%EZmultiExLoad %Calls to EZVimDisplay (ln 185) EZmultiGeneRFsLst (ln213) EZdiagRFsSheet(ln218) global Exp global zonePB global Expaa global Expbb global exDlst global exFolder % Load .mat file expN=zonePB; % added to accomodate AppDesigner limitations 230821 Exp(expN).UgeneCnt=0; Exp(expN).DexpLength= size(matFile,2); DexpLength= size(matFile,2); for n=1:Exp(expN).DexpLength %size(matFile,2) if expN==1 orfLstSel=get(handles.GeneOrfTog,'value'); end if expN==2 orfLstSel=get(handles.GeneOrfTog,'value'); end if expN==3 orfLstSel=get(handles.GeneOrfTog,'value'); end Exp(expN).Dexp(n).srtGnLst={('CheckMP/MPDMfile')}; Exp(expN).Dexp(n).srtOrfLst={('CheckMP/MPDMfile')}; set(handles.listboxGnOrf,'value',1) %Fix accomodation for bug in App Designer .. .wlapp converter 230918 set(handles.listboxGnOrf,'string',cellstr([{'Failed To Load'}; {' '}])); %try ExpOutmat= matFile(n) %fullfile(scansDir,openExpfile); load(char(ExpOutmat)); %cd(scansDir) %cd ..; %resDir=pwd; Exp(expN).Dexp(n).resDir= cell2mat(resDir(n)); cd(Exp(expN).Dexp(n).resDir) cd ..; ExpPath=pwd; Exp(expN).Dexp(n).ExpFoldr= ExpPath; cd(w) %Experiment LOADs load(fullfile(Exp(expN).Dexp(n).ExpFoldr,'MasterPlateFiles','MPDMmat.mat')) load(fullfile(Exp(expN).Dexp(n).resDir,'Fotos','Coordinates')) load(fullfile(Exp(expN).Dexp(n).resDir,'Fotos','anlZones')) load(fullfile(Exp(expN).Dexp(n).resDir,'Fotos','BGatTpts')) load(fullfile(Exp(expN).Dexp(n).resDir,'PTmats','NImParameters')) %Backup for cond. sothat failure to load is recovered back prev. ExpJob data %test in temp Exp(expN).Dexp(n).temp.DM=DM; Exp(expN).Dexp(n).temp.MP=MP; Exp(expN).Dexp(n).temp.scan=scan; Exp(expN).Dexp(n).temp.FexpScanSpots=FexpScanSpots; Exp(expN).Dexp(n).temp.FexpScanBMtp=FexpScanBMtp; Exp(expN).Dexp(n).temp.anlZoneRefs=anlZoneRefs; Exp(expN).Dexp(n).temp.ImParMat=ImParMat; Exp(expN).Dexp(n).DM=Exp(expN).Dexp(n).temp.DM; Exp(expN).Dexp(n).MP= Exp(expN).Dexp(n).temp.MP; Exp(expN).Dexp(n).scan= Exp(expN).Dexp(n).temp.scan; Exp(expN).Dexp(n).FexpScanSpots= Exp(expN).Dexp(n).temp.FexpScanSpots; Exp(expN).Dexp(n).FexpScanBMtp= Exp(expN).Dexp(n).temp.FexpScanBMtp; Exp(expN).Dexp(n).anlZoneRefs=Exp(expN).Dexp(n).temp.anlZoneRefs; Exp(expN).Dexp(n).ImParMat=Exp(expN).Dexp(n).temp.ImParMat; Exp(expN).Dexp((Exp(expN).DexpLength+1):end)= []; Exp(expN).Dexp(n).temp= []; end %for n=1:size(matFile,2) %Load First new ExpJOb***************** if expN==1, tPtsSize= size(Exp(expN).Dexp(1).FexpScanBMtp{1,1},(3)); %size(FexpScanBMtp{1,1},3); set(handles.MPsldr1,'max',MPnum); %length(MP) set(handles.DMsldr1,'max',length(DM.drug)); set(handles.Tptsldr1,'max',tPtsSize); %MPnum=length(Exp(expN).Dexp(1).MP); set(handles.MPsldr1,'min',1,'max',MPnum) DMnum= length(Exp(expN).Dexp(1).DM.drug); set(handles.DMsldr1,'min',1,'max',DMnum) tPtsSize= size(Exp(expN).Dexp(1).FexpScanBMtp{1,1},(3)); set(handles.Tptsldr1,'min',1,'max',tPtsSize) set(handles.MPsldr1,'value',1) set(handles.DMsldr1,'value',1) set(handles.Tptsldr1,'value',1) set(handles.MPed1,'string','1') set(handles.DMed1,'string','1') set(handles.Tpted1,'string','1') set(handles.MPsldr1,'SliderStep',[1/MPnum 1/MPnum]); %[1/length(MP) 1/length(MP)]) set(handles.DMsldr1,'SliderStep',[1/length(DM.drug) 1/length(DM.drug)]); set(handles.Tptsldr1,'SliderStep',[1/tPtsSize 1/tPtsSize]); set(handles.DN1,'value',1) set(handles.DN1,'string',1) end if