%EZlstBoxExt.m
%Calls either EZdestComp.m 
%or if 'Chrono'  EZmDayPlotUCmp.m and  EZmDayTrend.m and if ghandles.CompositeTog_,EZmDayPlotUcomposite
%or by EZviewGui.m (listboxGnOrf_Callback)

%Replace get(ghandles.CompositeTog1,'value')==1 ... with get(handles....
if expN==1 && get(handles.CompositeTog1,'value')==1 ||... 
   expN==2 && get(handles.CompositeTog2,'value')==1 ||...     
   expN==3 && get(handles.CompositeTog3,'value')==1 
  CompositeTrendFlg=1; else CompositeTrendFlg=0;
end


Exp(expN).cLmdEven= 0;  %Added for Cummulative Median and Mean 'C' plot
RFDMflg=0;
      if zoneSel==1,DexpN= (get(handles.DN1,'value')); end
      if zoneSel==2,DexpN= (get(handles.DN2,'value')); end
      if zoneSel==3,DexpN= (get(handles.DN3,'value')); end
try
p1=cell2mat(strfind(selGnOrf,'('));
p2=  cell2mat(strfind(selGnOrf,')'));
dmNum= str2num(selGnOrf{1}(p1+1:p2-1));
inDM= selGnOrf{1}(p1+1:p2-1);
if (~isempty(dmNum)&& isnumeric(dmNum)),RFDMflg=1; end
catch
end
if RFDMflg, Exp(zoneSel).Dexp(DexpN).pertSel=dmNum;  end  %pertSel=pert;

inMP=selGnOrf{1}((LBdlims{:,:}(1))+1:(LBdlims{:,:}(2))-1)
%LBmp=str2double(inMP);
sgdInfoOnly=get(handles.InfoToggle,'value');
if sgdInfoOnly==1
    %***************
    EZviewInfoBox %*
    %***************
else     %  Runs to end of EZlstBoxExt.m within this else condition
if zoneSel==1
Max=floor(get(handles.MPsldr1,'max'));
Min=floor(get(handles.MPsldr1,'min'));
if str2num(inMP) >= Min && str2num(inMP) <= Max
set(handles.MPed1,'string',inMP)
set(handles.MPsldr1,'value',str2double(inMP));
else
 if str2num(inMP) >= Max, set(handles.MPsldr1,'value',Max); set(handles.MPed1,'string',num2str(Max));end
 if str2num(inMP) <= Min, set(handles.MPsldr1,'value',Min),set(handles.MPed1,'string',num2str(Min));end
end 
end
if zoneSel==2
Max=floor(get(handles.MPsldr2,'max'));
Min=floor(get(handles.MPsldr2,'min'));
if str2num(inMP) >= Min && str2num(inMP) <= Max
set(handles.MPed2,'string',inMP)
set(handles.MPsldr2,'value',str2double(inMP));
else
 if str2num(inMP) >= Max, set(handles.MPsldr2,'value',Max); set(handles.MPed2,'string',num2str(Max));end
 if str2num(inMP) <= Min, set(handles.MPsldr2,'value',Min),set(handles.MPed2,'string',num2str(Min));end
end
end
if zoneSel==3
Max=floor(get(handles.MPsldr3,'max'));
Min=floor(get(handles.MPsldr3,'min'));
if str2num(inMP) >= Min && str2num(inMP) <= Max
set(handles.MPed3,'string',inMP)
set(handles.MPsldr3,'value',str2double(inMP));
else
 if str2num(inMP) >= Max, set(handles.MPsldr3,'value',Max); set(handles.MPed3,'string',num2str(Max));end
 if str2num(inMP) <= Min, set(handles.MPsldr3,'value',Min),set(handles.MPed3,'string',num2str(Min));end
end
end

