X5 <- X5[order(X5$OrfRep, decreasing = FALSE), ] - colnames(X5) <- paste(colnames(X5), "_X5", sep = "") + colnames(X5) <- paste0(colnames(X5), "_X5") X <- cbind(X, X5) } @@ -441,7 +441,7 @@ for (s in 1:dim(XX3)[1]) { if (Parent_Size > 2000) { pdf( - file = file.path(output_dir, paste(XX3[s, 2], ".pdf", sep = "")), + file = file.path(output_dir, paste0(XX3[s, 2], ".pdf")), width = 12, height = 45, onefile = TRUE @@ -477,7 +477,7 @@ for (s in 1:dim(XX3)[1]) { if (Parent_Size >= 1000 && Parent_Size <= 2000) { pdf( - file = file.path(output_dir, paste(XX3[s, 2], ".pdf", sep = "")), + file = file.path(output_dir, paste0(XX3[s, 2], ".pdf")), width = 12, height = 35, onefile = TRUE @@ -513,7 +513,7 @@ for (s in 1:dim(XX3)[1]) { if (Parent_Size >= 500 && Parent_Size <= 1000) { pdf( - file = file.path(output_dir, paste(XX3[s, 2], ".pdf", sep = "")), + file = file.path(output_dir, paste0(XX3[s, 2], ".pdf")), width = 12, height = 30, onefile = TRUE @@ -549,7 +549,7 @@ for (s in 1:dim(XX3)[1]) { if (Parent_Size >= 200 && Parent_Size <= 500) { pdf( - file = file.path(output_dir, paste(XX3[s, 2], ".pdf", sep = "")), + file = file.path(output_dir, paste0(XX3[s, 2], ".pdf")), width = 12, height = 25, onefile = TRUE @@ -585,7 +585,7 @@ for (s in 1:dim(XX3)[1]) { if (Parent_Size >= 100 && Parent_Size <= 200) { pdf( - file = file.path(output_dir, paste(XX3[s, 2], ".pdf", sep = "")), + file = file.path(output_dir, paste0(XX3[s, 2], ".pdf")), width = 12, height = 20, onefile = TRUE @@ -621,7 +621,7 @@ for (s in 1:dim(XX3)[1]) { if (Parent_Size >= 60 && Parent_Size <= 100) { pdf( - file = file.path(output_dir, paste(XX3[s, 2], ".pdf", sep = "")), + file = file.path(output_dir, paste0(XX3[s, 2], ".pdf")), width = 12, height = 15, onefile = TRUE @@ -657,7 +657,7 @@ for (s in 1:dim(XX3)[1]) { if (Parent_Size >= 30 && Parent_Size <= 60) { pdf( - file = file.path(output_dir, paste(XX3[s, 2], ".pdf", sep = "")), + file = file.path(output_dir, paste0(XX3[s, 2], ".pdf")), width = 12, height = 10, onefile = TRUE @@ -709,7 +709,7 @@ for (s in 1:dim(XX3)[1]) { if (Parent_Size >= 3 && Parent_Size <= 30) { pdf( - file = file.path(output_dir, paste(XX3[s, 2], ".pdf", sep = "")), + file = file.path(output_dir, paste0(XX3[s, 2], ".pdf")), width = 12, height = 7, onefile = TRUE @@ -760,7 +760,7 @@ for (s in 1:dim(XX3)[1]) { if (Parent_Size == 2) { pdf( - file = file.path(output_dir, paste(XX3[s, 2], ".pdf", sep = "")), + file = file.path(output_dir, paste0(XX3[s, 2], ".pdf")), width = 12, height = 7, onefile = TRUE diff --git a/workflow/apps/r/createHeatMaps.R b/workflow/apps/r/createHeatMaps.R index dcb3d4c2..435afaa9 100644 --- a/workflow/apps/r/createHeatMaps.R +++ b/workflow/apps/r/createHeatMaps.R @@ -171,7 +171,7 @@ for (i in 1:num_unique_clusts) { if (cluster_length != 1) { X0 <- as.matrix(cluster_data[, 4:(length(hmapfile[1, ]) - 2)]) if (cluster_length >= 2001) { - mypath <- file.path(outDir, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(outDir, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 20, width = 15) heatmap.2( x = X0, @@ -191,7 +191,7 @@ for (i in 1:num_unique_clusts) { dev.off() } if (cluster_length >= 201 && cluster_length <= 2000) { - mypath <- file.path(outDir, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(outDir, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 15, width = 12) heatmap.2( x = X0, @@ -210,7 +210,7 @@ for (i in 1:num_unique_clusts) { dev.off() } if (cluster_length >= 150 && cluster_length <= 200) { - mypath <- file.path(outDir, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(outDir, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 12, width = 12) heatmap.2( x = X0, @@ -228,7 +228,7 @@ for (i in 1:num_unique_clusts) { dev.off() } if (cluster_length >= 101 && cluster_length <= 149) { - mypath <- file.path(outDir, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(outDir, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, mypath, height = 12, width = 12) heatmap.2( x = X0, @@ -246,7 +246,7 @@ for (i in 1:num_unique_clusts) { dev.off() } if (cluster_length >= 60 && cluster_length <= 100) { - mypath <- file.path(outDir, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(outDir, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 12, width = 12) heatmap.2( x = X0, @@ -264,7 +264,7 @@ for (i in 1:num_unique_clusts) { dev.off() } if (cluster_length <= 59 && cluster_length >= 30) { - mypath <- file.path(outDir, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(outDir, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 9, width = 12) heatmap.2( x = X0, @@ -282,7 +282,7 @@ for (i in 1:num_unique_clusts) { dev.off() } if (cluster_length <= 29) { - mypath <- file.path(outDir, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(outDir, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 7, width = 12) heatmap.2( x = X0, diff --git a/workflow/apps/r/createHeatMapsHomology.R b/workflow/apps/r/createHeatMapsHomology.R index 3d22c90a..e33f9c37 100644 --- a/workflow/apps/r/createHeatMapsHomology.R +++ b/workflow/apps/r/createHeatMapsHomology.R @@ -45,11 +45,11 @@ hmapfile_w_homolog <- full_join(hmapfile_map, mapping, by = c("ORFMatch" = "ense hmapfile_w_homolog <- hmapfile_w_homolog[is.na(hmapfile_w_homolog$likelihood) == FASLE, ] # Write csv with all info from mapping file -write.csv(hmapfile_w_homolog, file.path(output_path, paste(final_table, "_WithHomologAll.csv", sep = "")), row.names = FALSE) +write.csv(hmapfile_w_homolog, file.path(output_path, paste0(final_table, "_WithHomologAll.csv")), row.names = FALSE) # Remove the non matches and output another mapping file - this is also one used to make heatmaps hmapfile_w_homolog <- hmapfile_w_homolog[is.na(hmapfile_w_homolog$external_gene_name_Human) == FALSE, ] -write.csv(hmapfile_w_homolog, file.path(output_path, paste(final_table, "_WithHomologMatchesOnly.csv", sep = ""), row.names = FALSE)) +write.csv(hmapfile_w_homolog, file.path(output_path, paste0(final_table, "_WithHomologMatchesOnly.csv"), row.names = FALSE)) # Add human gene name to the Gene column hmapfile_w_homolog$Gene <- paste(hmapfile_w_homolog$Gene, hmapfile_w_homolog$external_gene_name_Human, sep = "/") @@ -230,7 +230,7 @@ for (i in 1:num_unique_clusts) { if (cluster_length != 1) { X0 <- as.matrix(cluster_data[, 4:(length(hmapfile[1, ]) - 6)]) if (cluster_length >= 2001) { - mypath <- file.path(output_path, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(output_path, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 20, width = 15) heatmap.2( x = X0, @@ -250,7 +250,7 @@ for (i in 1:num_unique_clusts) { dev.off() } if (cluster_length >= 201 && cluster_length <= 2000) { - mypath <- file.path(output_path, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(output_path, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 15, width = 12) heatmap.2( x = X0, @@ -269,7 +269,7 @@ for (i in 1:num_unique_clusts) { dev.off() } if (cluster_length >= 150 && cluster_length <= 200) { - mypath <- file.path(output_path, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(output_path, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 12, width = 12) heatmap.2( x = X0, @@ -287,7 +287,7 @@ for (i in 1:num_unique_clusts) { dev.off() } if (cluster_length >= 101 && cluster_length <= 149) { - mypath <- file.path(output_path, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(output_path, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 12, width = 12) heatmap.2( x = X0, @@ -305,7 +305,7 @@ for (i in 1:num_unique_clusts) { dev.off() } if (cluster_length >= 60 && cluster_length <= 100) { - mypath <- file.path(output_path, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(output_path, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 12, width = 12) heatmap.2( x = X0, @@ -323,7 +323,7 @@ for (i in 1:num_unique_clusts) { dev.off() } if (cluster_length <= 59 && cluster_length >= 30) { - mypath <- file.path(output_path, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(output_path, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 9, width = 12) heatmap.2( x = X0, @@ -341,7 +341,7 @@ for (i in 1:num_unique_clusts) { dev.off() } if (cluster_length <= 29) { - mypath <- file.path(output_path, paste("cluster_", gsub(" ", "", cluster), ".pdf", sep = "")) + mypath <- file.path(output_path, paste0("cluster_", gsub(" ", "", cluster), ".pdf")) pdf(file = mypath, height = 7, width = 12) heatmap.2( x = X0, diff --git a/workflow/apps/r/interactions.R b/workflow/apps/r/interactions.R index 4b298358..665362d9 100644 --- a/workflow/apps/r/interactions.R +++ b/workflow/apps/r/interactions.R @@ -1,22 +1,23 @@ #!/usr/bin/env Rscript -# NOTE: The script now has 6 optional arguments: -# 1. Path to input easy results file -# 2. /output/ directory -# 3. Path to StudyInfo.csv -# 4. Path to sgd_gene_list -# 5. The experiment number (Exp# directory) -# 6. Standard deviation value -library("ggplot2") -library("plyr") -library("extrafont") -library("gridExtra") -library("gplots") -library("RColorBrewer") -library("stringr") -library("gdata") -library("plotly") -library("htmlwidgets") +suppressMessages(library("ggplot2")) +suppressMessages(library("plyr")) +suppressMessages(library("extrafont")) +suppressMessages(library("gridExtra")) +suppressMessages(library("gplots")) +suppressMessages(library("RColorBrewer")) +suppressMessages(library("stringr")) +suppressMessages(library("gdata")) +suppressMessages(library("plotly")) +suppressMessages(library("htmlwidgets")) + +# Print extra debugging during development +options(error = quote({ + dump.frames(to.file = TRUE, dumpto = "last.dump") + load("last.dump.rda") + print(last.dump) + q() +})) # Parse arguments args <- commandArgs(TRUE) @@ -66,10 +67,10 @@ df <- df[!(df[[1]] %in% c("", "Scan")), ] df$col <- as.numeric(df$Col) df$row <- as.numeric(df$Row) df$l <- as.numeric(df$l) -df$k <- as.numeric(df$K) +df$K <- as.numeric(df$K) df$r <- as.numeric(df$r) -df$scan <- as.numeric(df$Scan) -df$auc <- as.numeric(df$AUC) +df$Scan <- as.numeric(df$Scan) +df$AUC <- as.numeric(df$AUC) df$last_bg <- as.numeric(df$LstBackgrd) df$first_bg <- as.numeric(df$X1stBackgrd) @@ -129,7 +130,7 @@ df <- df[df$Gene != "blank", ] # Use sgd_gene_list to update orfs and replace empty geneName cells with ORF name (adapted from Sean's Merge script). # This is to 'fix' the naming for everything that follows (REMc, Heatmaps ... et.al) rather than do it piece meal later # Sean's Match Script( which was adapted here) was fixed 2022_0608 so as not to overwrite the RF1&RF2 geneNames -# in the z_lm_l, k, r&auc output values. Values correlated well but were off by a multiplier factor. +# in the z_lm_l, K, r&AUC output values. Values correlated well but were off by a multiplier factor. genes <- data.frame(read.delim( file = sgd_gene_list, quote = "", header = FALSE, colClasses = c(rep("NULL", 3), rep("character", 2), rep("NULL", 11)))) for (i in 1:length(df[, 14])) { @@ -186,17 +187,6 @@ theme_publication <- function(base_size = 14, base_family = "sans") { ) } -scale_fill_publication <- function(...) { - library(scales) - discrete_scale("fill", "Publication", manual_pal( - values = c("#386cb0", "#fdb462", "#7fc97f", "#ef3b2c", "#662506", "#a6cee3", "#fb9a99", "#984ea3", "#ffff33")), ...) -} - -scale_colour_publication <- function(...) { - discrete_scale("colour", "Publication", manual_pal( - values = c("#386cb0", "#fdb462", "#7fc97f", "#ef3b2c", "#662506", "#a6cee3", "#fb9a99", "#984ea3", "#ffff33")), ...) -} - theme_publication_legend_right <- function(base_size = 14, base_family = "sans") { (theme_foundation(base_size = base_size, base_family = base_family) + theme(plot.title = element_text(face = "bold", size = rel(1.2), hjust = 0.5), @@ -226,17 +216,25 @@ theme_publication_legend_right <- function(base_size = 14, base_family = "sans") } scale_fill_publication <- function(...) { - discrete_scale("fill", "Publication", manual_pal( - values = c("#386cb0", "#fdb462", "#7fc97f", "#ef3b2c", "#662506", "#a6cee3", "#fb9a99", "#984ea3", "#ffff33")), ...) + discrete_scale( + "fill", + "Publication", + manual_pal(values = c("#386cb0", "#fdb462", "#7fc97f", "#ef3b2c", + "#662506", "#a6cee3", "#fb9a99", "#984ea3", "#ffff33")), + ... + ) } scale_colour_publication <- function(...) { - discrete_scale("colour", "Publication", manual_pal( - values = c("#386cb0", "#fdb462", "#7fc97f", "#ef3b2c", "#662506", "#a6cee3", "#fb9a99", "#984ea3", "#ffff33")), ...) + discrete_scale( + "colour", + "Publication", + manual_pal(values = c("#386cb0", "#fdb462", "#7fc97f", "#ef3b2c", + "#662506", "#a6cee3", "#fb9a99", "#984ea3", "#ffff33")), + ... + ) } -# Print timestamp for initial time the code starts -timestamp() # Begin QC Section # Part 2 - Quality control @@ -253,22 +251,22 @@ plate_analysis_l <- fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary(fun = mean, geom = "point", size = 0.6) + - ggtitle("Plate analysis by Drug Conc for L before quality control") + theme_publication() + ggtitle("Plate analysis by Drug Conc for L before quality control") + + theme_publication() plate_analysis_k <- - ggplot(df, aes(Scan, k, color = as.factor(conc_num))) + + ggplot(df, aes(Scan, K, color = as.factor(conc_num))) + geom_point(shape = 3, size = 0.2) + stat_summary( fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary(fun = mean, geom = "point", size = 0.6) + - ggtitle("Plate analysis by Drug Conc for K before quality control") + theme_publication() + ggtitle("Plate analysis by Drug Conc for K before quality control") + + theme_publication() plate_analysis_r <- ggplot(df, aes(Scan, r, color = as.factor(conc_num))) + @@ -277,22 +275,22 @@ plate_analysis_r <- fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary(fun = mean, geom = "point", size = 0.6) + - ggtitle("Plate analysis by Drug Conc for r before quality control") + theme_publication() + ggtitle("Plate analysis by Drug Conc for r before quality control") + + theme_publication() plate_analysis_auc <- - ggplot(df, aes(Scan, auc, color = as.factor(conc_num))) + + ggplot(df, aes(Scan, AUC, color = as.factor(conc_num))) + geom_point(shape = 3, size = 0.2) + stat_summary( fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary(fun = mean, geom = "point", size = 0.6) + - ggtitle("Plate analysis by Drug Conc for auc before quality control") + theme_publication() + ggtitle("Plate analysis by Drug Conc for AUC before quality control") + + theme_publication() plate_analysis_l_box <- ggplot(df, aes(as.factor(Scan), l, color = as.factor(conc_num))) + @@ -301,7 +299,7 @@ plate_analysis_l_box <- theme_publication() plate_analysis_k_box <- - ggplot(df, aes(as.factor(Scan), k, color = as.factor(conc_num))) + + ggplot(df, aes(as.factor(Scan), K, color = as.factor(conc_num))) + geom_boxplot() + ggtitle("Plate analysis by Drug Conc for K before quality control") + theme_publication() @@ -313,9 +311,9 @@ plate_analysis_r_box <- theme_publication() plate_analysis_auc_box <- - ggplot(df, aes(as.factor(Scan), auc, color = as.factor(conc_num))) + + ggplot(df, aes(as.factor(Scan), AUC, color = as.factor(conc_num))) + geom_boxplot() + - ggtitle("Plate analysis by Drug Conc for auc before quality control") + + ggtitle("Plate analysis by Drug Conc for AUC before quality control") + theme_publication() # Quality control - values with a high delta background likely have heavy contamination @@ -326,7 +324,7 @@ df$delta_bg <- df$last_bg - df$first_bg # Raw l vs k before QC raw_l_vs_k_before_qc <- - ggplot(df, aes(l, k, color = as.factor(conc_num))) + + ggplot(df, aes(l, K, color = as.factor(conc_num))) + geom_point(aes(ORF = ORF, Gene = Gene, delta_bg = delta_bg), shape = 3) + ggtitle("Raw L vs K before QC") + theme_publication_legend_right() @@ -334,7 +332,7 @@ raw_l_vs_k_before_qc <- pdf(file.path(out_dir_qc, "raw_l_vs_k_before_qc.pdf"), width = 12, height = 8) raw_l_vs_k_before_qc -dev.off() +invisible(dev.off()) pgg <- ggplotly(raw_l_vs_k_before_qc) plotly_path <- file.path(out_dir_qc, "raw_l_vs_k_before_qc.html") @@ -352,8 +350,7 @@ plate_analysis_delta_bg <- fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary(fun = mean, geom = "point", size = 0.6) + ggtitle("Plate analysis by Drug Conc for delta_bg before quality control") + theme_publication() @@ -367,42 +364,49 @@ plate_analysis_delta_bg_box <- x_delta_bg_above_tolerance <- df[df$delta_bg >= delta_background_tolerance, ] x_delta_bg_above_tolerance_k_halfmedian <- - (median(x_delta_bg_above_tolerance$k, na.rm = TRUE)) / 2 + (median(x_delta_bg_above_tolerance$K, na.rm = TRUE)) / 2 x_delta_bg_above_tolerance_l_halfmedian <- (median(x_delta_bg_above_tolerance$l, na.rm = TRUE)) / 2 x_delta_bg_above_tolerance_to_remove <- dim(x_delta_bg_above_tolerance)[1] x_delta_bg_above_tolerance_l_vs_k <- - ggplot(x_delta_bg_above_tolerance, aes(l, k, color = as.factor(conc_num))) + + ggplot(x_delta_bg_above_tolerance, aes(l, K, color = as.factor(conc_num))) + geom_point(aes(ORF = ORF, Gene = Gene, delta_bg = delta_bg), shape = 