expN==2, tPtsSize= size(Exp(expN).Dexp(1).FexpScanBMtp{1,1},(3)); %size(FexpScanBMtp{1,1},3); set(handles.MPsldr2,'max',MPnum); set(handles.DMsldr2,'max',length(DM.drug)); set(handles.Tptsldr2,'max',tPtsSize); %MPnum=length(Exp(expN).Dexp(1).MP); set(handles.MPsldr2,'min',1,'max',MPnum) %length(MP)) DMnum= length(Exp(expN).Dexp(n).DM.drug); set(handles.DMsldr2,'min',1,'max',DMnum) tPtsSize= size(Exp(expN).Dexp(1).FexpScanBMtp{1,1},(3)); set(handles.Tptsldr2,'min',1,'max',tPtsSize) set(handles.MPsldr2,'value',1) set(handles.DMsldr2,'value',1) set(handles.Tptsldr2,'value',1) set(handles.MPed2,'string','1') set(handles.DMed2,'string','1') set(handles.Tpted2,'string','1') set(handles.MPsldr2,'SliderStep',[1/MPnum 1/MPnum]); %1/length(MP) 1/length(MP)]) set(handles.DMsldr2,'SliderStep',[1/length(DM.drug) 1/length(DM.drug)]); set(handles.Tptsldr2,'SliderStep',[1/tPtsSize 1/tPtsSize]); set(handles.DN2,'value',1) set(handles.DN2,'string',1) end if expN==3, %Exp(3).traceN=0; tPtsSize= size(Exp(expN).Dexp(1).FexpScanBMtp{1,1},(3)); %size(FexpScanBMtp{1,1},3); set(handles.MPsldr3,'max',MPnum); set(handles.DMsldr3,'max',length(DM.drug)); set(handles.Tptsldr3,'max',tPtsSize); %MPnum=length(Exp(expN).Dexp(1).MP); set(handles.MPsldr3,'min',1,'max',MPnum) DMnum= length(Exp(expN).Dexp(1).DM.drug); set(handles.DMsldr3,'min',1,'max',DMnum) tPtsSize=size(Exp(expN).Dexp(1).FexpScanBMtp{1,1},(3)); set(handles.Tptsldr3,'min',1,'max',tPtsSize) set(handles.MPsldr3,'value',1) set(handles.DMsldr3,'value',1) set(handles.Tptsldr3,'value',1) set(handles.MPed3,'string','1') set(handles.DMed3,'string','1') set(handles.Tpted3,'string','1') set(handles.MPsldr3,'SliderStep',[1/MPnum 1/MPnum]); %1/length(MP) 1/length(MP)]) set(handles.DMsldr3,'SliderStep',[1/length(DM.drug) 1/length(DM.drug)]); set(handles.Tptsldr3,'SliderStep',[1/tPtsSize 1/tPtsSize]); set(handles.DN3,'value',1) set(handles.DN3,'string',1) end if expN==1,set(handles.GeneOrfLoc1,'string',{''}); set(handles.graphStrLoc1,'string',{''}); cla(handles.Paxes1) end if expN==2,set(handles.GeneOrfLoc2,'string',{''}); set(handles.graphStrLoc2,'string',{''}); cla(handles.Paxes2) end if expN==3,set(handles.GeneOrfLoc3,'string',{''}); set(handles.graphStrLoc3,'string',{''}) cla(handles.Paxes3) end Exp(expN).Dexp(1).srtGnLst={('CheckMP/MPDMfile')}; Exp(expN).Dexp(1).srtOrfLst={('CheckMP/MPDMfile')}; set(handles.listboxGnOrf,'value',1) %Fix accomodation for bug in App Designer .. .wlapp converter 230918 set(handles.listboxGnOrf,'string',Exp(expN).Dexp(1).srtGnLst) set(handles.listboxGnOrf,'string',Exp(expN).Dexp(1).srtOrfLst) %-------------------------------------------------------------------------- %********************* EZVimDisplay %* %********************* usrRefFg=0; prompt={'Enter GeneName to use as Reference:',... 'Enter Specifics Term if used to futher specify Reference '} dlg_title='User Reference Input'; num_lines=1; def={'RF1','None'}; answer=inputdlg(prompt,dlg_title,num_lines,def); if iscell(answer(1)) rfGene= cell2mat(answer(1)); else rfGene= answer(1); end if ~strcmpi(rfGene,'RF1')|| ~strcmpi(rfGene,'RF2'), usrRefFg=1; end rfSpec= answer(2); %if strcmpi(answer(2),'None'), rfSpec= ''; end rfGnSp= strcat(rfGene,rfSpec); if strcmpi(rfSpec,'None'), rfGnSp= {strcat(rfGene,'-')}; end %Added 17-1023 For User Addition of Gene Composites to ListBox Expaa{expN,1}= []; Expbb{expN,1}= []; for n=1:size(matFile,2) %********************************************************************* try EZmultiGeneRFsLst %** catch msg='EZmultiGeneRFLst failed possibly Too Few non-zero Median spots' end %********************************************************* EZdiagRFsSheet %** %******************** Exp(expN).Dexp(n).RFrnames=rnames; Exp(expN).Dexp(n).RFdata= data; %********************************************************* RFconfig=0; if sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmean'))&&... ~isempty(Exp(expN).Dexp(n).RFmean)&&... sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmeanG'))&&... isempty(Exp(expN).Dexp(n).RFmeanG) RFconfig=1; end if sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmean'))==0 ||... isempty(Exp(expN).Dexp(n).RFmean)&&... sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmeanG'))&&... ~isempty(Exp(expN).Dexp(n).RFmeanG) RFconfig=2; end if sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmean'))&&... ~isempty(Exp(expN).Dexp(n).RFmean)&&... sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmeanG'))&&... ~isempty(Exp(expN).Dexp(n).RFmeanG) RFconfig=3; end Exp(expN).RFconfig= RFconfig; Exp(expN).Dexp(n).RFconfig= RFconfig; %********************************************** try msgBadGeneName, catch, end try Exp(expN).Dexp(n).resetHtmpTg =5; %Exp(expN).resetHtmpTg =5; if RFconfig==0, RFconfigMsg= 'No RF1 references in this Experiment Job' Exp(expN).Dexp(n).resetHtmpTg =3; %Exp(expN).resetHtmpTg =3; end catch end %*************************** %********************************************************************* end %############################################################################### %********Auto select Zone and load listboxGnOrf data********** DexpN=1; zeroCLn= zeros(1,DMnum); Exp(expN).expLoadCnt= Exp(expN).expLoadCnt+1; expLdCnt= Exp(expN).expLoadCnt; if expN==1 %Adapted to accomodate AppDesigner 230821 set(handles.zonePB1,'value',1) set(handles.zonePB2,'value',0) set(handles.zonePB3,'value',0) set(handles.zonePB1,'BackgroundColor',[1.0 0.6 0.6]) set(handles.zonePB2,'BackgroundColor',[1.0 1.0 1.0]) set(handles.zonePB3,'BackgroundColor',[1.0 1.0 1.0]) orfLstSel=get(handles.GeneOrfTog,'value') if orfLstSel==1 set(handles.listboxGnOrf,'string',Exp(1).Dexp(1).srtOrfLst) else set(handles.listboxGnOrf,'string',Exp(1).Dexp(1).srtGnLst) end DNLaxes1= handles.DNLaxes1; Exp(1).hzeroCLn(expLdCnt)=plot(DNLaxes1,zeroCLn,1:DMnum,'y'); end if expN==2 %Adapted to accomodate AppDesigner 230821 set(handles.zonePB1,'value',0) set(handles.zonePB3,'value',0) set(handles.zonePB2,'value',1) set(handles.zonePB2,'BackgroundColor',[1.0 0.6 0.6]) set(handles.zonePB1,'BackgroundColor',[1.0 1.0 1.0]) set(handles.zonePB3,'BackgroundColor',[1.0 1.0 1.0]) orfLstSel= get(handles.GeneOrfTog,'value'); if orfLstSel==1 set(handles.listboxGnOrf,'string',Exp(2).Dexp(1).srtOrfLst) else set(handles.listboxGnOrf,'string',Exp(2).Dexp(1).srtGnLst) end DNLaxes2= handles.DNLaxes2; Exp(2).hzeroCLn(expLdCnt)=plot(DNLaxes2,zeroCLn,1:DMnum,'y'); end if expN==3 %Adapted to accomodate AppDesigner 230821 set(handles.zonePB1,'value',0) set(handles.zonePB2,'value',0) set(handles.zonePB3,'value',1) set(handles.zonePB3,'BackgroundColor',[1.0 0.6 0.6]); set(handles.zonePB1,'BackgroundColor',[1.0 1.0 1.0]); set(handles.zonePB2,'BackgroundColor',[1.0 1.0 1.0]); orfLstSel=get(handles.GeneOrfTog,'value'); if orfLstSel==1 set(handles.listboxGnOrf,'string',Exp(3).Dexp(1).srtOrfLst) else set(handles.listboxGnOrf,'string',Exp(3).Dexp(1).srtGnLst) end DNLaxes3= handles.DNLaxes3; Exp(3).hzeroCLn(expLdCnt)=plot(DNLaxes3,zeroCLn,1:DMnum,'y'); end if Exp(4).interacPBsel==0 %if interaction "raw" don't show a center line for i=1:Exp(expN).expLoadCnt, try set(Exp(expN).hzeroCLn(i),'visible','off'); catch catchissue='Ln521' i end end end %*************************** % HtMapTog 'string', 'Current user L/N' selection' Exp(expN).Dexp(DexpN).spotIndx= []; if expN==1, Exp(1).htmapPBsel=0; set(handles.HtMapTog1,'string','L') EZhtMap end if expN==2, Exp(2).htmapPBsel=0; set(handles.HtMapTog2,'string','L') EZhtMap end if expN==3, Exp(3).htmapPBsel=0; set(handles.HtMapTog3,'string','L') EZhtMap end htMapTogPBfg=0; %*******************************************************************