if RFDMflg, 
if zoneSel==1
Max=floor(get(handles.DMsldr1,'max'));
Min=floor(get(handles.DMsldr1,'min'));
if str2num(inDM) >= Min && str2num(inDM) <= Max
set(handles.DMed1,'string',inDM)
set(handles.DMsldr1,'value',str2double(inDM));
else
 if str2num(inDM) >= Max, set(handles.DMsldr1,'value',Max); set(handles.DMed1,'string',num2str(Max));end
 if str2num(inDM) <= Min, set(handles.DMsldr1,'value',Min),set(handles.DMed1,'string',num2str(Min));end
end 
end
if zoneSel==2
Max=floor(get(handles.DMsldr2,'max'));
Min=floor(get(handles.DMsldr2,'min'));
if str2num(inDM) >= Min && str2num(inDM) <= Max
set(handles.DMed2,'string',inDM)
set(handles.DMsldr2,'value',str2double(inDM));
else
 if str2num(inDM) >= Max, set(handles.DMsldr2,'value',Max); set(handles.DMed2,'string',num2str(Max));end
 if str2num(inDM) <= Min, set(handles.DMsldr2,'value',Min),set(handles.DMed2,'string',num2str(Min));end
end
end
if zoneSel==3
Max=floor(get(handles.DMsldr3,'max'));
Min=floor(get(handles.DMsldr3,'min'));
if str2num(inDM) >= Min && str2num(inDM) <= Max
set(handles.DMed3,'string',inDM)
set(handles.DMsldr3,'value',str2double(inDM));
else
 if str2num(inDM) >= Max, set(handles.DMsldr3,'value',Max); set(handles.DMed3,'string',num2str(Max));end
 if str2num(inDM) <= Min, set(handles.DMsldr3,'value',Min),set(handles.DMed3,'string',num2str(Min));end
end
end
end
%**************************************************************************
EZVimDisplay %**
%**************************************************************************
%17_111 If CompositeTog_ set, Routine called to find all gene replicates and produce composite values 
if CompositeTrendFlg==1
if strcmp(Exp(expN).DexpType, 'chrono')
    %***********************
    EZmDayPlotUcmp %*
    %***********************
else
    %***********************
    EZplotUcmp %*
    %***********************
end

%*******************************************************************
%***********PLOT Selected Gene/Orf Spot ******************************************
% if  non-Composite ("normal") then - ...
elseif CompositeTrendFlg~=1    
            destPerMP= Exp(zoneSel).Dexp(DexpN).destPerMP;  %length(gS.DM1.drug); 
            pertSel=Exp(zoneSel).Dexp(DexpN).pertSel;  %floor(get(handles.DMsldr1,'value'));
            plateNum=(LBmp-1)*destPerMP + pertSel;
            indx=((LBr-1)*24) +LBc
            MP=Exp(zoneSel).Dexp(DexpN).MP;
            
try                
K=scan(1,plateNum).plate(1).CFout(indx,3); Ks= num2str(K);
r=scan(1,plateNum).plate(1).CFout(indx,4); rs= num2str(r);
l=scan(1,plateNum).plate(1).CFout(indx,5); Ls= num2str(l);
try Kstr=Ks(1:5); catch, Kstr = Ks(1:length(Ks)); end
try rstr=rs(1:5); catch, rstr = rs(1:length(rs)); end
try Lstr=Ls(1:5); catch, Lstr = Ls(1:length(Ls)); end

Kl=scan(1,plateNum).plate(1).CFout(indx,7);
Ku=scan(1,plateNum).plate(1).CFout(indx,8);
rl=scan(1,plateNum).plate(1).CFout(indx,9);
ru=scan(1,plateNum).plate(1).CFout(indx,10);
lfast=scan(1,plateNum).plate(1).CFout(indx,11);
lslow=scan(1,plateNum).plate(1).CFout(indx,12);

t=1:200;
clear g;

try
g =  K ./ (1 +  exp(-r.* (t - l )));
gSlow= Kl ./ (1 +  exp(-rl.* (t - lslow )));
gFast= Ku ./ (1 +  exp(-ru.* (t - lfast )));
if K==0||r==0||l==0, g(1:200)=1;gSlow(1:200)=1;gFast(1:200)=1;end

tser=(scan(1,plateNum).plate(1).t0Series(:));
rawData= scan(1,plateNum).plate(1).intens(indx,:)/scan(1,plateNum).plate(1).Ag(indx);