3) + ggtitle(paste("Raw L vs K for strains above delta background threshold of", delta_background_tolerance, "or above")) + - annotate("text", x = x_delta_bg_above_tolerance_l_halfmedian, y = x_delta_bg_above_tolerance_k_halfmedian, - label = paste("Strains above delta background tolerance = ", x_delta_bg_above_tolerance_to_remove) - ) + + annotate("text", + x = x_delta_bg_above_tolerance_l_halfmedian, + y = x_delta_bg_above_tolerance_k_halfmedian, + label = paste("Strains above delta background tolerance = ", x_delta_bg_above_tolerance_to_remove)) + theme_publication_legend_right() pdf(file.path(out_dir_qc, "raw_l_vs_k_for_strains_above_delta_background_threshold.pdf"), width = 12, height = 8) x_delta_bg_above_tolerance_l_vs_k -dev.off() +invisible(dev.off()) pgg <- ggplotly(x_delta_bg_above_tolerance_l_vs_k) plotly_path <- file.path(out_dir_qc, "raw_l_vs_k_for_strains_above_delta_background_threshold.html") saveWidget(pgg, file = plotly_path, selfcontained = TRUE) # Frequency plot for all data vs. the delta_background -delta_bg_frequency_plot <- ggplot(df, aes(delta_bg, color = as.factor(conc_num))) + geom_density() + - ggtitle("Density plot for Delta Background by Conc All Data") + theme_publication_legend_right() +delta_bg_frequency_plot <- + ggplot(df, aes(delta_bg, color = as.factor(conc_num))) + + geom_density() + + ggtitle("Density plot for Delta Background by Conc All Data") + + theme_publication_legend_right() # Bar plot for all data vs. the delta_background -delta_bg_bar_plot <- ggplot(df, aes(delta_bg, color = as.factor(conc_num))) + geom_bar() + - ggtitle("Bar plot for Delta Background by Conc All Data") + theme_publication_legend_right() +delta_bg_bar_plot <- + ggplot(df, aes(delta_bg, color = as.factor(conc_num))) + + geom_bar() + + ggtitle("Bar plot for Delta Background by Conc All Data") + + theme_publication_legend_right() pdf(file.path(out_dir_qc, "frequency_delta_background.pdf"), width = 12, height = 8) -print(delta_bg_frequency_plot) -print(delta_bg_bar_plot) -dev.off() +# print(delta_bg_frequency_plot) +# print(delta_bg_bar_plot) +invisible(dev.off()) # Need to identify missing data, and differentiate between this data and removed data # so the removed data can get set to NA and the missing data can get set to max theoretical values @@ -416,42 +420,42 @@ try(df[df$l == 0 & !is.na(df$l), ]$NG <- 1) df$DB <- 0 try(df[df$delta_bg >= delta_background_tolerance, ]$DB <- 1) -# Replace the CPPs for l, r, auc and k (must be last!) for removed data +# Replace the CPPs for l, r, AUC and k (must be last!) for removed data try(df[df$delta_bg >= delta_background_tolerance, ]$l <- NA) try(df[df$delta_bg >= delta_background_tolerance, ]$r <- NA) -try(df[df$delta_bg >= delta_background_tolerance, ]$auc <- NA) -try(df[df$delta_bg >= delta_background_tolerance, ]$k <- NA) +try(df[df$delta_bg >= delta_background_tolerance, ]$AUC <- NA) +try(df[df$delta_bg >= delta_background_tolerance, ]$K <- NA) # QC Plots -plate_analysis_l_after_qc <- ggplot(df, aes(Scan, l, color = as.factor(conc_num))) + geom_point(shape = 3, size = 0.2) + - stat_summary( - fun = mean, - fun.min = function(x) mean(x) - sd(x), - fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + - stat_summary( - fun = mean, - geom = "point", - size = 0.6 - ) + - ggtitle("Plate analysis by Drug Conc for L after quality control") + theme_publication() - -plate_analysis_k_after_qc <- - ggplot(df, aes(Scan, k, color = as.factor(conc_num))) + +plate_analysis_l_after_qc <- + ggplot(df, aes(Scan, l, color = as.factor(conc_num))) + geom_point(shape = 3, size = 0.2) + stat_summary( fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary( fun = mean, geom = "point", - size = 0.6 - ) + - ggtitle("Plate analysis by Drug Conc for k after quality control") + theme_publication() + size = 0.6) + + ggtitle("Plate analysis by Drug Conc for L after quality control") + + theme_publication() + +plate_analysis_k_after_qc <- + ggplot(df, aes(Scan, K, color = as.factor(conc_num))) + + geom_point(shape = 3, size = 0.2) + + stat_summary( + fun = mean, + fun.min = function(x) mean(x) - sd(x), + fun.max = function(x) mean(x) + sd(x), + geom = "errorbar") + + stat_summary( + fun = mean, + geom = "point", + size = 0.6) + + ggtitle("Plate analysis by Drug Conc for k after quality control") + + theme_publication() plate_analysis_r_after_qc <- ggplot(df, aes(Scan, r, color = as.factor(conc_num))) + @@ -460,30 +464,28 @@ plate_analysis_r_after_qc <- fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary( fun = mean, geom = "point", - size = 0.6 - ) + - ggtitle("Plate analysis by Drug Conc for r after quality control") + theme_publication() + size = 0.6) + + ggtitle("Plate analysis by Drug Conc for r after quality control") + + theme_publication() plate_analysis_auc_after_qc <- - ggplot(df, aes(Scan, auc, color = as.factor(conc_num))) + + ggplot(df, aes(Scan, AUC, color = as.factor(conc_num))) + geom_point(shape = 3, size = 0.2) + stat_summary( fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary( fun = mean, geom = "point", - size = 0.6 - ) + - ggtitle("Plate analysis by Drug Conc for auc after quality control") + theme_publication() + size = 0.6) + + ggtitle("Plate analysis by Drug Conc for AUC after quality control") + + theme_publication() plate_analysis_delta_bg_after_qc <- ggplot(df, aes(Scan, delta_bg, color = as.factor(conc_num))) + @@ -492,13 +494,11 @@ plate_analysis_delta_bg_after_qc <- fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary( fun = mean, geom = "point", - size = 0.6 - ) + + size = 0.6) + ggtitle("Plate analysis by Drug Conc for delta_bg after quality control") + theme_publication() @@ -509,7 +509,7 @@ plate_analysis_l_box_after_qc <- theme_publication() plate_analysis_k_box_after_qc <- - ggplot(df, aes(as.factor(Scan), k, color = as.factor(conc_num))) + + ggplot(df, aes(as.factor(Scan), K, color = as.factor(conc_num))) + geom_boxplot() + ggtitle("Plate analysis by Drug Conc for K after quality control") + theme_publication() @@ -521,9 +521,9 @@ plate_analysis_r_box_after_qc <- theme_publication() plate_analysis_auc_box_after_qc <- - ggplot(df, aes(as.factor(Scan), auc, color = as.factor(conc_num))) + + ggplot(df, aes(as.factor(Scan), AUC, color = as.factor(conc_num))) + geom_boxplot() + - ggtitle("Plate analysis by Drug Conc for auc after quality control") + + ggtitle("Plate analysis by Drug Conc for AUC after quality control") + theme_publication() plate_analysis_delta_bg_box_after_qc <- @@ -544,7 +544,7 @@ plate_analysis_auc plate_analysis_auc_after_qc plate_analysis_delta_bg plate_analysis_delta_bg_after_qc -dev.off() +invisible(dev.off()) # Print the plate analysis data before and after QC pdf(file.path(out_dir_qc, "plate_analysis_boxplots.pdf"), width = 18, height = 9) @@ -558,7 +558,7 @@ plate_analysis_auc_box plate_analysis_auc_box_after_qc plate_analysis_delta_bg_box plate_analysis_delta_bg_box_after_qc -dev.off() +invisible(dev.off()) # Remove the zero values and print plate analysis x_no_zero <- df[which(df$l > 0), ] @@ -569,30 +569,26 @@ plate_analysis_l_after_qc_z <- fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary( fun = mean, geom = "point", - size = 0.6 - ) + + size = 0.6) + ggtitle("Plate analysis by Drug Conc for L after quality control") + theme_publication() plate_analysis_k_after_qc_z <- - ggplot(x_no_zero, aes(Scan, k, color = as.factor(conc_num))) + + ggplot(x_no_zero, aes(Scan, K, color = as.factor(conc_num))) + geom_point(shape = 3, size = 0.2) + stat_summary( fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary( fun = mean, geom = "point", - size = 0.6 - ) + + size = 0.6) + ggtitle("Plate analysis by Drug Conc for K after quality control") + theme_publication() @@ -603,31 +599,27 @@ plate_analysis_r_after_qc_z <- fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary( fun = mean, geom = "point", - size = 0.6 - ) + + size = 0.6) + ggtitle("Plate analysis by Drug Conc for r after quality control") + theme_publication() plate_analysis_auc_after_qc_z <- - ggplot(x_no_zero, aes(Scan, auc, color = as.factor(conc_num))) + + ggplot(x_no_zero, aes(Scan, AUC, color = as.factor(conc_num))) + geom_point(shape = 3, size = 0.2) + stat_summary( fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary( fun = mean, geom = "point", - size = 0.6 - ) + - ggtitle("Plate analysis by Drug Conc for auc after quality control") + + size = 0.6) + + ggtitle("Plate analysis by Drug Conc for AUC after quality control") + theme_publication() plate_analysis_delta_bg_after_qc_z <- @@ -637,13 +629,11 @@ plate_analysis_delta_bg_after_qc_z <- fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar" - ) + + geom = "errorbar") + stat_summary( fun = mean, geom = "point", - size = 0.6 - ) + + size = 0.6) + ggtitle("Plate analysis by Drug Conc for delta_bg after quality control") + theme_publication() @@ -654,7 +644,7 @@ plate_analysis_l_box_after_qc_z <- theme_publication() plate_analysis_k_box_after_qc_z <- - ggplot(x_no_zero, aes(as.factor(Scan), k, color = as.factor(conc_num))) + + ggplot(x_no_zero, aes(as.factor(Scan), K, color = as.factor(conc_num))) + geom_boxplot() + ggtitle("Plate analysis by Drug Conc for K after quality control") + theme_publication() @@ -666,9 +656,9 @@ plate_analysis_r_box_after_qc_z <- theme_publication() plate_analysis_auc_box_after_qc_z <- - ggplot(x_no_zero, aes(as.factor(Scan), auc, color = as.factor(conc_num))) + + ggplot(x_no_zero, aes(as.factor(Scan), AUC, color = as.factor(conc_num))) + geom_boxplot() + - ggtitle("Plate analysis by Drug Conc for auc after quality control") + + ggtitle("Plate analysis by Drug Conc for AUC after quality control") + theme_publication() plate_analysis_delta_bg_box_after_qc_z <- @@ -684,7 +674,7 @@ plate_analysis_k_after_qc_z plate_analysis_r_after_qc_z plate_analysis_auc_after_qc_z plate_analysis_delta_bg_after_qc_z -dev.off() +invisible(dev.off()) # Print the plate analysis data before and after QC pdf(file.path(out_dir_qc, "plate_analysis_no_zeros_boxplots.pdf"), width = 18, height = 9) @@ -693,7 +683,7 @@ plate_analysis_k_box_after_qc_z plate_analysis_r_box_after_qc_z plate_analysis_auc_box_after_qc_z plate_analysis_delta_bg_box_after_qc_z -dev.off() +invisible(dev.off()) # Remove dataset with zeros removed rm(x_no_zero) @@ -712,11 +702,11 @@ x_stats_all <- ddply( min_l = min(l, na.rm = TRUE), sd_l = sd(l, na.rm = TRUE), se_l = sd_l / sqrt(N - 1), - mean_k = mean(k, na.rm = TRUE), - median_k = median(k, na.rm = TRUE), - max_k = max(k, na.rm = TRUE), - min_k = min(k, na.rm = TRUE), - sd_k = sd(k, na.rm = TRUE), + mean_k = mean(K, na.rm = TRUE), + median_k = median(K, na.rm = TRUE), + max_k = max(K, na.rm = TRUE), + min_k = min(K, na.rm = TRUE), + sd_k = sd(K, na.rm = TRUE), se_k = sd_k / sqrt(N - 1), mean_r = mean(r, na.rm = TRUE), median_r = median(r, na.rm = TRUE), @@ -724,11 +714,11 @@ x_stats_all <- ddply( min_r = min(r, na.rm = TRUE), sd_r = sd(r, na.rm = TRUE), se_r = sd_r / sqrt(N - 1), - mean_auc = mean(auc, na.rm = TRUE), - median_auc = median(auc, na.rm = TRUE), - max_auc = max(auc, na.rm = TRUE), - min_auc = min(auc, na.rm = TRUE), - sd_auc = sd(auc, na.rm = TRUE), + mean_auc = mean(AUC, na.rm = TRUE), + median_auc = median(AUC, na.rm = TRUE), + max_auc = max(AUC, na.rm = TRUE), + min_auc = min(AUC, na.rm = TRUE), + sd_auc = sd(AUC, na.rm = TRUE), se_auc = sd_auc / sqrt(N - 1) ) @@ -750,14 +740,14 @@ for (s in background_strains) { # we may want to consider in some cases giving the max high value to L depending on the data type if (table(x_background$l)[1] == 0) { x_background[x_background$l == 0, ]$l <- NA - x_background[x_background$k == 0, ]$k <- NA + x_background[x_background$K == 0, ]$K <- NA x_background[x_background$r == 0, ]$r <- NA - x_background[x_background$auc == 0, ]$auc <- NA + x_background[x_background$AUC == 0, ]$AUC <- NA } x_background <- x_background[!is.na(x_background$l), ] - # Get summary stats for L, k, R, auc + # Get summary stats for L, K, R, AUC x_stats_by_l <- ddply( x_background, c("OrfRep", "conc_num", "conc_num_factor"), @@ -771,19 +761,19 @@ for (s in background_strains) { se = sd / sqrt(N - 1) ) - print(x_stats_by_l) + # print(x_stats_by_l) x1_sd <- max(x_stats_by_l$sd) x_stats_by_k <- ddply( x_background, c("OrfRep", "conc_num", "conc_num_factor"), summarise, - N = (length(k)), - mean = mean(k, na.rm = TRUE), - median = median(k, na.rm = TRUE), - max = max(k, na.rm = TRUE), - min = min(k, na.rm = TRUE), - sd = sd(k, na.rm = TRUE), + N = (length(K)), + mean = mean(K, na.rm = TRUE), + median = median(K, na.rm = TRUE), + max = max(K, na.rm = TRUE), + min = min(K, na.rm = TRUE), + sd = sd(K, na.rm = TRUE), se = sd / sqrt(N - 1) ) @@ -808,12 +798,12 @@ for (s in background_strains) { x_background, c("OrfRep", "conc_num", "conc_num_factor"), summarise, - N = length(auc), - mean = mean(auc, na.rm = TRUE), - median = median(auc, na.rm = TRUE), - max = max(auc, na.rm = TRUE), - min = min(auc, na.rm = TRUE), - sd = sd(auc, na.rm = TRUE), + N = length(AUC), + mean = mean(AUC, na.rm = TRUE), + median = median(AUC, na.rm = TRUE), + max = max(AUC, na.rm = TRUE), + min = min(AUC, na.rm = TRUE), + sd = sd(AUC, na.rm = TRUE), se = sd / sqrt(N - 1) ) @@ -830,11 +820,11 @@ for (s in background_strains) { min_l = min(l, na.rm = TRUE), sd_l = sd(l, na.rm = TRUE), se_l = sd_l / sqrt(N - 1), - mean_k = mean(k, na.rm = TRUE), - median_k = median(k, na.rm = TRUE), - max_k = max(k, na.rm = TRUE), - min_k = min(k, na.rm = TRUE), - sd_k = sd(k, na.rm = TRUE), + mean_k = mean(K, na.rm = TRUE), + median_k = median(K, na.rm = TRUE), + max_k = max(K, na.rm = TRUE), + min_k = min(K, na.rm = TRUE), + sd_k = sd(K, na.rm = TRUE), se_k = sd_k / sqrt(N - 1), mean_r = mean(r, na.rm = TRUE), median_r = median(r, na.rm = TRUE), @@ -842,18 +832,18 @@ for (s in background_strains) { min_r = min(r, na.rm = TRUE), sd_r = sd(r, na.rm = TRUE), se_r = sd_r / sqrt(N - 1), - mean_auc = mean(auc, na.rm = TRUE), - median_auc = median(auc, na.rm = TRUE), - max_auc = max(auc, na.rm = TRUE), - min_l = min(auc, na.rm = TRUE), - sd_auc = sd(auc, na.rm = TRUE), + mean_auc = mean(AUC, na.rm = TRUE), + median_auc = median(AUC, na.rm = TRUE), + max_auc = max(AUC, na.rm = TRUE), + min_l = min(AUC, na.rm = TRUE), + sd_auc = sd(AUC, na.rm = TRUE), se_auc = sd_auc / sqrt(N - 1) ) write.csv(x_stats_by, file.path(out_dir, "summary_stats_background_strains.csv"), row.names = FALSE) # Calculate the max theoretical L values - # Only look for max values when k is within 2sd of the ref strain + # Only look for max values when K is within 2sd of the ref strain for (q in unique(df$conc_num_factor)) { if (q == 0) { x_within_2sd_k <- @@ -863,9 +853,9 @@ for (s in background_strains) { x_stats_temp_k <- x_stats_by_k[x_stats_by_k$conc_num_factor == q, ] x_within_2sd_k <- - x_within_2sd_k[x_within_2sd_k$k >= (x_stats_temp_k$mean[1] - (2 * x_stats_temp_k$sd[1])), ] + x_within_2sd_k[x_within_2sd_k$K >= (x_stats_temp_k$mean[1] - (2 * x_stats_temp_k$sd[1])), ] x_within_2sd_k <- - x_within_2sd_k[x_within_2sd_k$k <= (x_stats_temp_k$mean[1] + (2 * x_stats_temp_k$sd[1])), ] + x_within_2sd_k[x_within_2sd_k$K <= (x_stats_temp_k$mean[1] + (2 * x_stats_temp_k$sd[1])), ] x_outside_2sd_k <- df[df$conc_num_factor == q, ] x_outside_2sd_k <- @@ -874,10 +864,10 @@ for (s in background_strains) { # x_stats_by_k[x_stats_by_k$conc_num_factor == q, ] x_outside_2sd_k <- x_outside_2sd_k[ - x_outside_2sd_k$k <= (x_stats_temp_k$mean[1] - (2 * x_stats_temp_k$sd[1])) | - x_outside_2sd_k$k >= (x_stats_temp_k$mean[1] + (2 * x_stats_temp_k$sd[1])), ] + x_outside_2sd_k$K <= (x_stats_temp_k$mean[1] - (2 * x_stats_temp_k$sd[1])) | + x_outside_2sd_k$K >= (x_stats_temp_k$mean[1] + (2 * x_stats_temp_k$sd[1])), ] # x_outside_2sd_k <- - # x_outside_2sd_k[x_outside_2sd_k$k >= (x_stats_temp_k$mean[1] + (2*x_stats_temp_k$sd[1])), ] + # x_outside_2sd_k[x_outside_2sd_k$K >= (x_stats_temp_k$mean[1] + (2*x_stats_temp_k$sd[1])), ] } if (q > 0) { x_within_2sd_k_temp <- @@ -887,9 +877,9 @@ for (s in background_strains) { x_stats_temp_k <- x_stats_by_k[x_stats_by_k$conc_num_factor == q, ] x_within_2sd_k_temp <- - x_within_2sd_k_temp[x_within_2sd_k_temp$k >= (x_stats_temp_k$mean[1] - (2 * x_stats_temp_k$sd[1])), ] + x_within_2sd_k_temp[x_within_2sd_k_temp$K >= (x_stats_temp_k$mean[1] - (2 * x_stats_temp_k$sd[1])), ] x_within_2sd_k_temp <- - x_within_2sd_k_temp[x_within_2sd_k_temp$k <= (x_stats_temp_k$mean[1] + (2 * x_stats_temp_k$sd[1])), ] + x_within_2sd_k_temp[x_within_2sd_k_temp$K <= (x_stats_temp_k$mean[1] + (2 * x_stats_temp_k$sd[1])), ] x_within_2sd_k <- rbind(x_within_2sd_k, x_within_2sd_k_temp) x_outside_2sd_k_temp <- @@ -900,10 +890,10 @@ for (s in background_strains) { # x_stats_by_k[x_stats_by_k$conc_num_factor == q, ] x_outside_2sd_k_temp <- x_outside_2sd_k_temp[ - x_outside_2sd_k_temp$k <= (x_stats_temp_k$mean[1] - (2 * x_stats_temp_k$sd[1])) | - x_outside_2sd_k_temp$k >= (x_stats_temp_k$mean[1] + (2 * x_stats_temp_k$sd[1])), ] + x_outside_2sd_k_temp$K <= (x_stats_temp_k$mean[1] - (2 * x_stats_temp_k$sd[1])) | + x_outside_2sd_k_temp$K >= (x_stats_temp_k$mean[1] + (2 * x_stats_temp_k$sd[1])), ] # x_outside_2sd_k_temp <- - # x_outside_2sd_k_temp[x_outside_2sd_k_temp$k >= (x_stats_temp_k$mean[1] + (2*x_stats_temp_k$sd[1])) , ] + # x_outside_2sd_k_temp[x_outside_2sd_k_temp$K >= (x_stats_temp_k$mean[1] + (2*x_stats_temp_k$sd[1])) , ] x_outside_2sd_k <- rbind(x_outside_2sd_k, x_outside_2sd_k_temp) } @@ -923,7 +913,7 @@ for (s in background_strains) { z_max = (max - mean) / sd ) - print(x_stats_by_l_within_2sd_k) + # print(x_stats_by_l_within_2sd_k) x1_sd_within_2sd_k <- max(x_stats_by_l_within_2sd_k$sd) @@ -946,34 +936,34 @@ for (s in background_strains) { se = sd / sqrt(N - 1) ) - print(x_stats_by_l_outside_2sd_k) + # print(x_stats_by_l_outside_2sd_k) x1_sd_outside_2sd_k <- max(x_stats_by_l_outside_2sd_k$sd) # x1_sd_outside_2sd_k <- df[df$l %in% x1_sd_within_2sd_k$l, ] outside_2sd_k_l_vs_k <- - ggplot(x_outside_2sd_k, aes(l, k, color = as.factor(conc_num))) + + ggplot(x_outside_2sd_k, aes(l, K, color = as.factor(conc_num))) + geom_point(aes(ORF = ORF, Gene = Gene, delta_bg = delta_bg), shape = 3) + ggtitle("Raw L vs K for strains falling outside 2sd of the K mean at each conc") + theme_publication_legend_right() pdf(file.path(out_dir_qc, "raw_l_vs_k_for_strains_2sd_outside_mean_k.pdf"), width = 10, height = 8) - print(outside_2sd_k_l_vs_k) + # print(outside_2sd_k_l_vs_k) - dev.off() + invisible(dev.off()) pgg <- ggplotly(outside_2sd_k_l_vs_k) plotly_path <- file.path(out_dir_qc, "raw_l_vs_k_for_strains_outside_2sd_k.html") saveWidget(pgg, file = plotly_path, selfcontained = TRUE) outside_2sd_k_delta_background_vs_k <- - ggplot(x_outside_2sd_k, aes(delta_bg, k, color = as.factor(conc_num))) + + ggplot(x_outside_2sd_k, aes(delta_bg, K, color = as.factor(conc_num))) + geom_point(aes(l = l, ORF = ORF, Gene = Gene), shape = 3, position = "jitter") + ggtitle("DeltaBackground vs K for strains falling outside 2sd of the K mean at each conc") + theme_publication_legend_right() pdf(file.path(out_dir_qc, "delta_background_vs_k_for_strains_2sd_outside_mean_k.pdf"), width = 10, height = 8) outside_2sd_k_delta_background_vs_k - dev.off() + invisible(dev.off()) pgg <- ggplotly(outside_2sd_k_delta_background_vs_k) # pgg @@ -1017,9 +1007,9 @@ for (s in background_strains) { try(df2_temp[df2_temp$l == 0 & !is.na(df2_temp$l), ]$l <- x_stats_by_l_within_2sd_k$max[i]) try(df2_temp[df2_temp$l >= x_stats_by_l_within_2sd_k$max[i] & !is.na(df2_temp$l), ]$SM <- 1) try(df2_temp[df2_temp$l >= x_stats_by_l_within_2sd_k$max[i] & !is.na(df2_temp$l), ]$l <- x_stats_by_l_within_2sd_k$max[i]) - # df2_temp[df2_temp$k == 0, ]$k <- x_stats_all_k$max[i] + # df2_temp[df2_temp$K == 0, ]$K <- x_stats_all_k$max[i] # df2_temp[df2_temp$r == 0, ]$r <- x_stats_all_r$max[i] - # df2_temp[df2_temp$auc == 0, ]$auc <- x_stats_all_auc$max[i] + # df2_temp[df2_temp$AUC == 0, ]$AUC <- x_stats_all_auc$max[i] sprintf("Check loop order, conc = %f", concentration) df2_new <- rbind(df2_new, df2_temp) } @@ -1063,33 +1053,33 @@ for (s in background_strains) { interaction_scores_rf <- unique(df2_rf["OrfRep"]) # interaction_scores_rf$Gene <- unique(df2$Gene) interaction_scores_rf$Gene <- NA - interaction_scores_rf$Raw_Shift_l <- NA + interaction_scores_rf$raw_shift_l <- NA interaction_scores_rf$z_shift_l <- NA - interaction_scores_rf$lm_Score_l <- NA + interaction_scores_rf$lm_score_l <- NA interaction_scores_rf$z_lm_l <- NA - interaction_scores_rf$R_Squared_l <- NA - interaction_scores_rf$Sum_z_Score_l <- NA + interaction_scores_rf$r_squared_l <- NA + interaction_scores_rf$sum_z_score_l <- NA interaction_scores_rf$avg_zscore_l <- NA - interaction_scores_rf$Raw_Shift_k <- NA + interaction_scores_rf$raw_shift_k <- NA interaction_scores_rf$z_shift_k <- NA - interaction_scores_rf$lm_Score_k <- NA + interaction_scores_rf$lm_score_k <- NA interaction_scores_rf$z_lm_k <- NA - interaction_scores_rf$R_Squared_k <- NA - interaction_scores_rf$Sum_z_Score_k <- NA + interaction_scores_rf$r_squared_k <- NA + interaction_scores_rf$sum_z_score_k <- NA interaction_scores_rf$avg_zscore_k <- NA - interaction_scores_rf$Raw_Shift_r <- NA + interaction_scores_rf$raw_shift_r <- NA interaction_scores_rf$z_shift_r <- NA - interaction_scores_rf$lm_Score_r <- NA + interaction_scores_rf$lm_score_r <- NA interaction_scores_rf$z_lm_r <- NA - interaction_scores_rf$R_Squared_r <- NA - interaction_scores_rf$Sum_z_Score_r <- NA + interaction_scores_rf$r_squared_r <- NA + interaction_scores_rf$sum_z_score_r <- NA interaction_scores_rf$avg_zscore_r <- NA - interaction_scores_rf$Raw_Shift_auc <- NA + interaction_scores_rf$raw_shift_auc <- NA interaction_scores_rf$z_shift_auc <- NA - interaction_scores_rf$lm_Score_auc <- NA + interaction_scores_rf$lm_score_auc <- NA interaction_scores_rf$z_lm_auc <- NA - interaction_scores_rf$R_Squared_auc <- NA - interaction_scores_rf$Sum_z_Score_auc <- NA + interaction_scores_rf$r_squared_auc <- NA + interaction_scores_rf$sum_z_score_auc <- NA interaction_scores_rf$avg_zscore_auc <- NA interaction_scores_rf$NG <- NA interaction_scores_rf$SM <- NA @@ -1109,17 +1099,17 @@ for (s in background_strains) { median_l = median(l, na.rm = TRUE), sd_l = sd(l, na.rm = TRUE), se_l = sd_l / sqrt(N - 1), - mean_k = mean(k, na.rm = TRUE), - median_k = median(k, na.rm = TRUE), - sd_k = sd(k, na.rm = TRUE), + mean_k = mean(K, na.rm = TRUE), + median_k = median(K, na.rm = TRUE), + sd_k = sd(K, na.rm = TRUE), se_k = sd_k / sqrt(N - 1), mean_r = mean(r, na.rm = TRUE), median_r = median(r, na.rm = TRUE), sd_r = sd(r, na.rm = TRUE), se_r = sd_r / sqrt(N - 1), - mean_auc = mean(auc, na.rm = TRUE), - median_auc = median(auc, na.rm = TRUE), - sd_auc = sd(auc, na.rm = TRUE), + mean_auc = mean(AUC, na.rm = TRUE), + median_auc = median(AUC, na.rm = TRUE), + sd_auc = sd(AUC, na.rm = TRUE), se_auc = sd_auc / sqrt(N - 1), NG = sum(NG, na.rm = TRUE), DB = sum(DB, na.rm = TRUE), @@ -1132,23 +1122,23 @@ for (s in background_strains) { # if L is 0, keep the shift at 0 and for other drug concs calculate delta Ls with no shift # otherwise calculate shift at no drug conc if (is.na(x_stats_interaction$mean_l[1]) || x_stats_interaction$mean_l[1] == 0) { - x_stats_interaction$Raw_Shift_l <- 0 - x_stats_interaction$Raw_Shift_k <- 0 - x_stats_interaction$Raw_Shift_r <- 0 - x_stats_interaction$Raw_Shift_auc <- 0 + x_stats_interaction$raw_shift_l <- 0 + x_stats_interaction$raw_shift_k <- 0 + x_stats_interaction$raw_shift_r <- 0 + x_stats_interaction$raw_shift_auc <- 0 x_stats_interaction$z_shift_l <- 0 x_stats_interaction$z_shift_k <- 0 x_stats_interaction$z_shift_r <- 0 x_stats_interaction$z_shift_auc <- 0 } else { - x_stats_interaction$Raw_Shift_l <- x_stats_interaction$mean_l[1] - background_l - x_stats_interaction$Raw_Shift_k <- x_stats_interaction$mean_k[1] - background_k - x_stats_interaction$Raw_Shift_r <- x_stats_interaction$mean_r[1] - background_r - x_stats_interaction$Raw_Shift_auc <- x_stats_interaction$mean_auc[1] - background_auc - x_stats_interaction$z_shift_l <- x_stats_interaction$Raw_Shift_l[1] / x_stats_by_l$sd[1] - x_stats_interaction$z_shift_k <- x_stats_interaction$Raw_Shift_k[1] / x_stats_by_k$sd[1] - x_stats_interaction$z_shift_r <- x_stats_interaction$Raw_Shift_r[1] / x_stats_by_r$sd[1] - x_stats_interaction$z_shift_auc <- x_stats_interaction$Raw_Shift_auc[1] / x_stats_by_auc$sd[1] + x_stats_interaction$raw_shift_l <- x_stats_interaction$mean_l[1] - background_l + x_stats_interaction$raw_shift_k <- x_stats_interaction$mean_k[1] - background_k + x_stats_interaction$raw_shift_r <- x_stats_interaction$mean_r[1] - background_r + x_stats_interaction$raw_shift_auc <- x_stats_interaction$mean_auc[1] - background_auc + x_stats_interaction$z_shift_l <- x_stats_interaction$raw_shift_l[1] / x_stats_by_l$sd[1] + x_stats_interaction$z_shift_k <- x_stats_interaction$raw_shift_k[1] / x_stats_by_k$sd[1] + x_stats_interaction$z_shift_r <- x_stats_interaction$raw_shift_r[1] / x_stats_by_r$sd[1] + x_stats_interaction$z_shift_auc <- x_stats_interaction$raw_shift_auc[1] / x_stats_by_auc$sd[1] } # Get WT vals @@ -1167,10 +1157,10 @@ for (s in background_strains) { if (x_stats_interaction$mean_l[1] != 0 && !is.na(x_stats_interaction$mean_l[1])) { # Calculate expected values - x_stats_interaction$Exp_l <- x_stats_interaction$WT_l + x_stats_interaction$Raw_Shift_l - x_stats_interaction$Exp_k <- x_stats_interaction$WT_k + x_stats_interaction$Raw_Shift_k - x_stats_interaction$Exp_r <- x_stats_interaction$WT_r + x_stats_interaction$Raw_Shift_r - x_stats_interaction$Exp_auc <- x_stats_interaction$WT_auc + x_stats_interaction$Raw_Shift_auc + x_stats_interaction$Exp_l <- x_stats_interaction$WT_l + x_stats_interaction$raw_shift_l + x_stats_interaction$Exp_k <- x_stats_interaction$WT_k + x_stats_interaction$raw_shift_k + x_stats_interaction$Exp_r <- x_stats_interaction$WT_r + x_stats_interaction$raw_shift_r + x_stats_interaction$Exp_auc <- x_stats_interaction$WT_auc + x_stats_interaction$raw_shift_auc # Calculate normalized delta values x_stats_interaction$delta_l <- x_stats_interaction$mean_l - x_stats_interaction$Exp_l @@ -1233,51 +1223,51 @@ for (s in background_strains) { x_gene_sel$OrfRep[1] interaction_scores_rf$Gene[interaction_scores_rf$OrfRep == gene_sel] <- x_gene_sel$Gene[1] - interaction_scores_rf$Raw_Shift_l[interaction_scores_rf$OrfRep == gene_sel] <- - x_stats_interaction$Raw_Shift_l[1] + interaction_scores_rf$raw_shift_l[interaction_scores_rf$OrfRep == gene_sel] <- + x_stats_interaction$raw_shift_l[1] interaction_scores_rf$z_shift_l[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$z_shift_l[1] - interaction_scores_rf$lm_Score_l[interaction_scores_rf$OrfRep == gene_sel] <- + interaction_scores_rf$lm_score_l[interaction_scores_rf$OrfRep == gene_sel] <- gene_interaction_l - interaction_scores_rf$R_Squared_l[interaction_scores_rf$OrfRep == gene_sel] <- + interaction_scores_rf$r_squared_l[interaction_scores_rf$OrfRep == gene_sel] <- r_squared_l - interaction_scores_rf$Sum_z_Score_l[interaction_scores_rf$OrfRep == gene_sel] <- + interaction_scores_rf$sum_z_score_l[interaction_scores_rf$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_l, na.rm = TRUE) interaction_scores_rf$avg_zscore_l[interaction_scores_rf$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_l, na.rm = TRUE) / (num_non_removed_conc) - interaction_scores_rf$Raw_Shift_k[interaction_scores_rf$OrfRep == gene_sel] <- - x_stats_interaction$Raw_Shift_k[1] + interaction_scores_rf$raw_shift_k[interaction_scores_rf$OrfRep == gene_sel] <- + x_stats_interaction$raw_shift_k[1] interaction_scores_rf$z_shift_k[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$z_shift_k[1] - interaction_scores_rf$lm_Score_k[interaction_scores_rf$OrfRep == gene_sel] <- + interaction_scores_rf$lm_score_k[interaction_scores_rf$OrfRep == gene_sel] <- gene_interaction_k - interaction_scores_rf$R_Squared_k[interaction_scores_rf$OrfRep == gene_sel] <- + interaction_scores_rf$r_squared_k[interaction_scores_rf$OrfRep == gene_sel] <- r_squared_k - interaction_scores_rf$Sum_z_Score_k[interaction_scores_rf$OrfRep == gene_sel] <- + interaction_scores_rf$sum_z_score_k[interaction_scores_rf$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_k, na.rm = TRUE) interaction_scores_rf$avg_zscore_k[interaction_scores_rf$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_k, na.rm = TRUE) / (num_non_removed_conc) - interaction_scores_rf$Raw_Shift_r[interaction_scores_rf$OrfRep == gene_sel] <- - x_stats_interaction$Raw_Shift_r[1] + interaction_scores_rf$raw_shift_r[interaction_scores_rf$OrfRep == gene_sel] <- + x_stats_interaction$raw_shift_r[1] interaction_scores_rf$z_shift_r[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$z_shift_r[1] - interaction_scores_rf$lm_Score_r[interaction_scores_rf$OrfRep == gene_sel] <- + interaction_scores_rf$lm_score_r[interaction_scores_rf$OrfRep == gene_sel] <- gene_interaction_r - interaction_scores_rf$R_Squared_r[interaction_scores_rf$OrfRep == gene_sel] <- + interaction_scores_rf$r_squared_r[interaction_scores_rf$OrfRep == gene_sel] <- r_squared_r - interaction_scores_rf$Sum_z_Score_r[interaction_scores_rf$OrfRep == gene_sel] <- + interaction_scores_rf$sum_z_score_r[interaction_scores_rf$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_r, na.rm = TRUE) interaction_scores_rf$avg_zscore_r[interaction_scores_rf$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_r, na.rm = TRUE) / (total_conc_nums - 1) - interaction_scores_rf$Raw_Shift_auc[interaction_scores_rf$OrfRep == gene_sel] <- - x_stats_interaction$Raw_Shift_auc[1] + interaction_scores_rf$raw_shift_auc[interaction_scores_rf$OrfRep == gene_sel] <- + x_stats_interaction$raw_shift_auc[1] interaction_scores_rf$z_shift_auc[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$z_shift_auc[1] - interaction_scores_rf$lm_Score_auc[interaction_scores_rf$OrfRep == gene_sel] <- + interaction_scores_rf$lm_score_auc[interaction_scores_rf$OrfRep == gene_sel] <- gene_interaction_auc - interaction_scores_rf$R_Squared_auc[interaction_scores_rf$OrfRep == gene_sel] <- + interaction_scores_rf$r_squared_auc[interaction_scores_rf$OrfRep == gene_sel] <- r_squared_auc - interaction_scores_rf$Sum_z_Score_auc[interaction_scores_rf$OrfRep == gene_sel] <- + interaction_scores_rf$sum_z_score_auc[interaction_scores_rf$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_auc, na.rm = TRUE) interaction_scores_rf$avg_zscore_auc[interaction_scores_rf$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_auc, na.rm = TRUE) / (total_conc_nums - 1) @@ -1286,10 +1276,10 @@ for (s in background_strains) { if (x_stats_interaction$mean_l[1] == 0 || is.na(x_stats_interaction$mean_l[1])) { # Calculate expected values - x_stats_interaction$Exp_l <- x_stats_interaction$WT_l + x_stats_interaction$Raw_Shift_l - x_stats_interaction$Exp_k <- x_stats_interaction$WT_k + x_stats_interaction$Raw_Shift_k - x_stats_interaction$Exp_r <- x_stats_interaction$WT_r + x_stats_interaction$Raw_Shift_r - x_stats_interaction$Exp_auc <- x_stats_interaction$WT_auc + x_stats_interaction$Raw_Shift_auc + x_stats_interaction$Exp_l <- x_stats_interaction$WT_l + x_stats_interaction$raw_shift_l + x_stats_interaction$Exp_k <- x_stats_interaction$WT_k + x_stats_interaction$raw_shift_k + x_stats_interaction$Exp_r <- x_stats_interaction$WT_r + x_stats_interaction$raw_shift_r + x_stats_interaction$Exp_auc <- x_stats_interaction$WT_auc + x_stats_interaction$raw_shift_auc # Calculate normalized delta values x_stats_interaction$delta_l <- x_stats_interaction$mean_l - x_stats_interaction$Exp_l @@ -1341,39 +1331,39 @@ for (s in background_strains) { r_squared_r <- NA gene_interaction_auc <- NA r_squared_auc <- NA - x_stats_interaction$Raw_Shift_l <- NA - x_stats_interaction$Raw_Shift_k <- NA - x_stats_interaction$Raw_Shift_r <- NA - x_stats_interaction$Raw_Shift_auc <- NA + x_stats_interaction$raw_shift_l <- NA + x_stats_interaction$raw_shift_k <- NA + x_stats_interaction$raw_shift_r <- NA + x_stats_interaction$raw_shift_auc <- NA x_stats_interaction$z_shift_l <- NA x_stats_interaction$z_shift_k <- NA x_stats_interaction$z_shift_r <- NA x_stats_interaction$z_shift_auc <- NA interaction_scores_rf$OrfRep[interaction_scores_rf$OrfRep == gene_sel] <- x_gene_sel$OrfRep[1] interaction_scores_rf$Gene[interaction_scores_rf$OrfRep == gene_sel] <- x_gene_sel$Gene[1] - interaction_scores_rf$Raw_Shift_l[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$Raw_Shift_l[1] + interaction_scores_rf$raw_shift_l[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$raw_shift_l[1] interaction_scores_rf$z_shift_l[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$z_shift_l[1] - interaction_scores_rf$lm_Score_l[interaction_scores_rf$OrfRep == gene_sel] <- gene_interaction_l - interaction_scores_rf$R_Squared_l[interaction_scores_rf$OrfRep == gene_sel] <- r_squared_l - interaction_scores_rf$Sum_z_Score_l[interaction_scores_rf$OrfRep == gene_sel] <- NA + interaction_scores_rf$lm_score_l[interaction_scores_rf$OrfRep == gene_sel] <- gene_interaction_l + interaction_scores_rf$r_squared_l[interaction_scores_rf$OrfRep == gene_sel] <- r_squared_l + interaction_scores_rf$sum_z_score_l[interaction_scores_rf$OrfRep == gene_sel] <- NA interaction_scores_rf$avg_zscore_l[interaction_scores_rf$OrfRep == gene_sel] <- NA - interaction_scores_rf$Raw_Shift_k[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$Raw_Shift_k[1] + interaction_scores_rf$raw_shift_k[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$raw_shift_k[1] interaction_scores_rf$z_shift_k[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$z_shift_k[1] - interaction_scores_rf$lm_Score_k[interaction_scores_rf$OrfRep == gene_sel] <- gene_interaction_k - interaction_scores_rf$R_Squared_k[interaction_scores_rf$OrfRep == gene_sel] <- r_squared_k - interaction_scores_rf$Sum_z_Score_k[interaction_scores_rf$OrfRep == gene_sel] <- NA + interaction_scores_rf$lm_score_k[interaction_scores_rf$OrfRep == gene_sel] <- gene_interaction_k + interaction_scores_rf$r_squared_k[interaction_scores_rf$OrfRep == gene_sel] <- r_squared_k + interaction_scores_rf$sum_z_score_k[interaction_scores_rf$OrfRep == gene_sel] <- NA interaction_scores_rf$avg_zscore_k[interaction_scores_rf$OrfRep == gene_sel] <- NA - interaction_scores_rf$Raw_Shift_r[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$Raw_Shift_r[1] + interaction_scores_rf$raw_shift_r[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$raw_shift_r[1] interaction_scores_rf$z_shift_r[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$z_shift_r[1] - interaction_scores_rf$lm_Score_r[interaction_scores_rf$OrfRep == gene_sel] <- gene_interaction_r - interaction_scores_rf$R_Squared_r[interaction_scores_rf$OrfRep == gene_sel] <- r_squared_r - interaction_scores_rf$Sum_z_Score_r[interaction_scores_rf$OrfRep == gene_sel] <- NA + interaction_scores_rf$lm_score_r[interaction_scores_rf$OrfRep == gene_sel] <- gene_interaction_r + interaction_scores_rf$r_squared_r[interaction_scores_rf$OrfRep == gene_sel] <- r_squared_r + interaction_scores_rf$sum_z_score_r[interaction_scores_rf$OrfRep == gene_sel] <- NA interaction_scores_rf$avg_zscore_r[interaction_scores_rf$OrfRep == gene_sel] <- NA - interaction_scores_rf$Raw_Shift_auc[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$Raw_Shift_auc[1] + interaction_scores_rf$raw_shift_auc[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$raw_shift_auc[1] interaction_scores_rf$z_shift_auc[interaction_scores_rf$OrfRep == gene_sel] <- x_stats_interaction$z_shift_auc[1] - interaction_scores_rf$lm_Score_auc[interaction_scores_rf$OrfRep == gene_sel] <- gene_interaction_auc - interaction_scores_rf$R_Squared_auc[interaction_scores_rf$OrfRep == gene_sel] <- r_squared_auc - interaction_scores_rf$Sum_z_Score_auc[interaction_scores_rf$OrfRep == gene_sel] <- NA + interaction_scores_rf$lm_score_auc[interaction_scores_rf$OrfRep == gene_sel] <- gene_interaction_auc + interaction_scores_rf$r_squared_auc[interaction_scores_rf$OrfRep == gene_sel] <- r_squared_auc + interaction_scores_rf$sum_z_score_auc[interaction_scores_rf$OrfRep == gene_sel] <- NA interaction_scores_rf$avg_zscore_auc[interaction_scores_rf$OrfRep == gene_sel] <- NA } @@ -1394,21 +1384,21 @@ for (s in background_strains) { print("Pass RF Calculation loop") - lm_sd_l <- sd(interaction_scores_rf$lm_Score_l, na.rm = TRUE) - lm_sd_k <- sd(interaction_scores_rf$lm_Score_k, na.rm = TRUE) - lm_sd_r <- sd(interaction_scores_rf$lm_Score_r, na.rm = TRUE) - lm_sd_auc <- sd(interaction_scores_rf$lm_Score_auc, na.rm = TRUE) - lm_mean_l <- mean(interaction_scores_rf$lm_Score_l, na.rm = TRUE) - lm_mean_k <- mean(interaction_scores_rf$lm_Score_k, na.rm = TRUE) - lm_mean_r <- mean(interaction_scores_rf$lm_Score_r, na.rm = TRUE) - lm_mean_auc <- mean(interaction_scores_rf$lm_Score_auc, na.rm = TRUE) + lm_sd_l <- sd(interaction_scores_rf$lm_score_l, na.rm = TRUE) + lm_sd_k <- sd(interaction_scores_rf$lm_score_k, na.rm = TRUE) + lm_sd_r <- sd(interaction_scores_rf$lm_score_r, na.rm = TRUE) + lm_sd_auc <- sd(interaction_scores_rf$lm_score_auc, na.rm = TRUE) + lm_mean_l <- mean(interaction_scores_rf$lm_score_l, na.rm = TRUE) + lm_mean_k <- mean(interaction_scores_rf$lm_score_k, na.rm = TRUE) + lm_mean_r <- mean(interaction_scores_rf$lm_score_r, na.rm = TRUE) + lm_mean_auc <- mean(interaction_scores_rf$lm_score_auc, na.rm = TRUE) print(paste("Mean RF linear regression score L", lm_mean_l)) - interaction_scores_rf$z_lm_l <- (interaction_scores_rf$lm_Score_l - lm_mean_l) / (lm_sd_l) - interaction_scores_rf$z_lm_k <- (interaction_scores_rf$lm_Score_k - lm_mean_k) / (lm_sd_k) - interaction_scores_rf$z_lm_r <- (interaction_scores_rf$lm_Score_r - lm_mean_r) / (lm_sd_r) - interaction_scores_rf$z_lm_auc <- (interaction_scores_rf$lm_Score_auc - lm_mean_auc) / (lm_sd_auc) + interaction_scores_rf$z_lm_l <- (interaction_scores_rf$lm_score_l - lm_mean_l) / (lm_sd_l) + interaction_scores_rf$z_lm_k <- (interaction_scores_rf$lm_score_k - lm_mean_k) / (lm_sd_k) + interaction_scores_rf$z_lm_r <- (interaction_scores_rf$lm_score_r - lm_mean_r) / (lm_sd_r) + interaction_scores_rf$z_lm_auc <- (interaction_scores_rf$lm_score_auc - lm_mean_auc) / (lm_sd_auc) interaction_scores_rf <- interaction_scores_rf[order(interaction_scores_rf$z_lm_l, decreasing = TRUE), ] interaction_scores_rf <- interaction_scores_rf[order(interaction_scores_rf$NG, decreasing = TRUE), ] write.csv(interaction_scores_rf, file.path(out_dir, "rf_zscores_interaction.csv"), row.names = FALSE) @@ -1525,33 +1515,33 @@ for (s in background_strains) { interaction_scores <- unique(df2["OrfRep"]) # interaction_scores$Gene <- unique(df2$Gene) interaction_scores$Gene <- NA - interaction_scores$Raw_Shift_l <- NA + interaction_scores$raw_shift_l <- NA interaction_scores$z_shift_l <- NA - interaction_scores$lm_Score_l <- NA + interaction_scores$lm_score_l <- NA interaction_scores$z_lm_l <- NA - interaction_scores$R_Squared_l <- NA - interaction_scores$Sum_z_Score_l <- NA + interaction_scores$r_squared_l <- NA + interaction_scores$sum_z_score_l <- NA interaction_scores$avg_zscore_l <- NA - interaction_scores$Raw_Shift_k <- NA + interaction_scores$raw_shift_k <- NA interaction_scores$z_shift_k <- NA - interaction_scores$lm_Score_k <- NA + interaction_scores$lm_score_k <- NA interaction_scores$z_lm_k <- NA - interaction_scores$R_Squared_k <- NA - interaction_scores$Sum_z_Score_k <- NA + interaction_scores$r_squared_k <- NA + interaction_scores$sum_z_score_k <- NA interaction_scores$avg_zscore_k <- NA - interaction_scores$Raw_Shift_r <- NA + interaction_scores$raw_shift_r <- NA interaction_scores$z_shift_r <- NA - interaction_scores$lm_Score_r <- NA + interaction_scores$lm_score_r <- NA interaction_scores$z_lm_r <- NA - interaction_scores$R_Squared_r <- NA - interaction_scores$Sum_z_Score_r <- NA + interaction_scores$r_squared_r <- NA + interaction_scores$sum_z_score_r <- NA interaction_scores$avg_zscore_r <- NA - interaction_scores$Raw_Shift_auc <- NA + interaction_scores$raw_shift_auc <- NA interaction_scores$z_shift_auc <- NA - interaction_scores$lm_Score_auc <- NA + interaction_scores$lm_score_auc <- NA interaction_scores$z_lm_auc <- NA - interaction_scores$R_Squared_auc <- NA - interaction_scores$Sum_z_Score_auc <- NA + interaction_scores$r_squared_auc <- NA + interaction_scores$sum_z_score_auc <- NA interaction_scores$avg_zscore_auc <- NA interaction_scores$NG <- NA interaction_scores$DB <- NA @@ -1572,17 +1562,17 @@ for (s in background_strains) { median_l = median(l, na.rm = TRUE), sd_l = sd(l, na.rm = TRUE), se_l = sd_l / sqrt(N - 1), - mean_k = mean(k, na.rm = TRUE), - median_k = median(k, na.rm = TRUE), - sd_k = sd(k, na.rm = TRUE), + mean_k = mean(K, na.rm = TRUE), + median_k = median(K, na.rm = TRUE), + sd_k = sd(K, na.rm = TRUE), se_k = sd_k / sqrt(N - 1), mean_r = mean(r, na.rm = TRUE), median_r = median(r, na.rm = TRUE), sd_r = sd(r, na.rm = TRUE), se_r = sd_r / sqrt(N - 1), - mean_auc = mean(auc, na.rm = TRUE), - median_auc = median(auc, na.rm = TRUE), - sd_auc = sd(auc, na.rm = TRUE), + mean_auc = mean(AUC, na.rm = TRUE), + median_auc = median(AUC, na.rm = TRUE), + sd_auc = sd(AUC, na.rm = TRUE), se_auc = sd_auc / sqrt(N - 1), NG = sum(NG, na.rm = TRUE), DB = sum(DB, na.rm = TRUE), @@ -1595,23 +1585,23 @@ for (s in background_strains) { # if L is 0, keep the shift at 0 and for other drug concs calculate delta Ls with no shift # otherwise calculate shift at no drug conc if (is.na(x_stats_interaction$mean_l[1]) || x_stats_interaction$mean_l[1] == 0) { - x_stats_interaction$Raw_Shift_l <- 0 - x_stats_interaction$Raw_Shift_k <- 0 - x_stats_interaction$Raw_Shift_r <- 0 - x_stats_interaction$Raw_Shift_auc <- 0 + x_stats_interaction$raw_shift_l <- 0 + x_stats_interaction$raw_shift_k <- 0 + x_stats_interaction$raw_shift_r <- 0 + x_stats_interaction$raw_shift_auc <- 0 x_stats_interaction$z_shift_l <- 0 x_stats_interaction$z_shift_k <- 0 x_stats_interaction$z_shift_r <- 0 x_stats_interaction$z_shift_auc <- 0 } else { - x_stats_interaction$Raw_Shift_l <- x_stats_interaction$mean_l[1] - background_l - x_stats_interaction$Raw_Shift_k <- x_stats_interaction$mean_k[1] - background_k - x_stats_interaction$Raw_Shift_r <- x_stats_interaction$mean_r[1] - background_r - x_stats_interaction$Raw_Shift_auc <- x_stats_interaction$mean_auc[1] - background_auc - x_stats_interaction$z_shift_l <- x_stats_interaction$Raw_Shift_l[1] / x_stats_by_l$sd[1] - x_stats_interaction$z_shift_k <- x_stats_interaction$Raw_Shift_k[1] / x_stats_by_k$sd[1] - x_stats_interaction$z_shift_r <- x_stats_interaction$Raw_Shift_r[1] / x_stats_by_r$sd[1] - x_stats_interaction$z_shift_auc <- x_stats_interaction$Raw_Shift_auc[1] / x_stats_by_auc$sd[1] + x_stats_interaction$raw_shift_l <- x_stats_interaction$mean_l[1] - background_l + x_stats_interaction$raw_shift_k <- x_stats_interaction$mean_k[1] - background_k + x_stats_interaction$raw_shift_r <- x_stats_interaction$mean_r[1] - background_r + x_stats_interaction$raw_shift_auc <- x_stats_interaction$mean_auc[1] - background_auc + x_stats_interaction$z_shift_l <- x_stats_interaction$raw_shift_l[1] / x_stats_by_l$sd[1] + x_stats_interaction$z_shift_k <- x_stats_interaction$raw_shift_k[1] / x_stats_by_k$sd[1] + x_stats_interaction$z_shift_r <- x_stats_interaction$raw_shift_r[1] / x_stats_by_r$sd[1] + x_stats_interaction$z_shift_auc <- x_stats_interaction$raw_shift_auc[1] / x_stats_by_auc$sd[1] } # Get WT vals @@ -1630,10 +1620,10 @@ for (s in background_strains) { if (x_stats_interaction$mean_l[1] != 0 && !is.na(x_stats_interaction$mean_l[1])) { # Calculate expected values - x_stats_interaction$Exp_l <- x_stats_interaction$WT_l + x_stats_interaction$Raw_Shift_l - x_stats_interaction$Exp_k <- x_stats_interaction$WT_k + x_stats_interaction$Raw_Shift_k - x_stats_interaction$Exp_r <- x_stats_interaction$WT_r + x_stats_interaction$Raw_Shift_r - x_stats_interaction$Exp_auc <- x_stats_interaction$WT_auc + x_stats_interaction$Raw_Shift_auc + x_stats_interaction$Exp_l <- x_stats_interaction$WT_l + x_stats_interaction$raw_shift_l + x_stats_interaction$Exp_k <- x_stats_interaction$WT_k + x_stats_interaction$raw_shift_k + x_stats_interaction$Exp_r <- x_stats_interaction$WT_r + x_stats_interaction$raw_shift_r + x_stats_interaction$Exp_auc <- x_stats_interaction$WT_auc + x_stats_interaction$raw_shift_auc # Calculate normalized delta values x_stats_interaction$delta_l <- x_stats_interaction$mean_l - x_stats_interaction$Exp_l @@ -1696,59 +1686,59 @@ for (s in background_strains) { as.character(x_gene_sel$OrfRep[1]) interaction_scores$Gene[interaction_scores$OrfRep == gene_sel] <- as.character(x_gene_sel$Gene[1]) - interaction_scores$Raw_Shift_l[interaction_scores$OrfRep == gene_sel] <- - x_stats_interaction$Raw_Shift_l[1] + interaction_scores$raw_shift_l[interaction_scores$OrfRep == gene_sel] <- + x_stats_interaction$raw_shift_l[1] interaction_scores$z_shift_l[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$z_shift_l[1] - interaction_scores$lm_Score_l[interaction_scores$OrfRep == gene_sel] <- + interaction_scores$lm_score_l[interaction_scores$OrfRep == gene_sel] <- gene_interaction_l interaction_scores$z_lm_l[interaction_scores$OrfRep == gene_sel] <- (gene_interaction_l - lm_mean_l) / lm_sd_l - interaction_scores$R_Squared_l[interaction_scores$OrfRep == gene_sel] <- + interaction_scores$r_squared_l[interaction_scores$OrfRep == gene_sel] <- r_squared_l - interaction_scores$Sum_z_Score_l[interaction_scores$OrfRep == gene_sel] <- + interaction_scores$sum_z_score_l[interaction_scores$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_l, na.rm = TRUE) interaction_scores$avg_zscore_l[interaction_scores$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_l, na.rm = TRUE) / (num_non_removed_conc) - interaction_scores$Raw_Shift_k[interaction_scores$OrfRep == gene_sel] <- - x_stats_interaction$Raw_Shift_k[1] + interaction_scores$raw_shift_k[interaction_scores$OrfRep == gene_sel] <- + x_stats_interaction$raw_shift_k[1] interaction_scores$z_shift_k[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$z_shift_k[1] - interaction_scores$lm_Score_k[interaction_scores$OrfRep == gene_sel] <- + interaction_scores$lm_score_k[interaction_scores$OrfRep == gene_sel] <- gene_interaction_k interaction_scores$z_lm_k[interaction_scores$OrfRep == gene_sel] <- (gene_interaction_k - lm_mean_k) / lm_sd_k - interaction_scores$R_Squared_k[interaction_scores$OrfRep == gene_sel] <- + interaction_scores$r_squared_k[interaction_scores$OrfRep == gene_sel] <- r_squared_k - interaction_scores$Sum_z_Score_k[interaction_scores$OrfRep == gene_sel] <- + interaction_scores$sum_z_score_k[interaction_scores$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_k, na.rm = TRUE) interaction_scores$avg_zscore_k[interaction_scores$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_k, na.rm = TRUE) / (num_non_removed_conc) - interaction_scores$Raw_Shift_r[interaction_scores$OrfRep == gene_sel] <- - x_stats_interaction$Raw_Shift_r[1] + interaction_scores$raw_shift_r[interaction_scores$OrfRep == gene_sel] <- + x_stats_interaction$raw_shift_r[1] interaction_scores$z_shift_r[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$z_shift_r[1] - interaction_scores$lm_Score_r[interaction_scores$OrfRep == gene_sel] <- + interaction_scores$lm_score_r[interaction_scores$OrfRep == gene_sel] <- gene_interaction_r interaction_scores$z_lm_r[interaction_scores$OrfRep == gene_sel] <- (gene_interaction_r - lm_mean_r) / lm_sd_r - interaction_scores$R_Squared_r[interaction_scores$OrfRep == gene_sel] <- + interaction_scores$r_squared_r[interaction_scores$OrfRep == gene_sel] <- r_squared_r - interaction_scores$Sum_z_Score_r[interaction_scores$OrfRep == gene_sel] <- + interaction_scores$sum_z_score_r[interaction_scores$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_r, na.rm = TRUE) interaction_scores$avg_zscore_r[interaction_scores$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_r, na.rm = TRUE) / (total_conc_nums - 1) - interaction_scores$Raw_Shift_auc[interaction_scores$OrfRep == gene_sel] <- - x_stats_interaction$Raw_Shift_auc[1] + interaction_scores$raw_shift_auc[interaction_scores$OrfRep == gene_sel] <- + x_stats_interaction$raw_shift_auc[1] interaction_scores$z_shift_auc[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$z_shift_auc[1] - interaction_scores$lm_Score_auc[interaction_scores$OrfRep == gene_sel] <- + interaction_scores$lm_score_auc[interaction_scores$OrfRep == gene_sel] <- gene_interaction_auc interaction_scores$z_lm_auc[interaction_scores$OrfRep == gene_sel] <- (gene_interaction_auc - lm_mean_auc) / lm_sd_auc - interaction_scores$R_Squared_auc[interaction_scores$OrfRep == gene_sel] <- + interaction_scores$r_squared_auc[interaction_scores$OrfRep == gene_sel] <- r_squared_auc - interaction_scores$Sum_z_Score_auc[interaction_scores$OrfRep == gene_sel] <- + interaction_scores$sum_z_score_auc[interaction_scores$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_auc, na.rm = TRUE) interaction_scores$avg_zscore_auc[interaction_scores$OrfRep == gene_sel] <- sum(x_stats_interaction$zscore_auc, na.rm = TRUE) / (total_conc_nums - 1) @@ -1757,10 +1747,10 @@ for (s in background_strains) { if (x_stats_interaction$mean_l[1] == 0 || is.na(x_stats_interaction$mean_l[1])) { # Calculate expected values - x_stats_interaction$Exp_l <- x_stats_interaction$WT_l + x_stats_interaction$Raw_Shift_l - x_stats_interaction$Exp_k <- x_stats_interaction$WT_k + x_stats_interaction$Raw_Shift_k - x_stats_interaction$Exp_r <- x_stats_interaction$WT_r + x_stats_interaction$Raw_Shift_r - x_stats_interaction$Exp_auc <- x_stats_interaction$WT_auc + x_stats_interaction$Raw_Shift_auc + x_stats_interaction$Exp_l <- x_stats_interaction$WT_l + x_stats_interaction$raw_shift_l + x_stats_interaction$Exp_k <- x_stats_interaction$WT_k + x_stats_interaction$raw_shift_k + x_stats_interaction$Exp_r <- x_stats_interaction$WT_r + x_stats_interaction$raw_shift_r + x_stats_interaction$Exp_auc <- x_stats_interaction$WT_auc + x_stats_interaction$raw_shift_auc # Calculate normalized delta values x_stats_interaction$delta_l <- x_stats_interaction$mean_l - x_stats_interaction$Exp_l @@ -1810,43 +1800,43 @@ for (s in background_strains) { r_squared_k <- NA gene_interaction_r <- NA r_squared_r <- NA - x_stats_interaction$Raw_Shift_l <- NA - x_stats_interaction$Raw_Shift_k <- NA - x_stats_interaction$Raw_Shift_r <- NA - x_stats_interaction$Raw_Shift_auc <- NA + x_stats_interaction$raw_shift_l <- NA + x_stats_interaction$raw_shift_k <- NA + x_stats_interaction$raw_shift_r <- NA + x_stats_interaction$raw_shift_auc <- NA x_stats_interaction$z_shift_l <- NA x_stats_interaction$z_shift_k <- NA x_stats_interaction$z_shift_r <- NA x_stats_interaction$z_shift_auc <- NA interaction_scores$OrfRep[interaction_scores$OrfRep == gene_sel] <- as.character(x_gene_sel$OrfRep[1]) interaction_scores$Gene[interaction_scores$OrfRep == gene_sel] <- as.character(x_gene_sel$Gene[1]) - interaction_scores$Raw_Shift_l[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$Raw_Shift_l[1] + interaction_scores$raw_shift_l[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$raw_shift_l[1] interaction_scores$z_shift_l[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$z_shift_l[1] - interaction_scores$lm_Score_l[interaction_scores$OrfRep == gene_sel] <- NA + interaction_scores$lm_score_l[interaction_scores$OrfRep == gene_sel] <- NA interaction_scores$z_lm_l[interaction_scores$OrfRep == gene_sel] <- NA - interaction_scores$R_Squared_l[interaction_scores$OrfRep == gene_sel] <- r_squared_l - interaction_scores$Sum_z_Score_l[interaction_scores$OrfRep == gene_sel] <- NA + interaction_scores$r_squared_l[interaction_scores$OrfRep == gene_sel] <- r_squared_l + interaction_scores$sum_z_score_l[interaction_scores$OrfRep == gene_sel] <- NA interaction_scores$avg_zscore_l[interaction_scores$OrfRep == gene_sel] <- NA - interaction_scores$Raw_Shift_k[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$Raw_Shift_k[1] + interaction_scores$raw_shift_k[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$raw_shift_k[1] interaction_scores$z_shift_k[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$z_shift_k[1] - interaction_scores$lm_Score_k[interaction_scores$OrfRep == gene_sel] <- NA + interaction_scores$lm_score_k[interaction_scores$OrfRep == gene_sel] <- NA interaction_scores$z_lm_k[interaction_scores$OrfRep == gene_sel] <- NA - interaction_scores$R_Squared_k[interaction_scores$OrfRep == gene_sel] <- r_squared_k - interaction_scores$Sum_z_Score_k[interaction_scores$OrfRep == gene_sel] <- NA + interaction_scores$r_squared_k[interaction_scores$OrfRep == gene_sel] <- r_squared_k + interaction_scores$sum_z_score_k[interaction_scores$OrfRep == gene_sel] <- NA interaction_scores$avg_zscore_k[interaction_scores$OrfRep == gene_sel] <- NA - interaction_scores$Raw_Shift_r[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$Raw_Shift_r[1] + interaction_scores$raw_shift_r[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$raw_shift_r[1] interaction_scores$z_shift_r[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$z_shift_r[1] - interaction_scores$lm_Score_r[interaction_scores$OrfRep == gene_sel] <- NA + interaction_scores$lm_score_r[interaction_scores$OrfRep == gene_sel] <- NA interaction_scores$z_lm_r[interaction_scores$OrfRep == gene_sel] <- NA - interaction_scores$R_Squared_r[interaction_scores$OrfRep == gene_sel] <- r_squared_r - interaction_scores$Sum_z_Score_r[interaction_scores$OrfRep == gene_sel] <- NA + interaction_scores$r_squared_r[interaction_scores$OrfRep == gene_sel] <- r_squared_r + interaction_scores$sum_z_score_r[interaction_scores$OrfRep == gene_sel] <- NA interaction_scores$avg_zscore_r[interaction_scores$OrfRep == gene_sel] <- NA - interaction_scores$Raw_Shift_auc[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$Raw_Shift_auc[1] + interaction_scores$raw_shift_auc[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$raw_shift_auc[1] interaction_scores$z_shift_auc[interaction_scores$OrfRep == gene_sel] <- x_stats_interaction$z_shift_auc[1] - interaction_scores$lm_Score_auc[interaction_scores$OrfRep == gene_sel] <- NA + interaction_scores$lm_score_auc[interaction_scores$OrfRep == gene_sel] <- NA interaction_scores$z_lm_auc[interaction_scores$OrfRep == gene_sel] <- NA - interaction_scores$R_Squared_auc[interaction_scores$OrfRep == gene_sel] <- r_squared_auc - interaction_scores$Sum_z_Score_auc[interaction_scores$OrfRep == gene_sel] <- NA + interaction_scores$r_squared_auc[interaction_scores$OrfRep == gene_sel] <- r_squared_auc + interaction_scores$sum_z_score_auc[interaction_scores$OrfRep == gene_sel] <- NA interaction_scores$avg_zscore_auc[interaction_scores$OrfRep == gene_sel] <- NA } @@ -2093,27 +2083,28 @@ for (s in background_strains) { max_l = max(l, na.rm = TRUE), min_l = min(l, na.rm = TRUE), sd_l = sd(l, na.rm = TRUE), - mean_k = mean(k, na.rm = TRUE), - median_k = median(k, na.rm = TRUE), - max_k = max(k, na.rm = TRUE), - min_k = min(k, na.rm = TRUE), - sd_k = sd(k, na.rm = TRUE), + mean_k = mean(K, na.rm = TRUE), + median_k = median(K, na.rm = TRUE), + max_k = max(K, na.rm = TRUE), + min_k = min(K, na.rm = TRUE), + sd_k = sd(K, na.rm = TRUE), mean_r = mean(r, na.rm = TRUE), median_r = median(r, na.rm = TRUE), max_r = max(r, na.rm = TRUE), min_r = min(r, na.rm = TRUE), sd_r = sd(r, na.rm = TRUE), - mean_auc = mean(auc, na.rm = TRUE), - median_auc = median(auc, na.rm = TRUE), - max_auc = max(auc, na.rm = TRUE), - min_auc = min(auc, na.rm = TRUE), - sd_auc = sd(auc, na.rm = TRUE), + mean_auc = mean(AUC, na.rm = TRUE), + median_auc = median(AUC, na.rm = TRUE), + max_auc = max(AUC, na.rm = TRUE), + min_auc = min(AUC, na.rm = TRUE), + sd_auc = sd(AUC, na.rm = TRUE), NG = sum(NG, na.rm = TRUE), DB = sum(DB, na.rm = TRUE), SM = sum(SM, na.rm = TRUE) ) - l_stats <- ggplot(df2_rf, aes(conc_num_factor, l)) + geom_point(position = "jitter", size = 1) + + l_stats <- ggplot(df2_rf, aes(conc_num_factor, l)) + + geom_point(position = "jitter", size = 1) + stat_summary( fun = mean, fun.min = function(x) mean(x) - sd(x), @@ -2123,9 +2114,9 @@ for (s in background_strains) { scale_x_continuous( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + - ggtitle(paste(s, "Scatter RF for L with SD", sep = " ")) + coord_cartesian(ylim = c(0, 160)) + + labels = as.character(unique(df2_rf$conc_num))) + + ggtitle(paste(s, "Scatter RF for L with SD", sep = " ")) + + coord_cartesian(ylim = c(0, 160)) + annotate("text", x = -0.25, y = 10, label = "NG") + annotate("text", x = -0.25, y = 5, label = "DB") + annotate("text", x = -0.25, y = 0, label = "SM") + @@ -2134,87 +2125,88 @@ for (s in background_strains) { annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = 0, label = x_stats_df2_rf$SM) + theme_publication() - k_stats <- ggplot(df2_rf, aes(conc_num_factor, k)) + geom_point(position = "jitter", size = 1) + + k_stats <- ggplot(df2_rf, aes(conc_num_factor, K)) + + geom_point(position = "jitter", size = 1) + stat_summary( fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), geom = "errorbar", color = "red") + - stat_summary(fun = mean, geom = "point", color = "red") + - scale_x_continuous( - name = unique(df$Drug[1]), - breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + - ggtitle(paste(s, "Scatter RF for K with SD", sep = " ")) + coord_cartesian(ylim = c(-20, 160)) + - annotate("text", x = -0.25, y = -5, label = "NG") + - annotate("text", x = -0.25, y = -12.5, label = "DB") + - annotate("text", x = -0.25, y = -20, label = "SM") + - annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = -5, label = x_stats_df2_rf$NG) + - annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = -12.5, label = x_stats_df2_rf$DB) + - annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = -20, label = x_stats_df2_rf$SM) + - theme_publication() + stat_summary(fun = mean, geom = "point", color = "red") + + scale_x_continuous( + name = unique(df$Drug[1]), + breaks = unique(df2_rf$conc_num_factor), + labels = as.character(unique(df2_rf$conc_num))) + + ggtitle(paste(s, "Scatter RF for K with SD", sep = " ")) + + coord_cartesian(ylim = c(-20, 160)) + + annotate("text", x = -0.25, y = -5, label = "NG") + + annotate("text", x = -0.25, y = -12.5, label = "DB") + + annotate("text", x = -0.25, y = -20, label = "SM") + + annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = -5, label = x_stats_df2_rf$NG) + + annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = -12.5, label = x_stats_df2_rf$DB) + + annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = -20, label = x_stats_df2_rf$SM) + + theme_publication() - r_stats <- ggplot(df2_rf, aes(conc_num_factor, r)) + geom_point(position = "jitter", size = 1) + + r_stats <- ggplot(df2_rf, aes(conc_num_factor, r)) + + geom_point(position = "jitter", size = 1) + stat_summary( fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), geom = "errorbar", color = "red") + - stat_summary(fun = mean, geom = "point", color = "red") + - scale_x_continuous( - name = unique(df$Drug[1]), - breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + - ggtitle(paste(s, "Scatter RF for r with SD", sep = " ")) + coord_cartesian(ylim = c(0, 1)) + - annotate("text", x = -0.25, y = .9, label = "NG") + - annotate("text", x = -0.25, y = .8, label = "DB") + - annotate("text", x = -0.25, y = .7, label = "SM") + - annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = .9, label = x_stats_df2_rf$NG) + - annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = .8, label = x_stats_df2_rf$DB) + - annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = .7, label = x_stats_df2_rf$SM) + - theme_publication() + stat_summary(fun = mean, geom = "point", color = "red") + + scale_x_continuous( + name = unique(df$Drug[1]), + breaks = unique(df2_rf$conc_num_factor), + labels = as.character(unique(df2_rf$conc_num))) + + ggtitle(paste(s, "Scatter RF for r with SD", sep = " ")) + + coord_cartesian(ylim = c(0, 1)) + + annotate("text", x = -0.25, y = .9, label = "NG") + + annotate("text", x = -0.25, y = .8, label = "DB") + + annotate("text", x = -0.25, y = .7, label = "SM") + + annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = .9, label = x_stats_df2_rf$NG) + + annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = .8, label = x_stats_df2_rf$DB) + + annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = .7, label = x_stats_df2_rf$SM) + + theme_publication() - auc_stats <- ggplot(df2_rf, aes(conc_num_factor, auc)) + geom_point(position = "jitter", size = 1) + + auc_stats <- ggplot(df2_rf, aes(conc_num_factor, AUC)) + + geom_point(position = "jitter", size = 1) + stat_summary( fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), geom = "errorbar", color = "red") + - stat_summary(fun = mean, geom = "point", color = "red") + - scale_x_continuous( - name = unique(df$Drug[1]), - breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + - ggtitle(paste(s, "Scatter RF for auc with SD", sep = " ")) + coord_cartesian(ylim = c(0, 12500)) + - annotate("text", x = -0.25, y = 11000, label = "NG") + - annotate("text", x = -0.25, y = 10000, label = "DB") + - annotate("text", x = -0.25, y = 9000, label = "SM") + - annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = 11000, label = x_stats_df2_rf$NG) + - annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = 10000, label = x_stats_df2_rf$DB) + - annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = 9000, label = x_stats_df2_rf$SM) + - theme_publication() + stat_summary(fun = mean, geom = "point", color = "red") + + scale_x_continuous( + name = unique(df$Drug[1]), + breaks = unique(df2_rf$conc_num_factor), + labels = as.character(unique(df2_rf$conc_num))) + + ggtitle(paste(s, "Scatter RF for AUC with SD", sep = " ")) + + coord_cartesian(ylim = c(0, 12500)) + + annotate("text", x = -0.25, y = 11000, label = "NG") + + annotate("text", x = -0.25, y = 10000, label = "DB") + + annotate("text", x = -0.25, y = 9000, label = "SM") + + annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = 11000, label = x_stats_df2_rf$NG) + + annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = 10000, label = x_stats_df2_rf$DB) + + annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = 9000, label = x_stats_df2_rf$SM) + + theme_publication() l_stats_box <- ggplot(df2_rf, aes(as.factor(conc_num_factor), l)) + geom_boxplot() + scale_x_discrete( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + + labels = as.character(unique(df2_rf$conc_num))) + ggtitle(paste(s, "Scatter RF for L with SD", sep = " ")) + coord_cartesian(ylim = c(0, 160)) + theme_publication() - k_stats_box <- ggplot(df2_rf, aes(as.factor(conc_num_factor), k)) + + k_stats_box <- ggplot(df2_rf, aes(as.factor(conc_num_factor), K)) + geom_boxplot() + scale_x_discrete( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + + labels = as.character(unique(df2_rf$conc_num))) + ggtitle(paste(s, "Scatter RF for K with SD", sep = " ")) + coord_cartesian(ylim = c(0, 130)) + theme_publication() @@ -2224,20 +2216,18 @@ for (s in background_strains) { scale_x_discrete( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + + labels = as.character(unique(df2_rf$conc_num))) + ggtitle(paste(s, "Scatter RF for r with SD", sep = " ")) + coord_cartesian(ylim = c(0, 1)) + theme_publication() - auc_stats_box <- ggplot(df2_rf, aes(as.factor(conc_num_factor), auc)) + + auc_stats_box <- ggplot(df2_rf, aes(as.factor(conc_num_factor), AUC)) + geom_boxplot() + scale_x_discrete( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + - ggtitle(paste(s, "Scatter RF for auc with SD", sep = " ")) + + labels = as.character(unique(df2_rf$conc_num))) + + ggtitle(paste(s, "Scatter RF for AUC with SD", sep = " ")) + coord_cartesian(ylim = c(0, 12500)) + theme_publication() @@ -2307,7 +2297,7 @@ for (s in background_strains) { } } - dev.off() + invisible(dev.off()) pdf(file.path(out_dir, "rf_interaction_plots.pdf"), width = 16, height = 16, onefile = TRUE) @@ -2320,21 +2310,21 @@ for (s in background_strains) { max_l = max(l, na.rm = TRUE), min_l = min(l, na.rm = TRUE), sd_l = sd(l, na.rm = TRUE), - mean_k = mean(k, na.rm = TRUE), - median_k = median(k, na.rm = TRUE), - max_k = max(k, na.rm = TRUE), - min_k = min(k, na.rm = TRUE), - sd_k = sd(k, na.rm = TRUE), + mean_k = mean(K, na.rm = TRUE), + median_k = median(K, na.rm = TRUE), + max_k = max(K, na.rm = TRUE), + min_k = min(K, na.rm = TRUE), + sd_k = sd(K, na.rm = TRUE), mean_r = mean(r, na.rm = TRUE), median_r = median(r, na.rm = TRUE), max_r = max(r, na.rm = TRUE), min_r = min(r, na.rm = TRUE), sd_r = sd(r, na.rm = TRUE), - mean_auc = mean(auc, na.rm = TRUE), - median_auc = median(auc, na.rm = TRUE), - max_auc = max(auc, na.rm = TRUE), - min_auc = min(auc, na.rm = TRUE), - sd_auc = sd(auc, na.rm = TRUE), + mean_auc = mean(AUC, na.rm = TRUE), + median_auc = median(AUC, na.rm = TRUE), + max_auc = max(AUC, na.rm = TRUE), + min_auc = min(AUC, na.rm = TRUE), + sd_auc = sd(AUC, na.rm = TRUE), NG = sum(NG, na.rm = TRUE), DB = sum(DB, na.rm = TRUE), SM = sum(SM, na.rm = TRUE) @@ -2346,14 +2336,12 @@ for (s in background_strains) { fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar", color = "red" - ) + + geom = "errorbar", color = "red") + stat_summary(fun = mean, geom = "point", color = "red") + scale_x_continuous( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + + labels = as.character(unique(df2_rf$conc_num))) + ggtitle(paste(s, "Scatter RF for L with SD", sep = " ")) + coord_cartesian(ylim = c(0, 130)) + annotate("text", x = -0.25, y = 10, label = "NG") + @@ -2364,20 +2352,18 @@ for (s in background_strains) { annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = 0, label = x_stats_df2_rf$SM) + theme_publication() - k_stats <- ggplot(df2_rf, aes(conc_num_factor, k)) + + k_stats <- ggplot(df2_rf, aes(conc_num_factor, K)) + geom_point(position = "jitter", size = 1) + stat_summary( fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar", color = "red" - ) + + geom = "errorbar", color = "red") + stat_summary(fun = mean, geom = "point", color = "red") + scale_x_continuous( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + + labels = as.character(unique(df2_rf$conc_num))) + ggtitle(paste(s, "Scatter RF for K with SD", sep = " ")) + coord_cartesian(ylim = c(-20, 160)) + annotate("text", x = -0.25, y = -5, label = "NG") + @@ -2394,14 +2380,12 @@ for (s in background_strains) { fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar", color = "red" - ) + + geom = "errorbar", color = "red") + stat_summary(fun = mean, geom = "point", color = "red") + scale_x_continuous( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + + labels = as.character(unique(df2_rf$conc_num))) + ggtitle(paste(s, "Scatter RF for r with SD", sep = " ")) + coord_cartesian(ylim = c(0, 1)) + annotate("text", x = -0.25, y = .9, label = "NG") + @@ -2412,21 +2396,19 @@ for (s in background_strains) { annotate("text", x = c(unique(df2_rf$conc_num_factor)), y = .7, label = x_stats_df2_rf$SM) + theme_publication() - auc_stats <- ggplot(df2_rf, aes(conc_num_factor, auc)) + + auc_stats <- ggplot(df2_rf, aes(conc_num_factor, AUC)) + geom_point(position = "jitter", size = 1) + stat_summary( fun = mean, fun.min = function(x) mean(x) - sd(x), fun.max = function(x) mean(x) + sd(x), - geom = "errorbar", color = "red" - ) + + geom = "errorbar", color = "red") + stat_summary(fun = mean, geom = "point", color = "red") + scale_x_continuous( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + - ggtitle(paste(s, "Scatter RF for auc with SD", sep = " ")) + + labels = as.character(unique(df2_rf$conc_num))) + + ggtitle(paste(s, "Scatter RF for AUC with SD", sep = " ")) + coord_cartesian(ylim = c(0, 12500)) + annotate("text", x = -0.25, y = 11000, label = "NG") + annotate("text", x = -0.25, y = 10000, label = "DB") + @@ -2441,19 +2423,17 @@ for (s in