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2025-12-04 23:23:42 -05:00
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# see https://github.com/sigoden/aichat/blob/main/config.example.yaml
model: claude:claude-haiku-4-5-20251001
clients:
- type: claude
api_key: {{ ANTHROPIC_API_KEY }}

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dotfiles/common/.env.j2 Normal file
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OPENAI_API_KEY="{{ OPENAI_API_KEY }}"
ANTHROPIC_API_KEY="{{ ANTHROPIC_API_KEY }}"

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# This is Git's per-user configuration file.
[user]
email = bryanroessler@gmail.com
name = Bryan Roessler
[color]
ui = auto
[credential]
helper = cache
[init]
defaultBranch = main

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#!/usr/bin/env bash
# Nautilus script for creating one or more shared links
# Requires wl-clipboard and notify-send
ssh_server="bryanroessler.com"
ssh_files_path="/var/www/repos.bryanroessler.com/files"
www_files_path="https://repos.bryanroessler.com/files"
if [[ "$#" -lt 1 ]]; then
echo "You must provide at least one argument"
exit 1
fi
hash wl-copy &>/dev/null || { echo "Please install wl-copy"; exit 1; }
hash rsync &>/dev/null || { echo "Please install rsync"; exit 1; }
if [[ -v NAUTILUS_SCRIPT_SELECTED_URIS ]]; then
readarray -t files <<< "$NAUTILUS_SCRIPT_SELECTED_URIS"
for f in "${files[@]}"; do
f="${f#file://}"
f="${f//\%20/ }"
fixed_files+=("$f")
done
else
fixed_files=("$@")
fi
links_array=()
for f in "${fixed_files[@]}"; do
[[ "$f" == "" ]] && continue
fname="${f##*/}"
random64=$(tr -dc 'a-zA-Z0-9' < /dev/urandom | fold -w 64 | head -n 1)
nohup rsync -a "$f" "${ssh_server}:${ssh_files_path}/${random64}/" &
links_array+=("$www_files_path/${random64}/${fname// /%20}")
done
if [[ "${#links_array[@]}" == 1 ]]; then
printf '%s' "${links_array[@]}" | wl-copy
else
printf '%s\n' "${links_array[@]}" | wl-copy
fi
hash notify-send &>/dev/null &&
notify-send -t 3000 -i face-smile "share-link" "File(s) uploaded and link copied to clipboard"
exit 0

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{% for key in SSH_AUTHORIZED_KEYS %}
{{ key }}
{% endfor %}

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HashKnownHosts yes
AddressFamily inet
Host *
StrictHostKeyChecking no
Host uv.asc.edu
User uabbcr
ProxyJump roessler@hartmanlab.genetics.uab.edu
Host router
Hostname router.lan
User root
ServerAliveCountMax 10
ServerAliveInterval 120
Host home-router
Hostname home-router
User root
Host ax6000
Hostname ax6000.lan
User root
Host bryanroessler.com
Hostname 23.94.201.46
Host hartmanlab
Hostname hartmanlab.genetics.uab.edu
User roessler
Host workstation
Hostname workstation
Host laptop
Hostname laptop
Host vm-fedora42
Hostname vm-fedora42
Host vm-alma9
Hostname 192.168.122.235

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# Synchronize windows shortcut
unbind a
bind a set-window-option synchronize-panes
# Use | and - to split a window vertically and horizontally instead of " and % respoectively
unbind '"'
unbind %
bind | split-window -h -c "#{pane_current_path}"
bind - split-window -v -c "#{pane_current_path}"
# Automatically set window title
set-window-option -g automatic-rename on
set-option -g set-titles on
# Alias (Ctrl-b + k) to kill the current session
bind-key k kill-session
unbind r
bind r \
source-file ~/.tmux.conf \;\
display 'Reloaded tmux config'
# Set the history limit so we get lots of scrollback.
setw -g history-limit 50000000
# switch panes using Alt-arrow without prefix
bind -n M-Left select-pane -L
bind -n M-Right select-pane -R
bind -n M-Up select-pane -U
bind -n M-Down select-pane -D
# Enable mouse mode
set -g mouse on

