%EZlstBoxExtCmp.m
%Called by EZviewGui.m  NOT by EZvDatatip.m and EZlstBoxExt.m 
%Provides Trace data storage for use by EZfigTrendOL.m

RFcmpGFlg=0;
if isequal(tempLB(4:6),'cmp'), RFnum= str2double(tempLB(3));
elseif isequal(tempLB(3:6),'cmpG'), RFcmpGFlg=1;
elseif isequal(tempLB(3:6),'cmpP'), RFcmpGFlg=1; %I beleive handling will be the same as RFcmpG
end  
Exp(expN).cLmdEven= 0;  %Added for Cummulative Median and Mean 'C' plot
RFDMflg=0;
      if zoneSel==1,DexpN= (get(ghandles.DN1,'value')); end
      if zoneSel==2,DexpN= (get(ghandles.DN2,'value')); end
      if zoneSel==3,DexpN= (get(ghandles.DN3,'value')); end
    
try
p1=cell2mat(strfind(selGnOrf,'('));
p2=  cell2mat(strfind(selGnOrf,')'));
dmNum= str2num(selGnOrf{1}(p1+1:p2-1));
inDM=  str2num(selGnOrf{1}(p1+1:p2-1));
if (~isempty(dmNum)&& isnumeric(dmNum)),RFDMflg=1; end
catch
end


if RFDMflg, Exp(zoneSel).Dexp(DexpN).pertSel=dmNum;  end  %pertSel=pert;


sgdInfoOnly=get(handles.InfoToggle,'value');
if sgdInfoOnly==1
    EZviewInfoBox
else     %  Runs to end of EZlstBoxExt.m within this else condition

%***********PLOT Selected Gene/Orf Spot ******************************************
%try
if RFcmpGFlg==0    
K= Exp(expN).Dexp(DexpN).RFcmpK(RFnum).dm(inDM).med; Ks= num2str(K);
r= Exp(expN).Dexp(DexpN).RFcmpr(RFnum).dm(inDM).med; rs= num2str(r);
l= Exp(expN).Dexp(DexpN).RFcmpL(RFnum).dm(inDM).med; Ls= num2str(l);
Kl= K - Exp(expN).Dexp(DexpN).RFcmpK(RFnum).dm(inDM).std;
Ku= K + Exp(expN).Dexp(DexpN).RFcmpK(RFnum).dm(inDM).std;
rl= r - Exp(expN).Dexp(DexpN).RFcmpr(RFnum).dm(inDM).std;
ru= r + Exp(expN).Dexp(DexpN).RFcmpr(RFnum).dm(inDM).std;
lfast= l - Exp(expN).Dexp(DexpN).RFcmpL(RFnum).dm(inDM).std;
lslow= l + Exp(expN).Dexp(DexpN).RFcmpL(RFnum).dm(inDM).std;
elseif RFcmpGFlg==1
K= Exp(expN).Dexp(DexpN).RFcmpGK.dm(inDM).med; Ks= num2str(K);
r= Exp(expN).Dexp(DexpN).RFcmpGr.dm(inDM).med; rs= num2str(r);
l= Exp(expN).Dexp(DexpN).RFcmpGL.dm(inDM).med; Ls= num2str(l);
Kl= K - Exp(expN).Dexp(DexpN).RFcmpGK.dm(inDM).std;
Ku= K + Exp(expN).Dexp(DexpN).RFcmpGK.dm(inDM).std;
rl= r - Exp(expN).Dexp(DexpN).RFcmpGr.dm(inDM).std;
ru= r + Exp(expN).Dexp(DexpN).RFcmpGr.dm(inDM).std;
lfast= l - Exp(expN).Dexp(DexpN).RFcmpGL.dm(inDM).std;
lslow= l + Exp(expN).Dexp(DexpN).RFcmpGL.dm(inDM).std;
end
try Kstr=Ks(1:5); catch, Kstr = Ks(1:length(Ks)); end
try rstr=rs(1:5); catch, rstr = rs(1:length(rs)); end
try Lstr=Ls(1:5); catch, Lstr = Ls(1:length(Ls)); end


t=1:200;
clear g;