background_strains) { scale_x_discrete( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + + labels = as.character(unique(df2_rf$conc_num))) + ggtitle(paste(s, "Scatter RF for L with SD", sep = " ")) + coord_cartesian(ylim = c(0, 130)) + theme_publication() - k_stats_box <- ggplot(df2_rf, aes(as.factor(conc_num_factor), k)) + + k_stats_box <- ggplot(df2_rf, aes(as.factor(conc_num_factor), K)) + geom_boxplot() + scale_x_discrete( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + + labels = as.character(unique(df2_rf$conc_num))) + ggtitle(paste(s, "Scatter RF for K with SD", sep = " ")) + coord_cartesian(ylim = c(0, 160)) + theme_publication() @@ -2463,20 +2443,19 @@ for (s in background_strains) { scale_x_discrete( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + + labels = as.character(unique(df2_rf$conc_num))) + ggtitle(paste(s, "Scatter RF for r with SD", sep = " ")) + coord_cartesian(ylim = c(0, 1)) + theme_publication() - auc_stats_box <- ggplot(df2_rf, aes(as.factor(conc_num_factor), auc)) + + auc_stats_box <- ggplot(df2_rf, aes(as.factor(conc_num_factor), AUC)) + geom_boxplot() + scale_x_discrete( name = unique(df$Drug[1]), breaks = unique(df2_rf$conc_num_factor), - labels = as.character(unique(df2_rf$conc_num)) - ) + - ggtitle(paste(s, "Scatter RF for auc with SD", sep = " ")) + coord_cartesian(ylim = c(12000, 0)) + + labels = as.character(unique(df2_rf$conc_num))) + + ggtitle(paste(s, "Scatter RF for AUC with SD", sep = " ")) + + coord_cartesian(ylim = c(12000, 0)) + theme_publication() grid.arrange(l_stats, k_stats, r_stats, auc_stats, ncol = 2, nrow = 2) @@ -2554,7 +2533,7 @@ for (s in background_strains) { } } - dev.off() + invisible(dev.off()) # Print rank plots for L and k gene interactions interaction_scores_adjust_missing <- interaction_scores @@ -2590,75 +2569,138 @@ for (s in background_strains) { # Rank plots rank_l_1sd <- ggplot(interaction_scores_adjust_missing, aes(l_rank, avg_zscore_l)) + - ggtitle("Average Z score vs. Rank for L above 1SD") + xlab("Rank") + ylab("Avg Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for L above 1SD") + + xlab("Rank") + + ylab("Avg Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = 10, label = paste("Deletion Enhancers =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_l >= 1, ])[1])) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = -10, label = paste("Deletion Suppressors =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_l <= -1, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = 10, + label = paste("Deletion Enhancers =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_l >= 1, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = -10, + label = paste("Deletion Suppressors =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_l <= -1, ])[1])) + theme_publication() rank_l_2sd <- ggplot(interaction_scores_adjust_missing, aes(l_rank, avg_zscore_l)) + - ggtitle("Average Z score vs. Rank for L above 2sd") + xlab("Rank") + ylab("Avg Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for L above 2sd") + + xlab("Rank") + + ylab("Avg Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = 10, label = paste("Deletion Enhancers =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_l >= 2, ])[1])) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = -10, label = paste("Deletion Suppressors =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_l <= -2, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = 10, + label = paste("Deletion Enhancers =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_l >= 2, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = -10, label = paste("Deletion Suppressors =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_l <= -2, ])[1])) + theme_publication() rank_l_3sd <- ggplot(interaction_scores_adjust_missing, aes(l_rank, avg_zscore_l)) + - ggtitle("Average Z score vs. Rank for L above 3sd") + xlab("Rank") + ylab("Avg Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for L above 3sd") + + xlab("Rank") + + ylab("Avg Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = 10, label = paste("Deletion Enhancers =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_l >= 3, ])[1])) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = -10, label = paste("Deletion Suppressors =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_l <= -3, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = 10, + label = paste("Deletion Enhancers =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_l >= 3, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = -10, + label = paste("Deletion Suppressors =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_l <= -3, ])[1])) + theme_publication() rank_k_1sd <- ggplot(interaction_scores_adjust_missing, aes(k_rank, avg_zscore_k)) + - ggtitle("Average Z score vs. Rank for K above 1SD") + xlab("Rank") + ylab("Avg Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for K above 1SD") + + xlab("Rank") + + ylab("Avg Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = -10, label = paste("Deletion Enhancers =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_k <= -1, ])[1])) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = 10, label = paste("Deletion Suppressors =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_k >= 1, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = -10, + label = paste("Deletion Enhancers =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_k <= -1, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = 10, + label = paste("Deletion Suppressors =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_k >= 1, ])[1])) + theme_publication() rank_k_2sd <- ggplot(interaction_scores_adjust_missing, aes(k_rank, avg_zscore_k)) + - ggtitle("Average Z score vs. Rank for K above 2sd") + xlab("Rank") + ylab("Avg Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for K above 2sd") + + xlab("Rank") + + ylab("Avg Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = -10, label = paste("Deletion Enhancers =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_k <= -2, ])[1])) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = 10, label = paste("Deletion Suppressors =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_k >= 2, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = -10, + label = paste("Deletion Enhancers =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_k <= -2, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = 10, + label = paste("Deletion Suppressors =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_k >= 2, ])[1])) + theme_publication() rank_k_3sd <- ggplot(interaction_scores_adjust_missing, aes(k_rank, avg_zscore_k)) + - ggtitle("Average Z score vs. Rank for K above 3sd") + xlab("Rank") + ylab("Avg Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for K above 3sd") + + xlab("Rank") + + ylab("Avg Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = -10, label = paste("Deletion Enhancers =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_k <= -3, ])[1])) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = 10, label = paste("Deletion Suppressors =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_k >= 3, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = -10, + label = paste("Deletion Enhancers =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_k <= -3, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = 10, + label = paste("Deletion Suppressors =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$avg_zscore_k >= 3, ])[1])) + theme_publication() rank_l_1sd_notext <- ggplot(interaction_scores_adjust_missing, aes(l_rank, avg_zscore_l)) + - ggtitle("Average Z score vs. Rank for L above 1SD") + xlab("Rank") + ylab("Avg Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for L above 1SD") + + xlab("Rank") + + ylab("Avg Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + theme_publication() @@ -2670,30 +2712,46 @@ for (s in background_strains) { theme_publication() rank_l_3sd_notext <- ggplot(interaction_scores_adjust_missing, aes(l_rank, avg_zscore_l)) + - ggtitle("Average Z score vs. Rank for L above 3sd") + xlab("Rank") + ylab("Avg Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for L above 3sd") + + xlab("Rank") + + ylab("Avg Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_k_1sd_notext <- ggplot(interaction_scores_adjust_missing, aes(k_rank, avg_zscore_k)) + - ggtitle("Average Z score vs. Rank for K above 1SD") + xlab("Rank") + ylab("Avg Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for K above 1SD") + + xlab("Rank") + + ylab("Avg Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_k_2sd_notext <- ggplot(interaction_scores_adjust_missing, aes(k_rank, avg_zscore_k)) + - ggtitle("Average Z score vs. Rank for K above 2sd") + xlab("Rank") + ylab("Avg Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for K above 2sd") + + xlab("Rank") + + ylab("Avg Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_k_3sd_notext <- ggplot(interaction_scores_adjust_missing, aes(k_rank, avg_zscore_k)) + - ggtitle("Average Z score vs. Rank for K above 3sd") + xlab("Rank") + ylab("Avg Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for K above 3sd") + + xlab("Rank") + + ylab("Avg Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + theme_publication() @@ -2721,113 +2779,197 @@ for (s in background_strains) { nrow = 2 ) - dev.off() + invisible(dev.off()) rank_l_1sd_lm <- ggplot(interaction_scores_adjust_missing, aes(l_rank_lm, z_lm_l)) + - ggtitle("Interaction Z score vs. Rank for L above 1SD") + xlab("Rank") + ylab("Int Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for L above 1SD") + + xlab("Rank") + + ylab("Int Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = 10, label = paste("Deletion Enhancers =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_l >= 1, ])[1])) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = -10, label = paste("Deletion Suppressors =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_l <= -1, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = 10, + label = paste("Deletion Enhancers =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_l >= 1, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = -10, + label = paste("Deletion Suppressors =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_l <= -1, ])[1])) + theme_publication() rank_l_2sd_lm <- ggplot(interaction_scores_adjust_missing, aes(l_rank_lm, z_lm_l)) + - ggtitle("Interaction Z score vs. Rank for L above 2sd") + xlab("Rank") + ylab("Int Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for L above 2sd") + + xlab("Rank") + + ylab("Int Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = 10, label = paste("Deletion Enhancers =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_l >= 2, ])[1])) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = -10, label = paste("Deletion Suppressors =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_l <= -2, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = 10, + label = paste("Deletion Enhancers =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_l >= 2, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = -10, + label = paste("Deletion Suppressors =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_l <= -2, ])[1])) + theme_publication() rank_l_3sd_lm <- ggplot(interaction_scores_adjust_missing, aes(l_rank_lm, z_lm_l)) + - ggtitle("Interaction Z score vs. Rank for L above 3sd") + xlab("Rank") + ylab("Int Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for L above 3sd") + + xlab("Rank") + + ylab("Int Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = 10, label = paste("Deletion Enhancers =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_l >= 3, ])[1])) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = -10, label = paste("Deletion Suppressors =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_l <= -3, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = 10, + label = paste("Deletion Enhancers =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_l >= 3, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = -10, + label = paste("Deletion Suppressors =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_l <= -3, ])[1])) + theme_publication() rank_k_1sd_lm <- ggplot(interaction_scores_adjust_missing, aes(k_rank_lm, z_lm_k)) + - ggtitle("Interaction Z score vs. Rank for K above 1SD") + xlab("Rank") + ylab("Int Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for K above 1SD") + + xlab("Rank") + + ylab("Int Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = -10, label = paste("Deletion Enhancers =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_k <= -1, ])[1])) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = 10, label = paste("Deletion Suppressors =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_k >= 1, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = -10, + label = paste("Deletion Enhancers =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_k <= -1, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = 10, + label = paste("Deletion Suppressors =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_k >= 1, ])[1])) + theme_publication() rank_k_2sd_lm <- ggplot(interaction_scores_adjust_missing, aes(k_rank_lm, z_lm_k)) + - ggtitle("Interaction Z score vs. Rank for K above 2sd") + xlab("Rank") + ylab("Int Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for K above 2sd") + + xlab("Rank") + + ylab("Int Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = -10, label = paste("Deletion Enhancers =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_k <= -2, ])[1])) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = 10, label = paste("Deletion Suppressors =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_k >= 2, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = -10, + label = paste("Deletion Enhancers =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_k <= -2, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = 10, + label = paste("Deletion Suppressors =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_k >= 2, ])[1])) + theme_publication() rank_k_3sd_lm <- ggplot(interaction_scores_adjust_missing, aes(k_rank_lm, z_lm_k)) + - ggtitle("Interaction Z score vs. Rank for K above 3sd") + xlab("Rank") + ylab("Int Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for K above 3sd") + + xlab("Rank") + + ylab("Int Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = -10, label = paste("Deletion Enhancers =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_k <= -3, ])[1])) + - annotate("text", x = (dim(interaction_scores_adjust_missing)[1] / 2), y = 10, label = paste("Deletion Suppressors =", - dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_k >= 3, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = -10, + label = paste("Deletion Enhancers =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_k <= -3, ])[1])) + + annotate("text", + x = (dim(interaction_scores_adjust_missing)[1] / 2), + y = 10, + label = paste("Deletion Suppressors =", + dim(interaction_scores_adjust_missing[interaction_scores_adjust_missing$z_lm_k >= 3, ])[1])) + theme_publication() rank_l_1sd_notext_lm <- ggplot(interaction_scores_adjust_missing, aes(l_rank_lm, z_lm_l)) + - ggtitle("Interaction Z score vs. Rank for L above 1SD") + xlab("Rank") + ylab("Int Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for L above 1SD") + + xlab("Rank") + + ylab("Int Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_l_2sd_notext_lm <- ggplot(interaction_scores_adjust_missing, aes(l_rank_lm, z_lm_l)) + - ggtitle("Interaction Z score vs. Rank for L above 2sd") + xlab("Rank") + ylab("Int Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for L above 2sd") + + xlab("Rank") + + ylab("Int Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_l_3sd_notext_lm <- ggplot(interaction_scores_adjust_missing, aes(l_rank_lm, z_lm_l)) + - ggtitle("Interaction Z score vs. Rank for L above 3sd") + xlab("Rank") + ylab("Int Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for L above 3sd") + + xlab("Rank") + + ylab("Int Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_k_1sd_notext_lm <- ggplot(interaction_scores_adjust_missing, aes(k_rank_lm, z_lm_k)) + - ggtitle("Interaction Z score vs. Rank for K above 1SD") + xlab("Rank") + ylab("Int Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for K above 1SD") + + xlab("Rank") + + ylab("Int Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_k_2sd_notext_lm <- ggplot(interaction_scores_adjust_missing, aes(k_rank_lm, z_lm_k)) + - ggtitle("Interaction Z score vs. Rank for K above 2sd") + xlab("Rank") + ylab("Int Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for K above 2sd") + + xlab("Rank") + + ylab("Int Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_k_3sd_notext_lm <- ggplot(interaction_scores_adjust_missing, aes(k_rank_lm, z_lm_k)) + - ggtitle("Interaction Z score vs. Rank for K above 3sd") + xlab("Rank") + ylab("Int Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for K above 