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dotfiles/common/.vimrc Normal file
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" File: .vimrc
" Author: Jake Zimmerman <jake@zimmerman.io>
"
" How I configure Vim :P
"
" Gotta be first
set nocompatible
filetype off
set rtp+=~/.vim/bundle/Vundle.vim
call vundle#begin()
Plugin 'VundleVim/Vundle.vim'
" ----- Making Vim look good ------------------------------------------
Plugin 'altercation/vim-colors-solarized'
Plugin 'tomasr/molokai'
Plugin 'vim-airline/vim-airline'
Plugin 'vim-airline/vim-airline-themes'
" ----- Vim as a programmer's text editor -----------------------------
Plugin 'scrooloose/nerdtree'
Plugin 'jistr/vim-nerdtree-tabs'
Plugin 'vim-syntastic/syntastic'
Plugin 'xolox/vim-misc'
Plugin 'xolox/vim-easytags'
Plugin 'majutsushi/tagbar'
Plugin 'ctrlpvim/ctrlp.vim'
Plugin 'vim-scripts/a.vim'
" ----- Working with Git ----------------------------------------------
Plugin 'airblade/vim-gitgutter'
Plugin 'tpope/vim-fugitive'
" ----- Other text editing features -----------------------------------
Plugin 'Raimondi/delimitMate'
" ----- man pages, tmux -----------------------------------------------
Plugin 'jez/vim-superman'
Plugin 'christoomey/vim-tmux-navigator'
" ----- Syntax plugins ------------------------------------------------
Plugin 'jez/vim-c0'
Plugin 'jez/vim-ispc'
Plugin 'kchmck/vim-coffee-script'
" ---- Extras/Advanced plugins ----------------------------------------
" Highlight and strip trailing whitespace
"Plugin 'ntpeters/vim-better-whitespace'
" Easily surround chunks of text
"Plugin 'tpope/vim-surround'
" Align CSV files at commas, align Markdown tables, and more
"Plugin 'godlygeek/tabular'
" Automaticall insert the closing HTML tag
"Plugin 'HTML-AutoCloseTag'
" Make tmux look like vim-airline (read README for extra instructions)
"Plugin 'edkolev/tmuxline.vim'
" All the other syntax plugins I use
"Plugin 'ekalinin/Dockerfile.vim'
"Plugin 'digitaltoad/vim-jade'
"Plugin 'tpope/vim-liquid'
"Plugin 'cakebaker/scss-syntax.vim'
call vundle#end()
filetype plugin indent on
" --- General settings ---
set backspace=indent,eol,start
set ruler
set number
set showcmd
set incsearch
set hlsearch
syntax on
set mouse=a
" We need this for plugins like Syntastic and vim-gitgutter which put symbols
" in the sign column.
hi clear SignColumn
" ----- Plugin-Specific Settings --------------------------------------
" ----- altercation/vim-colors-solarized settings -----
" Toggle this to "light" for light colorscheme
set background=dark
" Uncomment the next line if your terminal is not configured for solarized
let g:solarized_termcolors=256
" Set the colorscheme
colorscheme solarized
" ----- bling/vim-airline settings -----
" Always show statusbar
set laststatus=2
" Fancy arrow symbols, requires a patched font
" To install a patched font, run over to
" https://github.com/abertsch/Menlo-for-Powerline
" download all the .ttf files, double-click on them and click "Install"
" Finally, uncomment the next line
"let g:airline_powerline_fonts = 1
" Show PASTE if in paste mode
let g:airline_detect_paste=1
" Show airline for tabs too
let g:airline#extensions#tabline#enabled = 1
" Use the solarized theme for the Airline status bar
let g:airline_theme='solarized'
" ----- jistr/vim-nerdtree-tabs -----
" Open/close NERDTree Tabs with \t
nmap <silent> <leader>t :NERDTreeTabsToggle<CR>
" To have NERDTree always open on startup
let g:nerdtree_tabs_open_on_console_startup = 1
" ----- scrooloose/syntastic settings -----
let g:syntastic_error_symbol = '✘'
let g:syntastic_warning_symbol = "▲"
augroup mySyntastic
au!
au FileType tex let b:syntastic_mode = "passive"
augroup END
" ----- xolox/vim-easytags settings -----
" Where to look for tags files
set tags=./tags;,~/.vimtags
" Sensible defaults
let g:easytags_events = ['BufReadPost', 'BufWritePost']
let g:easytags_async = 1
let g:easytags_dynamic_files = 2
let g:easytags_resolve_links = 1
let g:easytags_suppress_ctags_warning = 1
" ----- majutsushi/tagbar settings -----
" Open/close tagbar with \b
nmap <silent> <leader>b :TagbarToggle<CR>
" Uncomment to open tagbar automatically whenever possible
"autocmd BufEnter * nested :call tagbar#autoopen(0)
" ----- airblade/vim-gitgutter settings -----
" In vim-airline, only display "hunks" if the diff is non-zero
let g:airline#extensions#hunks#non_zero_only = 1
" ----- Raimondi/delimitMate settings -----
let delimitMate_expand_cr = 1
augroup mydelimitMate
au!
au FileType markdown let b:delimitMate_nesting_quotes = ["`"]
au FileType tex let b:delimitMate_quotes = ""
au FileType tex let b:delimitMate_matchpairs = "(:),[:],{:},`:'"
au FileType python let b:delimitMate_nesting_quotes = ['"', "'"]
augroup END
" ----- jez/vim-superman settings -----
" better man page support
noremap K :SuperMan <cword><CR>