%try
g =  K ./ (1 +  exp(-r.* (t - l )));
gSlow= Kl ./ (1 +  exp(-rl.* (t - lslow )));
gFast= Ku ./ (1 +  exp(-ru.* (t - lfast )));
if K==0||r==0||l==0, g(1:200)=1;gSlow(1:200)=1;gFast(1:200)=1;end
%tser=(scan(1,plateNum).plate(1).t0Series(:));
%rawData= scan(1,plateNum).plate(1).intens(indx,:)/scan(1,plateNum).plate(1).Ag(indx);

            if zoneSel==1, plotAxes=ghandles.Paxes1; OLaxes=ghandles.OLaxes1;
                Dlaxes=ghandles.Dlaxes1;Dkaxes=ghandles.Dkaxes1;Draxes=ghandles.Draxes1;
            Exp(1).traceN=Exp(1).traceN+1;
            traceN=Exp(1).traceN;
            end
            if zoneSel==2, plotAxes=ghandles.Paxes2; OLaxes=ghandles.OLaxes2;Daxes=ghandles.Daxes2;
                Dlaxes=ghandles.Dlaxes2;Dkaxes=ghandles.Dkaxes2;Draxes=ghandles.Draxes2;
            Exp(2).traceN=Exp(2).traceN+1;
            traceN=Exp(2).traceN;
            end
            if zoneSel==3, plotAxes=ghandles.Paxes3; OLaxes=ghandles.OLaxes3;Daxes=ghandles.Daxes3;
                Dlaxes=ghandles.Dlaxes3;Dkaxes=ghandles.Dkaxes3;Draxes=ghandles.Draxes3;
            Exp(3).traceN=Exp(3).traceN+1;
            traceN=Exp(3).traceN;
            end
plot(plotAxes,t,g);hold (plotAxes,'on');  %plot(plotAxes,tser,rawData,'g*');
plot(plotAxes,t,gSlow,'y'); plot(plotAxes,t,gFast,'r');hold (plotAxes,'off');
%************CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC**************************************
%Store L R and K valves for Composite [C] plots
Exp(expN).ll(traceN)= l; Exp(expN).rr(traceN)= r; Exp(expN).kk(traceN)= K;
if RFcmpGFlg==0
Exp(expN).lstd(traceN)= Exp(expN).Dexp(DexpN).RFcmpL(RFnum).dm(inDM).std;
Exp(expN).kstd(traceN)= Exp(expN).Dexp(DexpN).RFcmpK(RFnum).dm(inDM).std;
Exp(expN).rstd(traceN)= Exp(expN).Dexp(DexpN).RFcmpr(RFnum).dm(inDM).std;

for dm=1:length(Exp(expN).Dexp(DexpN).DM.drug)
Exp(expN).Trace(traceN).Dexp(DexpN).DM(dm).UsrLvals= {Exp(expN).Dexp(DexpN).RFcmpL(RFnum).dm(dm).Lvals}; 
Exp(expN).Trace(traceN).Dexp(DexpN).DM(dm).UsrKvals= {Exp(expN).Dexp(DexpN).RFcmpK(RFnum).dm(dm).Kvals};
Exp(expN).Trace(traceN).Dexp(DexpN).DM(dm).Usrrvals= {Exp(expN).Dexp(DexpN).RFcmpr(RFnum).dm(dm).rvals};
end

Exp(expN).Trace(traceN).dmSel= inDM;
Exp(expN).Trace(traceN).DexpN= DexpN;
Exp(expN).Trace(traceN).UsrGLB= selGnOrf;   


elseif RFcmpGFlg==1
Exp(expN).lstd(traceN)= Exp(expN).Dexp(DexpN).RFcmpGL.dm(inDM).std;
Exp(expN).kstd(traceN)= Exp(expN).Dexp(DexpN).RFcmpGK.dm(inDM).std;
Exp(expN).rstd(traceN)= Exp(expN).Dexp(DexpN).RFcmpGr.dm(inDM).std;