3sd") + + xlab("Rank") + + ylab("Int Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + theme_publication() @@ -2853,7 +2995,7 @@ for (s in background_strains) { ncol = 3, nrow = 2 ) - dev.off() + invisible(dev.off()) df_na_rm <- interaction_scores[!is.na(interaction_scores$z_lm_l) | !is.na(interaction_scores$avg_zscore_l), ] @@ -2887,37 +3029,67 @@ for (s in background_strains) { geom_point(aes(color = Overlap), shape = 3) + geom_smooth(method = "lm", color = 1) + ggtitle("Avg Zscore vs lm L") + - geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm$r.squared, 2))) + theme_publication_legend_right()) + geom_rect( + aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), + color = "grey20", + size = 0.25, + alpha = 0.1, + inherit.aes = FALSE, + fill = NA) + + annotate("text", + x = 0, y = 0, label = paste("R-squared = ", round(l_lm$r.squared, 2))) + + theme_publication_legend_right() + ) print(ggplot(df_na_rm, aes(avg_zscore_k, z_lm_k)) + geom_point(aes(color = Overlap), shape = 3) + geom_smooth(method = "lm", color = 1) + ggtitle("Avg Zscore vs lm K") + - geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(k_lm$r.squared, 2))) + theme_publication_legend_right()) + geom_rect( + aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), + color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + + annotate("text", + x = 0, y = 0, label = paste("R-squared = ", round(k_lm$r.squared, 2))) + + theme_publication_legend_right() + ) print(ggplot(df_na_rm, aes(avg_zscore_r, z_lm_r)) + geom_point(aes(color = Overlap), shape = 3) + geom_smooth(method = "lm", color = 1) + ggtitle("Avg Zscore vs lm r") + - geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(r_lm$r.squared, 2))) + theme_publication_legend_right()) + geom_rect( + aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), + color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + + annotate("text", + x = 0, y = 0, label = paste("R-squared = ", round(r_lm$r.squared, 2))) + + theme_publication_legend_right() + ) print(ggplot(df_na_rm, aes(avg_zscore_auc, z_lm_auc)) + geom_point(aes(color = Overlap), shape = 3) + geom_smooth(method = "lm", color = 1) + ggtitle("Avg Zscore vs lm AUC") + - geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(auc_lm$r.squared, 2))) + theme_publication_legend_right()) + geom_rect( + aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), + color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + + annotate("text", + x = 0, y = 0, label = paste("R-squared = ", round(auc_lm$r.squared, 2))) + + theme_publication_legend_right() + ) - dev.off() + invisible(dev.off()) - lm_v_zscore_l <- ggplot(df_na_rm, aes(avg_zscore_l, z_lm_l, ORF = OrfRep, Gene = Gene, NG = NG, SM = SM, DB = DB)) + + lm_v_zscore_l <- + ggplot(df_na_rm, aes(avg_zscore_l, z_lm_l, ORF = OrfRep, Gene = Gene, NG = NG, SM = SM, DB = DB)) + geom_point(aes(color = Overlap), shape = 3) + geom_smooth(method = "lm", color = 1) + ggtitle("Avg Zscore vs lm L") + - geom_rect(aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA) + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm$r.squared, 2))) + theme_publication_legend_right() + geom_rect( + aes(xmin = -2, xmax = 2, ymin = -2, ymax = 2), + color = "grey20", size = 0.25, alpha = 0.1, inherit.aes = FALSE, fill = NA + ) + + annotate("text", + x = 0, y = 0, label = paste("R-squared = ", round(l_lm$r.squared, 2))) + + theme_publication_legend_right() pgg <- ggplotly(lm_v_zscore_l) plotly_path <- file.path(out_dir, "avg_zscore_vs_lm_na_rm.html") @@ -2950,7 +3122,10 @@ for (s in background_strains) { geom_point(aes(color = Overlap), shape = 3) + geom_smooth(method = "lm", color = 1) + ggtitle("Rank Avg Zscore vs lm L") + - annotate("text", x = num_genes_na_rm2, y = num_genes_na_rm2, label = paste("R-squared = ", round(l_lm2$r.squared, 2))) + + annotate("text", + x = num_genes_na_rm2, + y = num_genes_na_rm2, + label = paste("R-squared = ", round(l_lm2$r.squared, 2))) + theme_publication_legend_right() ) @@ -2959,7 +3134,10 @@ for (s in background_strains) { geom_point(aes(color = Overlap), shape = 3) + geom_smooth(method = "lm", color = 1) + ggtitle("Rank Avg Zscore vs lm K") + - annotate("text", x = num_genes_na_rm2, y = num_genes_na_rm2, label = paste("R-squared = ", round(k_lm2$r.squared, 2))) + + annotate("text", + x = num_genes_na_rm2, + y = num_genes_na_rm2, + label = paste("R-squared = ", round(k_lm2$r.squared, 2))) + theme_publication_legend_right() ) @@ -2968,7 +3146,10 @@ for (s in background_strains) { geom_point(aes(color = Overlap), shape = 3) + geom_smooth(method = "lm", color = 1) + ggtitle("Rank Avg Zscore vs lm r") + - annotate("text", x = num_genes_na_rm2, y = num_genes_na_rm2, label = paste("R-squared = ", round(r_lm2$r.squared, 2))) + + annotate("text", + x = num_genes_na_rm2, + y = num_genes_na_rm2, + label = paste("R-squared = ", round(r_lm2$r.squared, 2))) + theme_publication_legend_right() ) @@ -2977,105 +3158,204 @@ for (s in background_strains) { geom_point(aes(color = Overlap), shape = 3) + geom_smooth(method = "lm", color = 1) + ggtitle("Rank of Avg Zscore vs lm AUC") + - annotate("text", x = num_genes_na_rm2, y = num_genes_na_rm2, label = paste("R-squared = ", round(auc_lm2$r.squared, 2))) + + annotate("text", + x = num_genes_na_rm2, + y = num_genes_na_rm2, + label = paste("R-squared = ", round(auc_lm2$r.squared, 2))) + theme_publication_legend_right() ) - dev.off() + invisible(dev.off()) rank_l_1sd <- ggplot(df_na_rm, aes(l_rank, avg_zscore_l)) + - ggtitle("Average Z score vs. Rank for L above 1SD") + xlab("Rank") + ylab("Avg Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for L above 1SD") + + xlab("Rank") + + ylab("Avg Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = 10, label = paste("Deletion Enhancers =", dim(df_na_rm[df_na_rm$avg_zscore_l >= 1, ])[1])) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = -10, label = paste("Deletion Suppressors =", dim(df_na_rm[df_na_rm$avg_zscore_l <= -1, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = 10, + label = paste("Deletion Enhancers =", + dim(df_na_rm[df_na_rm$avg_zscore_l >= 1, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = -10, + label = paste("Deletion Suppressors =", + dim(df_na_rm[df_na_rm$avg_zscore_l <= -1, ])[1])) + theme_publication() rank_l_2sd <- ggplot(df_na_rm, aes(l_rank, avg_zscore_l)) + - ggtitle("Average Z score vs. Rank for L above 2sd") + xlab("Rank") + ylab("Avg Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for L above 2sd") + + xlab("Rank") + + ylab("Avg Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = 10, label = paste("Deletion Enhancers =", dim(df_na_rm[df_na_rm$avg_zscore_l >= 2, ])[1])) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = -10, label = paste("Deletion Suppressors =", dim(df_na_rm[df_na_rm$avg_zscore_l <= -2, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = 10, + label = paste("Deletion Enhancers =", + dim(df_na_rm[df_na_rm$avg_zscore_l >= 2, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = -10, + label = paste("Deletion Suppressors =", + dim(df_na_rm[df_na_rm$avg_zscore_l <= -2, ])[1])) + theme_publication() rank_l_3sd <- ggplot(df_na_rm, aes(l_rank, avg_zscore_l)) + - ggtitle("Average Z score vs. Rank for L above 3sd") + xlab("Rank") + ylab("Avg Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for L above 3sd") + + xlab("Rank") + + ylab("Avg Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = 10, label = paste("Deletion Enhancers =", dim(df_na_rm[df_na_rm$avg_zscore_l >= 3, ])[1])) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = -10, label = paste("Deletion Suppressors =", dim(df_na_rm[df_na_rm$avg_zscore_l <= -3, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = 10, + label = paste("Deletion Enhancers =", + dim(df_na_rm[df_na_rm$avg_zscore_l >= 3, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = -10, + label = paste("Deletion Suppressors =", + dim(df_na_rm[df_na_rm$avg_zscore_l <= -3, ])[1])) + theme_publication() rank_k_1sd <- ggplot(df_na_rm, aes(k_rank, avg_zscore_k)) + - ggtitle("Average Z score vs. Rank for K above 1SD") + xlab("Rank") + ylab("Avg Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for K above 1SD") + + xlab("Rank") + + ylab("Avg Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = -10, label = paste("Deletion Enhancers =", dim(df_na_rm[df_na_rm$avg_zscore_k <= -1, ])[1])) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = 10, label = paste("Deletion Suppressors =", dim(df_na_rm[df_na_rm$avg_zscore_k >= 1, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = -10, + label = paste("Deletion Enhancers =", + dim(df_na_rm[df_na_rm$avg_zscore_k <= -1, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = 10, + label = paste("Deletion Suppressors =", + dim(df_na_rm[df_na_rm$avg_zscore_k >= 1, ])[1])) + theme_publication() rank_k_2sd <- ggplot(df_na_rm, aes(k_rank, avg_zscore_k)) + - ggtitle("Average Z score vs. Rank for K above 2sd") + xlab("Rank") + ylab("Avg Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for K above 2sd") + + xlab("Rank") + + ylab("Avg Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = -10, label = paste("Deletion Enhancers =", dim(df_na_rm[df_na_rm$avg_zscore_k <= -2, ])[1])) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = 10, label = paste("Deletion Suppressors =", dim(df_na_rm[df_na_rm$avg_zscore_k >= 2, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = -10, + label = paste("Deletion Enhancers =", + dim(df_na_rm[df_na_rm$avg_zscore_k <= -2, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = 10, + label = paste("Deletion Suppressors =", + dim(df_na_rm[df_na_rm$avg_zscore_k >= 2, ])[1])) + theme_publication() rank_k_3sd <- ggplot(df_na_rm, aes(k_rank, avg_zscore_k)) + - ggtitle("Average Z score vs. Rank for K above 3sd") + xlab("Rank") + ylab("Avg Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for K above 3sd") + + xlab("Rank") + + ylab("Avg Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = -10, label = paste("Deletion Enhancers =", dim(df_na_rm[df_na_rm$avg_zscore_k <= -3, ])[1])) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = 10, label = paste("Deletion Suppressors =", dim(df_na_rm[df_na_rm$avg_zscore_k >= 3, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = -10, + label = paste("Deletion Enhancers =", + dim(df_na_rm[df_na_rm$avg_zscore_k <= -3, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = 10, + label = paste("Deletion Suppressors =", + dim(df_na_rm[df_na_rm$avg_zscore_k >= 3, ])[1])) + theme_publication() rank_l_1sd_notext <- ggplot(df_na_rm, aes(l_rank, avg_zscore_l)) + - ggtitle("Average Z score vs. Rank for L above 1SD") + xlab("Rank") + ylab("Avg Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for L above 1SD") + + xlab("Rank") + + ylab("Avg Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_l_2sd_notext <- ggplot(df_na_rm, aes(l_rank, avg_zscore_l)) + - ggtitle("Average Z score vs. Rank for L above 2sd") + xlab("Rank") + ylab("Avg Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for L above 2sd") + + xlab("Rank") + + ylab("Avg Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_l_3sd_notext <- ggplot(df_na_rm, aes(l_rank, avg_zscore_l)) + - ggtitle("Average Z score vs. Rank for L above 3sd") + xlab("Rank") + ylab("Avg Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for L above 3sd") + + xlab("Rank") + + ylab("Avg Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_k_1sd_notext <- ggplot(df_na_rm, aes(k_rank, avg_zscore_k)) + - ggtitle("Average Z score vs. Rank for K above 1SD") + xlab("Rank") + ylab("Avg Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for K above 1SD") + + xlab("Rank") + + ylab("Avg Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_k_2sd_notext <- ggplot(df_na_rm, aes(k_rank, avg_zscore_k)) + - ggtitle("Average Z score vs. Rank for K above 2sd") + xlab("Rank") + ylab("Avg Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for K above 2sd") + + xlab("Rank") + + ylab("Avg Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_k_3sd_notext <- ggplot(df_na_rm, aes(k_rank, avg_zscore_k)) + - ggtitle("Average Z score vs. Rank for K above 3sd") + xlab("Rank") + ylab("Avg Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Average Z score vs. Rank for K above 3sd") + + xlab("Rank") + + ylab("Avg Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + theme_publication() @@ -3101,101 +3381,195 @@ for (s in background_strains) { ncol = 3, nrow = 2 ) - dev.off() + invisible(dev.off()) rank_l_1sd_lm <- ggplot(df_na_rm, aes(l_rank_lm, z_lm_l)) + - ggtitle("Interaction Z score vs. Rank for L above 1SD") + xlab("Rank") + ylab("Int Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for L above 1SD") + + xlab("Rank") + + ylab("Int Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = 10, label = paste("Deletion Enhancers =", dim(df_na_rm[df_na_rm$z_lm_l >= 1, ])[1])) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = -10, label = paste("Deletion Suppressors =", dim(df_na_rm[df_na_rm$z_lm_l <= -1, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = 10, label = paste("Deletion Enhancers =", + dim(df_na_rm[df_na_rm$z_lm_l >= 1, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = -10, + label = paste("Deletion Suppressors =", + dim(df_na_rm[df_na_rm$z_lm_l <= -1, ])[1])) + theme_publication() rank_l_2sd_lm <- ggplot(df_na_rm, aes(l_rank_lm, z_lm_l)) + - ggtitle("Interaction Z score vs. Rank for L above 2sd") + xlab("Rank") + ylab("Int Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for L above 2sd") + + xlab("Rank") + + ylab("Int Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = 10, label = paste("Deletion Enhancers =", dim(df_na_rm[df_na_rm$z_lm_l >= 2, ])[1])) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = -10, label = paste("Deletion Suppressors =", dim(df_na_rm[df_na_rm$z_lm_l <= -2, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = 10, + label = paste("Deletion Enhancers =", + dim(df_na_rm[df_na_rm$z_lm_l >= 2, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = -10, + label = paste("Deletion Suppressors =", + dim(df_na_rm[df_na_rm$z_lm_l <= -2, ])[1])) + theme_publication() rank_l_3sd_lm <- ggplot(df_na_rm, aes(l_rank_lm, z_lm_l)) + - ggtitle("Interaction Z score vs. Rank for L above 3sd") + xlab("Rank") + ylab("Int Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for L above 3sd") + + xlab("Rank") + + ylab("Int Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = 10, label = paste("Deletion Enhancers =", dim(df_na_rm[df_na_rm$z_lm_l >= 3, ])[1])) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = -10, label = paste("Deletion Suppressors =", dim(df_na_rm[df_na_rm$z_lm_l <= -3, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = 10, + label = paste("Deletion Enhancers =", + dim(df_na_rm[df_na_rm$z_lm_l >= 3, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = -10, + label = paste("Deletion Suppressors =", + dim(df_na_rm[df_na_rm$z_lm_l <= -3, ])[1])) + theme_publication() rank_k_1sd_lm <- ggplot(df_na_rm, aes(k_rank_lm, z_lm_k)) + - ggtitle("Interaction Z score vs. Rank for K above 1SD") + xlab("Rank") + ylab("Int Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for K above 1SD") + + xlab("Rank") + + ylab("Int Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = -10, label = paste("Deletion Enhancers =", dim(df_na_rm[df_na_rm$z_lm_k <= -1, ])[1])) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = 10, label = paste("Deletion Suppressors =", dim(df_na_rm[df_na_rm$z_lm_k >= 1, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = -10, + label = paste("Deletion Enhancers =", + dim(df_na_rm[df_na_rm$z_lm_k <= -1, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = 10, + label = paste("Deletion Suppressors =", + dim(df_na_rm[df_na_rm$z_lm_k >= 1, ])[1])) + theme_publication() rank_k_2sd_lm <- ggplot(df_na_rm, aes(k_rank_lm, z_lm_k)) + - ggtitle("Interaction Z score vs. Rank for K above 2sd") + xlab("Rank") + ylab("Int Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for K above 2sd") + + xlab("Rank") + + ylab("Int Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = -10, label = paste("Deletion Enhancers =", dim(df_na_rm[df_na_rm$z_lm_k <= -2, ])[1])) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = 10, label = paste("Deletion Suppressors =", dim(df_na_rm[df_na_rm$z_lm_k >= 2, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = -10, + label = paste("Deletion Enhancers =", + dim(df_na_rm[df_na_rm$z_lm_k <= -2, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = 10, + label = paste("Deletion Suppressors =", + dim(df_na_rm[df_na_rm$z_lm_k >= 2, ])[1])) + theme_publication() rank_k_3sd_lm <- ggplot(df_na_rm, aes(k_rank_lm, z_lm_k)) + - ggtitle("Interaction Z score vs. Rank for K above 3sd") + xlab("Rank") + ylab("Int Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for K above 3sd") + + xlab("Rank") + + ylab("Int Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = -10, label = paste("Deletion Enhancers =", dim(df_na_rm[df_na_rm$z_lm_k <= -3, ])[1])) + - annotate("text", x = (dim(df_na_rm)[1] / 2), y = 10, label = paste("Deletion Suppressors =", dim(df_na_rm[df_na_rm$z_lm_k >= 3, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = -10, label = paste("Deletion Enhancers =", + dim(df_na_rm[df_na_rm$z_lm_k <= -3, ])[1])) + + annotate("text", + x = (dim(df_na_rm)[1] / 2), + y = 10, + label = paste("Deletion Suppressors =", + dim(df_na_rm[df_na_rm$z_lm_k >= 3, ])[1])) + theme_publication() rank_l_1sd_notext_lm <- ggplot(df_na_rm, aes(l_rank_lm, z_lm_l)) + - ggtitle("Interaction Z score vs. Rank for L above 1SD") + xlab("Rank") + ylab("Int Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for L above 1SD") + + xlab("Rank") + + ylab("Int Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_l_2sd_notext_lm <- ggplot(df_na_rm, aes(l_rank_lm, z_lm_l)) + - ggtitle("Interaction Z score vs. Rank for L above 2sd") + xlab("Rank") + ylab("Int Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for L above 2sd") + + xlab("Rank") + + ylab("Int Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_l_3sd_notext_lm <- ggplot(df_na_rm, aes(l_rank_lm, z_lm_l)) + - ggtitle("Interaction Z score vs. Rank for L above 3sd") + xlab("Rank") + ylab("Int Z score L") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for L above 3sd") + + xlab("Rank") + + ylab("Int Z score L") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_k_1sd_notext_lm <- ggplot(df_na_rm, aes(k_rank_lm, z_lm_k)) + - ggtitle("Interaction Z score vs. Rank for K above 1SD") + xlab("Rank") + ylab("Int Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for K above 1SD") + + xlab("Rank") + + ylab("Int Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (1), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-1), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-1, 1)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_k_2sd_notext_lm <- ggplot(df_na_rm, aes(k_rank_lm, z_lm_k)) + - ggtitle("Interaction Z score vs. Rank for K above 2sd") + xlab("Rank") + ylab("Int Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for K above 2sd") + + xlab("Rank") + + ylab("Int Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (2), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-2), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-2, 2)) + geom_point(size = 0.1, shape = 3) + theme_publication() rank_k_3sd_notext_lm <- ggplot(df_na_rm, aes(k_rank_lm, z_lm_k)) + - ggtitle("Interaction Z score vs. Rank for K above 3sd") + xlab("Rank") + ylab("Int Z score K") + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + - annotate("rect", xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + + ggtitle("Interaction Z score vs. Rank for K above 3sd") + + xlab("Rank") + + ylab("Int Z score K") + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (3), ymax = Inf, fill = "#542788", alpha = 0.3) + + annotate("rect", + xmin = -Inf, xmax = Inf, ymin = (-3), ymax = -Inf, fill = "orange", alpha = 0.3) + geom_hline(yintercept = c(-3, 3)) + geom_point(size = 0.1, shape = 3) + theme_publication() @@ -3221,7 +3595,7 @@ for (s in background_strains) { ncol = 3, nrow = 2 ) - dev.off() + invisible(dev.off()) } # Get the linear model info and the r-squared value for all CPPs in results 1 vs results 2 @@ -3246,7 +3620,10 @@ ggplot(df_na_rm, aes(z_lm_l, z_lm_k)) + ggtitle("Interaction L vs. Interaction K") + xlab("z-score L") + ylab("z-score K") + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm_1$r.squared, 3))) + + annotate("text", + x = 0, + y = 0, + label = paste("R-squared = ", round(l_lm_1$r.squared, 3))) + theme_publication_legend_right() + theme( panel.grid.major = element_blank(), @@ -3263,7 +3640,10 @@ ggplot(df_na_rm, aes(z_lm_l, z_lm_r)) + ggtitle("Interaction L vs. Interaction r") + xlab("z-score L") + ylab("z-score r") + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm_2$r.squared, 3))) + + annotate("text", + x = 0, + y = 0, + label = paste("R-squared = ", round(l_lm_2$r.squared, 3))) + theme_publication_legend_right() + theme( panel.grid.major = element_blank(), @@ -3280,7 +3660,10 @@ geom_smooth(method = "lm", color = "tomato3") + ggtitle("Interaction L vs. Interaction AUC") + xlab("z-score L") + ylab("z-score AUC") + -annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm_3$r.squared, 3))) + +annotate("text", + x = 0, + y = 0, + label = paste("R-squared = ", round(l_lm_3$r.squared, 3))) + theme_publication_legend_right() + theme( panel.grid.major = element_blank(), @@ -3297,7 +3680,10 @@ ggplot(df_na_rm, aes(z_lm_k, z_lm_r)) + ggtitle("Interaction K vs. Interaction r") + xlab("z-score K") + ylab("z-score r") + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm_4$r.squared, 3))) + + annotate("text", + x = 0, + y = 0, + label = paste("R-squared = ", round(l_lm_4$r.squared, 3))) + theme_publication_legend_right() + theme( panel.grid.major = element_blank(), @@ -3314,7 +3700,10 @@ ggplot(df_na_rm, aes(z_lm_k, z_lm_auc)) + ggtitle("Interaction K vs. Interaction AUC") + xlab("z-score K") + ylab("z-score AUC") + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm_5$r.squared, 3))) + + annotate("text", + x = 0, + y = 0, + label = paste("R-squared = ", round(l_lm_5$r.squared, 3))) + theme_publication_legend_right() + theme( panel.grid.major = element_blank(), @@ -3331,7 +3720,10 @@ ggplot(df_na_rm, aes(z_lm_r, z_lm_auc)) + ggtitle("Interaction r vs. Interaction AUC") + xlab("z-score r") + ylab("z-score AUC") + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm_6$r.squared, 3))) + + annotate("text", + x = 0, + y = 0, + label = paste("R-squared = ", round(l_lm_6$r.squared, 3))) + theme_publication_legend_right() + theme( panel.grid.major = element_blank(), @@ -3349,7 +3741,10 @@ ggplot(df_na_rm, aes(z_lm_l, z_lm_k)) + ggtitle("Interaction L vs. Interaction K") + xlab("z-score L") + ylab("z-score K") + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm_1$r.squared, 3))) + + annotate("text", + x = 0, + y = 0, + label = paste("R-squared = ", round(l_lm_1$r.squared, 3))) + theme_publication_legend_right() + theme( panel.grid.major = element_blank(), @@ -3366,7 +3761,10 @@ ggplot(df_na_rm, aes(z_lm_l, z_lm_r)) + ggtitle("Interaction L vs. Interaction r") + xlab("z-score L") + ylab("z-score r") + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm_2$r.squared, 3))) + + annotate("text", + x = 0, + y = 0, + label = paste("R-squared = ", round(l_lm_2$r.squared, 3))) + theme_publication_legend_right() + theme( panel.grid.major = element_blank(), @@ -3383,7 +3781,10 @@ ggplot(df_na_rm, aes(z_lm_l, z_lm_auc)) + ggtitle("Interaction L vs. Interaction AUC") + xlab("z-score L") + ylab("z-score AUC") + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm_3$r.squared, 3))) + + annotate("text", + x = 0, + y = 0, + label = paste("R-squared = ", round(l_lm_3$r.squared, 3))) + theme_publication_legend_right() + theme( panel.grid.major = element_blank(), @@ -3400,7 +3801,10 @@ ggplot(df_na_rm, aes(z_lm_k, z_lm_r)) + ggtitle("Interaction K vs. Interaction r") + xlab("z-score K") + ylab("z-score r") + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm_4$r.squared, 3))) + + annotate("text", + x = 0, + y = 0, + label = paste("R-squared = ", round(l_lm_4$r.squared, 3))) + theme_publication_legend_right() + theme( panel.grid.major = element_blank(), @@ -3417,7 +3821,10 @@ ggplot(df_na_rm, aes(z_lm_k, z_lm_auc)) + ggtitle("Interaction K vs. Interaction AUC") + xlab("z-score K") + ylab("z-score AUC") + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm_5$r.squared, 3))) + + annotate("text", + x = 0, + y = 0, + label = paste("R-squared = ", round(l_lm_5$r.squared, 3))) + theme_publication_legend_right() + theme( panel.grid.major = element_blank(), @@ -3434,7 +3841,10 @@ ggplot(df_na_rm, aes(z_lm_r, z_lm_auc)) + ggtitle("Interaction r vs. Interaction AUC") + xlab("z-score r") + ylab("z-score AUC") + - annotate("text", x = 0, y = 0, label = paste("R-squared = ", round(l_lm_6$r.squared, 3))) + + annotate("text", + x = 0, + y = 0, + label = paste("R-squared = ", round(l_lm_6$r.squared, 3))) + theme_publication_legend_right() + theme( panel.grid.major = element_blank(), @@ -3445,7 +3855,7 @@ ggplot(df_na_rm, aes(z_lm_r, z_lm_auc)) + axis.title.y = element_text(size = 18) ) -dev.off() +invisible(dev.off()) # write.csv(Labels, file.path("../Code/Parameters.csv"), row.names = FALSE) -timestamp() +# timestamp() diff --git a/workflow/apps/r/joinInteractExps.R b/workflow/apps/r/joinInteractExps.R index b8fd9d84..b724502a 100644 --- a/workflow/apps/r/joinInteractExps.R +++ b/workflow/apps/r/joinInteractExps.R @@ -55,8 +55,8 @@ print(length(input_files)) # Join the two files at a time as a function of how many inputFile # list the larger file first ? in this example X2 has the larger number of genes # If X1 has a larger number of genes, switch the order of X1 and X2 -if (length(input_files) == 1) { - print("Only one experiment to compare, skipping join") +if (length(input_files) < 2) { + print("Note enough Exps to compare, skipping join") stop("Exiting script") } @@ -65,20 +65,17 @@ if (length(input_files) >= 2) { X2 <- read.csv(file = input_files[2], stringsAsFactors = FALSE) X <- join(X1, X2, by = "OrfRep") OBH <- X[, order(colnames(X))] # OrderByHeader - headSel <- select(OBH, contains("OrfRep"), matches("Gene"), - contains("Z_lm_K"), contains("Z_Shift_K"), contains("Z_lm_L"), contains("Z_Shift_L")) - headSel <- select(headSel, -"Gene.1") # remove "Gene.1 column - headSel2 <- select(OBH, contains("OrfRep"), matches("Gene")) #Frame for interleaving Z_lm with Shift colums - headSel2 <- select(headSel2, -"Gene.1") # remove "Gene.1 column #Frame for interleaving Z_lm with Shift colums + headers <- select(OBH, contains("OrfRep"), matches("Gene"), + contains("z_lm_k"), contains("z_shift_k"), contains("z_lm_l"), contains("z_shift_l")) + headSel <- select(headers, -"Gene.1") # remove "Gene.1 column + headSel2 <- select(OBH, contains("OrfRep"), matches("Gene")) # frame for interleaving Z_lm with Shift colums + headSel2 <- select(headSel2, -"Gene.1") # remove "Gene.1 column # frame for interleaving Z_lm with Shift colums } if (length(input_files) >= 3) { X3 <- read.csv(file = input_files[3], stringsAsFactors = FALSE) X <- join(X, X3, by = "OrfRep") - OBH <- X[, order(colnames(X))] # OrderByHeader - headSel <- select(OBH, contains("OrfRep"), matches("Gene"), - contains("Z_lm_K"), contains("Z_Shift_K"), contains("Z_lm_L"), contains("Z_Shift_L")) - headSel <- select(headSel, -"Gene.1", -"Gene.2") + headSel <- select(headers, -"Gene.1", -"Gene.2") headSel2 <- select(OBH, contains("OrfRep"), matches("Gene")) headSel2 <- select(headSel2, -"Gene.1", -"Gene.2") } @@ -86,16 +83,15 @@ if (length(input_files) >= 3) { if (length(input_files) >= 4) { X4 <- read.csv(file = input_files[4], stringsAsFactors = FALSE) X <- join(X, X4, by = "OrfRep") - OBH <- X[, order(colnames(X))] # OrderByHeader - headSel <- select(OBH, contains("OrfRep"), matches("Gene"), - contains("Z_lm_K"), contains("Z_Shift_K"), contains("Z_lm_L"), contains("Z_Shift_L")) - headSel <- select(headSel, -"Gene.1", -"Gene.2", -"Gene.3") + headSel <- select(headers, -"Gene.1", -"Gene.2", -"Gene.3") headSel2 <- select(OBH, contains("OrfRep"), matches("Gene")) headSel2 <- select(headSel2, -"Gene.1", -"Gene.2", -"Gene.3") } +print(headers) # headSel$contains("Z_Shift") %>% replace_na(0.001) headers <- colnames(headSel) +print(headers) i <- 0 for (i in 1:length(headers)) { if (grepl("Shift", headers[i])) { @@ -107,8 +103,8 @@ for (i in 1:length(headers)) { } # 2SD option code to exclude Z_lm values less than 2 standard Deviations -REMcRdy <- select(headSel, contains("OrfRep"), matches("Gene"), contains("Z_lm_")) -shiftOnly <- select(headSel, contains("OrfRep"), matches("Gene"), contains("Z_Shift")) +REMcRdy <- select(headSel, contains("OrfRep"), matches("Gene"), contains("z_lm_")) +shiftOnly <- select(headSel, contains("OrfRep"), matches("Gene"), contains("z_shift")) # Code to replace the numeric (.1 .2 .3) headers with experiment names from StudyInfo.txt Labels <- read.csv(file = study_info, stringsAsFactors = FALSE, sep = ",") diff --git a/workflow/qhtcp-workflow b/workflow/qhtcp-workflow index a6d56811..ebab9f9d 100755 --- a/workflow/qhtcp-workflow +++ b/workflow/qhtcp-workflow @@ -348,14 +348,11 @@ backup() { debug "Running: ${FUNCNAME[0]} $*" for f in "$@"; do [[ -e $f ]] || continue - count=1 + declare count=1 while [[ -e $f.bk.$count ]]; do ((count++)) done - echo "Backing up $f to $f.bk.$count" - debug "rsync -a $f $f.bk.$count" - rsync -a "$f" "$f.bk.$count" && - rm -rf "$f" + execute mv "$f" "$f.bk.$count" done } @@ -827,14 +824,14 @@ init_project() { u) echo "Updating project from template" echo "Only files that are newer in the template will be overwritten" - if rsync --archive --update "$QHTCP_TEMPLATE_DIR"/ "$QHTCP_RESULTS_DIR"; then + if execute rsync --archive --update "$QHTCP_TEMPLATE_DIR"/ "$QHTCP_RESULTS_DIR"; then echo "Project updated with template" fi ;; b) if backup "$QHTCP_RESULTS_DIR"; then mkdir "$QHTCP_RESULTS_DIR" - rsync --archive "$QHTCP_TEMPLATE_DIR"/ "$QHTCP_RESULTS_DIR" + execute rsync --archive "$QHTCP_TEMPLATE_DIR"/ "$QHTCP_RESULTS_DIR" echo "Created new project at $QHTCP_RESULTS_DIR" fi ;; @@ -850,10 +847,8 @@ init_project() { done else echo "Creating project results dir at $QHTCP_RESULTS_DIR" - debug "mkdir $QHTCP_RESULTS_DIR" - mkdir "$QHTCP_RESULTS_DIR" - debug "rsync --archive $QHTCP_TEMPLATE_DIR/ $QHTCP_RESULTS_DIR" - rsync --archive "$QHTCP_TEMPLATE_DIR"/ "$QHTCP_RESULTS_DIR" + execute mkdir "$QHTCP_RESULTS_DIR" + execute rsync --archive "$QHTCP_TEMPLATE_DIR"/ "$QHTCP_RESULTS_DIR" fi study_info @@ -1279,8 +1274,6 @@ module qhtcp # # TODO # -# * Suggest renaming StudiesQHTCP to something like qhtcp qhtcp_output or output -# * Move (hide) the study template somewhere else # * StudiesArchive should be smarter: # * Create a database with as much information as possible # * Write a function that easily loads and parses databse into easy-to-use variables @@ -1366,13 +1359,10 @@ qhtcp() { # Run R interactions script on all studies for study in "${STUDIES[@]}"; do - read -r num sd dir <<< "$study" - [[ -d $dir/zscores ]] || - execute mkdir "$dir/zscores" - [[ -d $dir/zscores/qc ]] || - execute mkdir "$dir/zscores/qc" - r_interactions "$num" "$sd" + read -r num sd _ <<< "$study" + r_interactions "$num" "$sd" & # run in parallel, catch with wait below done \ + && wait -n \ && remc \ && gtf \ && gta @@ -1750,8 +1740,9 @@ r_interactions() { declare script="$APPS_DIR/r/interactions.R" declare out_dir="${6:-"$QHTCP_RESULTS_DIR/Exp$1/zscores"}" - [[ -d $out_dir ]] && backup "$out_dir" - mkdir "$out_dir" + backup "$out_dir" + execute mkdir "$out_dir" + execute mkdir "$out_dir/qc" execute "$RSCRIPT" "$script" \ "$1" \ @@ -1850,7 +1841,7 @@ wrapper java_extract # @exitcode 1 if expected output file does not exist java_extract() { debug "Running: ${FUNCNAME[0]}" - classpath="$APPS_DIR/java/javaExtract.jar" + classpath="$APPS_DIR/java/weka-clustering.jar" output_file="${1:-$QHTCP_RESULTS_DIR}/REMcRdy_lm_only.csv-finalTable.csv" @@ -2337,7 +2328,7 @@ main() { parse_input "$@" # parse arguments with getopt - # ((DEBUG)) && declare -p + ((DEBUG)) && declare -p interactive_header "$@" @@ -2347,8 +2338,8 @@ main() { # fi for i in "${!PROJECTS[@]}"; do - if ! sanitize_pn "${PROJECTS[i]}"; then - echo "Project name ${PROJECTS[i]} is invalid" + if ! sanitize_pn "${PROJECTS[$i]}"; then + echo "Project name ${PROJECTS[$i]} is invalid" echo "Enter a replacement" ask_pn && unset "PROJECTS[i]" && PROJECTS+=("${ADD_PROJECTS[@]}") fi @@ -2356,15 +2347,13 @@ main() { # Exclude modules from --exclude for i in "${!MODULES[@]}"; do - [[ " ${EXCLUDE_MODULES[*]} " =~ [[:space:]]${MODULES[i]}[[:space:]] ]] && unset "MODULES[i]" + [[ " ${EXCLUDE_MODULES[*]} " =~ [[:space:]]${MODULES[i]}[[:space:]] ]] && unset "MODULES[$i]" done # Sanitize MODULES for i in "${!MODULES[@]}"; do if ! [[ " ${ALL_MODULES[*]} " =~ [[:space:]]${MODULES[i]}[[:space:]] ]]; then echo "Module ${MODULES[$i]} not in the module list" - echo "Available modules:" - printf "%s\n" "${ALL_MODULES[@]}" read -r -p "Enter replacement module name: " module ! [[ " ${ALL_MODULES[*]} " =~ [[:space:]]${module}[[:space:]] ]] || (echo "RTFM"; return 1) MODULES[i]="$module" @@ -2376,7 +2365,7 @@ main() { for i in "${!WRAPPERS[@]}"; do if ! [[ " ${ALL_WRAPPERS[*]} " =~ [[:space:]]${WRAPPERS[i]}[[:space:]] ]]; then echo "Wrapper ${WRAPPERS[$i]} not in the module list, removing" - unset "WRAPPERS[i]" "WRAPPERS[$((i+1))]" + unset "WRAPPERS[$i]" "WRAPPERS[$((i+1))]" fi continue 2 # skip the arguments string done @@ -2426,12 +2415,13 @@ main() { unset MODULES WRAPPERS EXCLUDE_MODULES STUDIES SET_STUDIES YES } -# (Safe) main loop -if main "$@"; then - for ((i=1; i<2; i++)); do - main && - i=0 - done -fi +# (Safe) main loop if we want to rerun automatically +# if main "$@"; then +# for ((i=1; i<2; i++)); do +# main && +# i=0 +# done +# fi +main "$@" exit $?