From f11d21ba335ea16a75951c48bf4da1a20c72bf94 Mon Sep 17 00:00:00 2001 From: Bryan Roessler Date: Fri, 2 Aug 2024 22:01:02 -0400 Subject: [PATCH] Remove semi-colons in Rscript depends --- workflow/qhtcp-workflow | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/workflow/qhtcp-workflow b/workflow/qhtcp-workflow index 9e8ac00a..727376dd 100755 --- a/workflow/qhtcp-workflow +++ b/workflow/qhtcp-workflow @@ -554,8 +554,8 @@ install_dependencies() { # Install R packages for d in "${depends_r[@]}"; do - debug "$RSCRIPT -e \"if (!require(\"$d\", quietly = TRUE)); {install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")}\"" - "$RSCRIPT" -e "if (!require(\"$d\", quietly = TRUE)); {install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")}" + debug "$RSCRIPT -e \"if (!require(\"$d\", quietly = TRUE)) {install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")}\"" + "$RSCRIPT" -e "if (!require(\"$d\", quietly = TRUE)) {install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")}" done # Install Bioc packages