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dotfiles/common/.zshrc Normal file
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# Shell options
setopt autocd menucomplete correct globdots extendedglob nomatch notify \
share_history inc_append_history hist_expire_dups_first hist_reduce_blanks \
hist_find_no_dups hist_verify extended_history auto_pushd pushd_ignore_dups \
prompt_subst
unsetopt beep
bindkey -e
# Load secrets
if [[ -f $HOME/.env ]]; then
set -a # automatically export all variables
source "$HOME/.env"
set +a
fi
# Completions
local compdump=${XDG_CACHE_HOME:-$HOME/.cache}/zsh/zcompdump-${HOST}-${ZSH_VERSION}
[[ -d ${compdump:h} ]] || mkdir -p ${compdump:h}
zstyle ':completion:*' menu select
zstyle ':completion:*' gain-privileges 1
zstyle ':completion:*:descriptions' format '%U%B%d%b%u'
zmodload zsh/complist
autoload -Uz compinit && compinit -d "$compdump"
# History
HISTFILE=${XDG_STATE_HOME:-$HOME}/.histfile
[[ -d $HISTFILE:h ]] || mkdir -p $HISTFILE:h
HISTSIZE=1000000
SAVEHIST=1000000
autoload -Uz up-line-or-beginning-search down-line-or-beginning-search
zle -N up-line-or-beginning-search
zle -N down-line-or-beginning-search
# Colors
autoload -Uz colors && colors
# Prompt
if [[ $EUID -eq 0 ]]; then
user_color=red
else
user_color=white
fi
# Assign colors based on the hostname
# https://www.ditig.com/256-colors-cheat-sheet
if [[ -v TOOLBOX_PATH ]]; then
host_color=magenta
elif [[ -v DISTROBOX_ENTER_PATH ]]; then
host_color=15
else
case $HOSTNAME in
laptop) host_color=green ;;
workstation) host_color=red ;;
bryan-pc) host_color=cyan ;;
time4vps) host_color=blue ;;
racknerd) host_color=yellow ;;
htpc) host_color=214 ;;
hartmanlab) host_color=magenta ;;
router) host_color=blue ;;
ax6000) host_color=87 ;;
home-router) host_color=218 ;;
vm-fedora*) host_color=57 ;;
vm-alma*) host_color=214 ;;
*) host_color=white ;;
esac
fi
_git_prompt() {
local br
if br=$(git symbolic-ref --short HEAD 2>/dev/null); then
print -n " %F{242}($br)%f"
fi
}
PROMPT='[%F{'$user_color'}%n%f@%F{'$host_color'}%m%f]%~$(_git_prompt)%(!.#.$) '
# RPROMPT='%*' # display clock to right of screen
precmd() { print -Pn "\e]0;%n@%m: ${PWD/#$HOME/~}\a" ; }
# Set hostname on OpenWRT
[[ -z $HOSTNAME ]] && HOSTNAME=$(noglob uci get system.@system[0].hostname 2>/dev/null)
# Paths
typeset -U path PATH
path=(
$HOME/bin
$HOME/.local/bin
$HOME/documents/develop/scripts/shell/.local/bin
$HOME/.cargo/bin
$path
)
export PATH
export R_LIBS_USER="$HOME/R/qhtcp-workflow"
# Keybindings
typeset -g -A key
for k v in \
Home khome End kend Insert kich1 Backspace kbs Delete kdch1 \
Up kcuu1 Down kcud1 Left kcub1 Right kcuf1 PageUp kpp PageDown knp ShiftTab kcbt; do
[[ -n ${terminfo[$v]} ]] && key[$k]=${terminfo[$v]}
done
bindkey -- ${key[Home]-} beginning-of-line
bindkey -- ${key[End]-} end-of-line
bindkey -- ${key[Insert]-} overwrite-mode
bindkey -- ${key[Backspace]-} backward-delete-char
bindkey -- ${key[Delete]-} delete-char
bindkey -- ${key[Left]-} backward-char
bindkey -- ${key[Right]-} forward-char
bindkey -- ${key[PageUp]-} beginning-of-buffer-or-history
bindkey -- ${key[PageDown]-} end-of-buffer-or-history
bindkey -- ${key[ShiftTab]-} reverse-menu-complete
bindkey -- ${key[Up]-} up-line-or-beginning-search
bindkey -- ${key[Down]-} down-line-or-beginning-search
if (( ${+terminfo[smkx]} && ${+terminfo[rmkx]} )); then
autoload -Uz add-zle-hook-widget
zle_app_start() { echoti smkx; }
zle_app_finish() { echoti rmkx; }
add-zle-hook-widget zle-line-init zle_app_start
add-zle-hook-widget zle-line-finish zle_app_finish
fi
# Aliases and one-liners
alias ll='ls -lh'
alias la='ls -A'
alias vmd='vmd -nt'
alias dnf-list-files='dnf repoquery -l'
alias gedit='gnome-text-editor'
alias xclip='xclip -selection c'
alias pdoman='podman'
alias git-list='git ls-tree -r HEAD --name-only'
alias chatgpt='aichat'
alias chromium='chromium --disable-features=GlobalShortcutsPortal'
podman-pull-all() {
for image in $(podman images --format "{{.Repository}}:{{.Tag}}"); do
podman pull "$image"
done
}
buildah-prune() { buildah rm --all; }
export EDITOR="code --wait"