From e0120656413cb9f9a7887a57d3f2320c5f557969 Mon Sep 17 00:00:00 2001
From: Bryan Roessler <bryanroessler@gmail.com>
Date: Thu, 1 Aug 2024 15:14:32 -0400
Subject: [PATCH] Remove basename

---
 workflow/apps/matlab/easy/EASYconsole.m | 9 +++++----
 workflow/qhtcp-workflow                 | 1 +
 2 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/workflow/apps/matlab/easy/EASYconsole.m b/workflow/apps/matlab/easy/EASYconsole.m
index 02ae0d55..9ce839a5 100644
--- a/workflow/apps/matlab/easy/EASYconsole.m
+++ b/workflow/apps/matlab/easy/EASYconsole.m
@@ -54,6 +54,7 @@ function varargout = EASYconsole(varargin)
     fprintf('Using EASY script directory: %s from hardcoded default\n', easyDir);
   end
 
+  whos
 
   % Set projectScansDir intelligently
   if ~isempty(getenv('PROJECT_SCANS_DIR'))
@@ -107,7 +108,7 @@ function varargout = EASYconsole(varargin)
   end
 
   % Get the name of the project
-  projectName=basename(projectScansDir);
+  [~, projectName]=fileparts(projectScansDir);
 
   % Set the run-specific EASY output directory
   if ~isempty(getenv('EASY_RESULTS_DIR'))
@@ -127,7 +128,7 @@ function varargout = EASYconsole(varargin)
   if ~isempty(getenv('EASY_PROJECT_NAME'))
     easyProjectName=getenv('EASY_PROJECT_NAME');
   else
-    easyProjectName=basename(easyResultsDir);
+    [~, easyProjectName]=fileparts(easyResultsDir);
   end
 
   % User sanity check and warning
@@ -284,7 +285,7 @@ function NewExpDat_Callback(~, ~, ~)
     [matfile,easyResultsDir]=uiputfile('.mat');
     inputFileName=strrep(inputFile,'.mat','');
     
-    projectName=basename(easyResultsDir);
+    [~, projectName]=fileparts(easyResultsDir);
     % Set paths
     matDir=fullfile(easyResultsDir,'matResults');
     matFile=fullfile(matDir, projectName, '.mat');
@@ -355,7 +356,7 @@ function LoadDatFile_Callback(~, ~, ~)
     [matDir,matFile]=uigetfile('.mat','Open Experiment folder and data storage .mat file name','MultiSelect','off');
     load(matFile);
     easyResultsDir=fullfile(matDir,'..');
-    projectName=basename(easyResultsDir);
+    [~, projectName]=fileparts(easyResultsDir);
     projectScansDir=fullfile(easyResultsDir, '..', '..', 'scans', projectName);
 
     % TODO this is pretty hacky and needs something more explicit
diff --git a/workflow/qhtcp-workflow b/workflow/qhtcp-workflow
index 519a9837..3997aec3 100755
--- a/workflow/qhtcp-workflow
+++ b/workflow/qhtcp-workflow
@@ -296,6 +296,7 @@ print_header() {
 		                | | | | |_| | | || |   | |_) |                    
 		                | |_| |  _  | | || |___|  __/ 
 		                 \__\_|_| |_| |_| \____|_|          
+
 	EOF
 
   cat <<-EOF