if strcmp(Exp(expN).DexpType,'chrono')
for nn=1:length(Exp(expN).Dexp)  %replaced dmSel with inDM for 'chrono' and RFcmpGFlg
Exp(expN).Trace(traceN).Dexp(nn).DM(inDM).UsrLvals= Exp(expN).Dexp(nn).RFcmpGL.dm(inDM).Lvals;
Exp(expN).Trace(traceN).Dexp(nn).DM(inDM).UsrKvals= Exp(expN).Dexp(nn).RFcmpGK.dm(inDM).Kvals;
Exp(expN).Trace(traceN).Dexp(nn).DM(inDM).Usrrvals= Exp(expN).Dexp(nn).RFcmpGr.dm(inDM).rvals;
end
else
for dm=1:length(Exp(expN).Dexp(DexpN).DM.drug)
Exp(expN).Trace(traceN).Dexp(DexpN).DM(dm).UsrLvals= Exp(expN).Dexp(DexpN).RFcmpGL.dm(dm).Lvals;
Exp(expN).Trace(traceN).Dexp(DexpN).DM(dm).UsrKvals= Exp(expN).Dexp(DexpN).RFcmpGK.dm(dm).Kvals;
Exp(expN).Trace(traceN).Dexp(DexpN).DM(dm).Usrrvals= Exp(expN).Dexp(DexpN).RFcmpGr.dm(dm).rvals;
end
end  

Exp(expN).Trace(traceN).dmSel= inDM;
Exp(expN).Trace(traceN).DexpN= DexpN;
Exp(expN).Trace(traceN).UsrGLB= selGnOrf;   

end

Exp(expN).lslow(traceN)= lslow; Exp(expN).lfast(traceN)= lfast; 
Exp(expN).lKl(traceN)= Kl; Exp(expN).Ku(traceN)= Ku; 
Exp(expN).lrl(traceN)= rl; Exp(expN).ru(traceN)= ru; 
%************************************************************************
try for i=1:length(Exp(zoneSel).hOL(:)),set(Exp(zoneSel).hOL(i),'color',[0 0 1]); end,  catch; end                    
Exp(zoneSel).hOL(traceN)=plot(OLaxes,t,g);hold on;
set(Exp(zoneSel).hOL(traceN),'color',[1 0 0]) 
%Exp(zoneSel).hOLb(traceN)=plot(OLaxes,tser,rawData,'g*'); %No Raw Data, Ref Composite 17_1009   
%catch  
 %   catchissue='Ln68 EZlstBoxCmpExt'
%end  %trycatch

%Get the DM agar description
if expN==1,DMstr=char(get(handles.DM1,'string'));end
if expN==2,DMstr=char(get(handles.DM2,'string'));end
if expN==3,DMstr=char(get(handles.DM3,'string'));end

if isequal(selGnOrf{1}(1:3),'RF1')|| isequal(selGnOrf{1}(1:3),'RF2')|| RFcmpGFlg==1
   gene= {selGnOrf{1}(1:p2)};    
   geneOrfstr= gene;
   grfgenestr= gene;
else
  gene=MP(1,LBmp).genename{1,1}(indx); orf=MP(1,LBmp).orf{1,1}(indx);
  geneOrfstr= strcat(gene,'_',orf,'_','m',num2str(LBmp),'r',num2str(LBr),'c',num2str(LBc),'_',tPtStr);
  grfgenestr= strcat(gene,'_',orf,'_','m',num2str(LBmp),'r',num2str(LBr),'c',num2str(LBc));
end
%spec=MP(1,LBmp).specifics{1,1}(indx); %orfrep=MP(1,plateNum).orfRep{1,1}(indx);
%tPtStr=strcat('T=', num2str(scan(1,plateNum).plate(1).t0Series(tPtSel)));
graphStr=strcat(grfgenestr,'_','L=',Lstr,'_','r=',rstr,'_','K=',Kstr);
spotDescrip=strcat(graphStr,'->',DMstr);

xp=char(Exp(zoneSel).Dexp(DexpN).resDir);
if ispc,
    slashPos=strfind(char(Exp(zoneSel).Dexp(DexpN).resDir),'\');
else
    slashPos=strfind(char(Exp(zoneSel).Dexp(DexpN).resDir),'/');
end
    
startPos=slashPos(length(slashPos)-1) +1;
endPos=slashPos(length(slashPos)) -1;
expStr= {xp(startPos:endPos)}