            if zoneSel==1, plotAxes=ghandles.Paxes1; OLaxes=ghandles.OLaxes1;
                Dlaxes=ghandles.Dlaxes1;Dkaxes=ghandles.Dkaxes1;Draxes=ghandles.Draxes1;
            Exp(1).traceN=Exp(1).traceN+1;
            traceN=Exp(1).traceN;
            end
            if zoneSel==2, plotAxes=ghandles.Paxes2; OLaxes=ghandles.OLaxes2;Daxes=ghandles.Daxes2;
                Dlaxes=ghandles.Dlaxes2;Dkaxes=ghandles.Dkaxes2;Draxes=ghandles.Draxes2;
            Exp(2).traceN=Exp(2).traceN+1;
            traceN=Exp(2).traceN;
            end
            if zoneSel==3, plotAxes=ghandles.Paxes3; OLaxes=ghandles.OLaxes3;Daxes=ghandles.Daxes3;
                Dlaxes=ghandles.Dlaxes3;Dkaxes=ghandles.Dkaxes3;Draxes=ghandles.Draxes3;
            Exp(3).traceN=Exp(3).traceN+1;
            traceN=Exp(3).traceN;
            end
plot(plotAxes,t,g);hold (plotAxes,'on');plot(plotAxes,tser,rawData,'g*');
plot(plotAxes,t,gSlow,'y');plot(plotAxes,t,gFast,'r');hold (plotAxes,'off');
%************CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC**************************************
%Store L R and K valves for Composite [C] plots
Exp(expN).ll(traceN)= l; Exp(expN).rr(traceN)= r; Exp(expN).kk(traceN)= K;
Exp(expN).lslow(traceN)= lslow; Exp(expN).lfast(traceN)= lfast;                       
%************************************************************************
try for i=1:length(Exp(zoneSel).hOL(:)),set(Exp(zoneSel).hOL(i),'color',[0 0 1]); end,  catch; end                    
Exp(zoneSel).hOL(traceN)=plot(OLaxes,t,g);hold on;
set(Exp(zoneSel).hOL(traceN),'color',[1 0 0]) 
Exp(zoneSel).hOLb(traceN)=plot(OLaxes,tser,rawData,'g*');   
catch  
    catchissue='Ln100 EZlstBoxExt'
end  %trycatch

%Get the DM agar description
if expN==1,DMstr=char(get(handles.DM1,'string'));end
if expN==2,DMstr=char(get(handles.DM2,'string'));end
if expN==3,DMstr=char(get(handles.DM3,'string'));end

if isequal(selGnOrf{1}(1:3),'RF1')
   gene= {selGnOrf{1}(1:p2)};    
   geneOrfstr= strcat(gene,'_','m',num2str(LBmp),'r',num2str(LBr),'c',num2str(LBc),'_',tPtStr);
   grfgenestr= strcat(gene,'_','m',num2str(LBmp),'r',num2str(LBr),'c',num2str(LBc));
else
  gene=MP(1,LBmp).genename{1,1}(indx); orf=MP(1,LBmp).orf{1,1}(indx);
  geneOrfstr= strcat(gene,'_',orf,'_','m',num2str(LBmp),'r',num2str(LBr),'c',num2str(LBc),'_',tPtStr);
  grfgenestr= strcat(gene,'_',orf,'_','m',num2str(LBmp),'r',num2str(LBr),'c',num2str(LBc));
end
spec=MP(1,LBmp).specifics{1,1}(indx); %orfrep=MP(1,plateNum).orfRep{1,1}(indx);
tPtStr=strcat('T=', num2str(scan(1,plateNum).plate(1).t0Series(tPtSel)));
graphStr=strcat(grfgenestr,'_','L=',Lstr,'_','r=',rstr,'_','K=',Kstr);
spotDescrip=strcat(graphStr,'->',DMstr);

xp=char(Exp(zoneSel).Dexp(DexpN).resDir);
if ispc,
    slashPos=strfind(char(Exp(zoneSel).Dexp(DexpN).resDir),'\');
else
    slashPos=strfind(char(Exp(zoneSel).Dexp(DexpN).resDir),'/');
end
    
startPos=slashPos(length(slashPos)-1) +1;
endPos=slashPos(length(slashPos)) -1
expStr= {xp(startPos:endPos)}

Exp(zoneSel).hOLname(traceN)= spotDescrip;  %graphStr;  %ghandles.Exp(zoneSel).hOLname(traceN)= graphStr;
Exp(zoneSel).hOLexpNm(traceN)= expStr;  %ghandles.Exp(expN).hOLexpNm(traceN)= expStr;
Exp(zoneSel).hOLresDir(traceN)= {Exp(zoneSel).Dexp(DexpN).resDir};
Exp(zoneSel).hOLplateNum(traceN)= plateNum; 

%traceData= vertcat(get(Exp(OLay).hOL(traceN),'XData'),get(ghandles.Exp(OLay).hOL(traceN),'YData'));  

if zoneSel==1,set(ghandles.GeneOrfLoc1,'string',geneOrfstr);end  % Displays the value.
if zoneSel==2,set(ghandles.GeneOrfLoc2,'string',geneOrfstr);end
if zoneSel==3,set(ghandles.GeneOrfLoc3,'string',geneOrfstr);end
if zoneSel==1,set(ghandles.graphStrLoc1,'string',spotDescrip);end  %graphStr);end % Displays the value.
if zoneSel==2,set(ghandles.graphStrLoc2,'string',spotDescrip);end  %graphStr);end    
if zoneSel==3,set(ghandles.graphStrLoc3,'string',spotDescrip);end  %graphStr);end
catch
    catchissue='Ln141 EZlstBoxExt'
        msg='Error'
end % trycatch zoneSel<4  datatip selection from Image (not from an OverLay Plot)

end  %if get(ghandles.CompositeTog1,'value')==1  


%**************Write Spot and Exp Info to OLay title areas****************************************************************************

    if zoneSel==1,  %&& get(ghandles.rotPB1,'value')~=1
        if length(char(Exp(zoneSel).hOLname(traceN)))>40,set(ghandles.OLay1,'FontSize',8);end
        set(ghandles.OLay1,'string', Exp(zoneSel).hOLname(traceN)); 
        if length(char(Exp(zoneSel).hOLexpNm(traceN)))>40,set(ghandles.OLexp1,'FontSize',8);end
        set(ghandles.OLexp1,'string',Exp(zoneSel).hOLexpNm(traceN));
    end
    if zoneSel==2 %&& get(ghandles.rotPB2,'value') ~=1
        if length(char(Exp(zoneSel).hOLname(traceN)))>40,set(ghandles.OLay2,'FontSize',8);end
        set(ghandles.OLay2,'string', Exp(zoneSel).hOLname(traceN)); 
        if length(char(Exp(zoneSel).hOLexpNm(traceN)))>40,set(ghandles.OLexp2,'FontSize',8);end
        set(ghandles.OLexp2,'string',Exp(zoneSel).hOLexpNm(traceN));
    end
    if zoneSel==3 %&& get(ghandles.rotPB3,'value') ~=1 
        if length(char(Exp(zoneSel).hOLname(traceN)))>40,set(ghandles.OLay3,'FontSize',8);end
        set(ghandles.OLay3,'string', Exp(OLay).hOLname(traceN)); 
        if length(char(Exp(zoneSel).hOLexpNm(traceN)))>40,set(ghandles.OLexp3,'FontSize',8);end
        set(ghandles.OLexp3,'string',Exp(OLay).hOLexpNm(traceN));
    end

%*****************Highlight gene/orf select Spot on Image*********
tPtSel=Exp(zoneSel).Dexp(DexpN).tPtSel;
Rim= 16-(LBr-1); Cim =LBc;
spotCoor=Exp(zoneSel).Dexp(DexpN).FexpScanSpots{1,plateNum}{Cim,Rim,tPtSel};
            if zoneSel==1, expAxes=ghandles.Iaxes1;end
            if zoneSel==2, expAxes=ghandles.Iaxes2;end
            if zoneSel==3, expAxes=ghandles.Iaxes3;end
            %axes(ghandles.Iaxes1)
            plot(expAxes,(spotCoor(2)+24),(spotCoor(1)+24),'.y')
            
            
%***********************GraphicDestinationPerturbationComparison**15_0821************************************************
EZdatatip=0; %**
if strcmp((Exp(expN).DexpType),'single')||...
   strcmp((Exp(expN).DexpType),'multi')     
    %****************
    EZdestComp   %**
    %****************
elseif strcmp((Exp(expN).DexpType),'chrono')
    %************
    EZmDayTrend %**
    %************
end
%***********************************************************************************************************************
%*********************HeatMap Text Field*********************************
try
ll=num2str(l);
if length(ll)>5,htl= ll(1:5);else htl=ll;end
catch
    htl=' ';
end
try   
    n1= num2str(Exp(expN).Dexp(DexpN).HtMpIntN1(indx));
    if length(n1)>5,N1= n1(1:5);else N1=n1; end
    htN1=strcat('_N1=',N1); 
catch, 
    htN1=' ';
end
try
htmapStr=strcat('L= ',htl, htN1)
if expN==1,set(ghandles.HtMapVals1,'string',htmapStr);end
if expN==2,set(ghandles.HtMapVals2,'string',htmapStr);end
if expN==3,set(ghandles.HtMapVals3,'string',htmapStr);end
catch
end


end %if sgdInfoOnly==1