Exp(zoneSel).hOLname(traceN)= spotDescrip;  %graphStr;  %ghandles.Exp(zoneSel).hOLname(traceN)= graphStr;
Exp(zoneSel).hOLexpNm(traceN)= expStr;  %ghandles.Exp(expN).hOLexpNm(traceN)= expStr;
Exp(zoneSel).hOLresDir(traceN)= {Exp(zoneSel).Dexp(DexpN).resDir};
%Exp(zoneSel).hOLplateNum(traceN)= plateNum; 

%traceData= vertcat(get(Exp(OLay).hOL(traceN),'XData'),get(ghandles.Exp(OLay).hOL(traceN),'YData'));  

if zoneSel==1,set(ghandles.GeneOrfLoc1,'string',geneOrfstr);end  % Displays the value.
if zoneSel==2,set(ghandles.GeneOrfLoc2,'string',geneOrfstr);end
if zoneSel==3,set(ghandles.GeneOrfLoc3,'string',geneOrfstr);end
if zoneSel==1,set(ghandles.graphStrLoc1,'string',spotDescrip);end  %graphStr);end % Displays the value.
if zoneSel==2,set(ghandles.graphStrLoc2,'string',spotDescrip);end  %graphStr);end    
if zoneSel==3,set(ghandles.graphStrLoc3,'string',spotDescrip);end  %graphStr);end
%catch
    %catchissue='Ln33 EZlstBoxCmpExt'
     %   msg='Error'
%end % trycatch zoneSel<4  datatip selection from Image (not from an OverLay Plot)
%**************Write Spot and Exp Info to OLay title areas****************************************************************************

    if zoneSel==1,  %&& get(ghandles.rotPB1,'value')~=1
        if length(char(Exp(zoneSel).hOLname(traceN)))>40,set(ghandles.OLay1,'FontSize',8);end
        set(ghandles.OLay1,'string', Exp(zoneSel).hOLname(traceN)); 
        if length(char(Exp(zoneSel).hOLexpNm(traceN)))>40,set(ghandles.OLexp1,'FontSize',8);end
        set(ghandles.OLexp1,'string',Exp(zoneSel).hOLexpNm(traceN));
    end
    if zoneSel==2 %&& get(ghandles.rotPB2,'value') ~=1
        if length(char(Exp(zoneSel).hOLname(traceN)))>40,set(ghandles.OLay2,'FontSize',8);end
        set(ghandles.OLay2,'string', Exp(zoneSel).hOLname(traceN)); 
        if length(char(Exp(zoneSel).hOLexpNm(traceN)))>40,set(ghandles.OLexp2,'FontSize',8);end
        set(ghandles.OLexp2,'string',Exp(zoneSel).hOLexpNm(traceN));
    end
    if zoneSel==3 %&& get(ghandles.rotPB3,'value') ~=1 
        if length(char(Exp(zoneSel).hOLname(traceN)))>40,set(ghandles.OLay3,'FontSize',8);end
        set(ghandles.OLay3,'string', Exp(OLay).hOLname(traceN)); 
        if length(char(Exp(zoneSel).hOLexpNm(traceN)))>40,set(ghandles.OLexp3,'FontSize',8);end
        set(ghandles.OLexp3,'string',Exp(OLay).hOLexpNm(traceN));
    end
    

end %if sgdInfoOnly==1         



%***********************GraphicDestinationPerturbationComparison**15_0821************************************************
lstBoxCmpFlg=1;
EZdatatip=0; %**
if strcmp((Exp(expN).DexpType),'single')||...
   strcmp((Exp(expN).DexpType),'multi') 
    %****************
    EZdestComp   %**
    %****************
elseif strcmp((Exp(expN).DexpType),'chrono')
    %EZdatatip=2; %**
    %************
    EZmDayTrend %**
    %************
end
%***********************************************************************************************************************