Bryan Roessler bryan
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bryan pushed to dev at bryan/installJRMC 2024-09-03 19:56:54 -04:00
afd81aedf0 Fix Linux Mint codename
bryan pushed to dev at bryan/installJRMC 2024-09-03 19:55:00 -04:00
8047269971 Fix Linux Mint codename
bryan pushed to dev at bryan/installJRMC 2024-09-03 19:42:50 -04:00
9b17144472 Fix Linux Mint codename
bryan pushed to dev at bryan/installJRMC 2024-09-03 19:34:06 -04:00
74a4b9a72d Fix Linux Mint codename
bryan pushed to dev at bryan/installJRMC 2024-09-03 19:31:41 -04:00
0cf4cd4afe Fix Linux Mint codename
bryan pushed to dev at bryan/installJRMC 2024-09-03 19:11:06 -04:00
aface9f1ea Refactor install_package
bryan pushed to dev at bryan/installJRMC 2024-09-03 18:36:10 -04:00
f854c12234 Check if we're in git repo during self-update
bryan pushed to dev at bryan/installJRMC 2024-09-03 18:33:23 -04:00
85fb84d63e Improve variable declarations
bryan pushed to dev at bryan/installJRMC 2024-09-03 17:44:55 -04:00
90fad17267 Compare script version numbers for self update
bryan pushed to dev at bryan/installJRMC 2024-09-03 17:22:09 -04:00
da2aef16eb Increment dev version
bryan pushed to dev at bryan/installJRMC 2024-09-03 17:19:11 -04:00
21b3c20aea Add self-updater and some refactoring
bryan pushed to master at bryan/hartman-server 2024-09-02 16:05:52 -04:00
4311354325 Fix l_outside to match l_within df logic
40395d26e7 Use a single df for process_strains()
756075a7e5 Remove existing columns before join
66062438b5 Remove deprecated code and re-enable QC plots
65b273ffa1 Set SM to 0 by default
Compare 5 commits »
bryan pushed to master at bryan/hartman-server 2024-09-01 22:39:06 -04:00
d91a38004a Refactor out individual stats dataframes
bryan pushed to master at bryan/hartman-server 2024-09-01 21:50:42 -04:00
e915e77504 Refactor out calculate_bg_means
bryan pushed to master at bryan/hartman-server 2024-09-01 19:58:47 -04:00
6fe47421df Fix placement of l_witin_2sd_k
fd03fbb205 Add missing grouping var Gene
9627bcc69b Add missing grouping var Gene
Compare 3 commits »
bryan pushed to master at bryan/hartman-server 2024-09-01 18:58:07 -04:00
3fbde2de24 Fix stats_bg dataframe grouping
bryan pushed to master at bryan/hartman-server 2024-09-01 18:50:59 -04:00
79175e7821 Fix output dir usage
f1cc7b8404 Left join summary stats df with input df
f4c9985e40 Fix dataframe mutation order
e1f57ff7d7 Add more informative output
c6c4870d46 Skip empty QC plots
Compare 5 commits »
bryan pushed to master at bryan/hartman-server 2024-09-01 16:45:03 -04:00
6b1428a384 Add more output to main() to aid debug
bryan pushed to master at bryan/hartman-server 2024-09-01 16:31:16 -04:00
403a7490eb Move plotting further down main() to work on df
ddb7a98e50 Add helpful output to save_plots()
d61c7219d7 Add horizontal legend support to plotly
1fa8fc1552 Use as.factor(conc_num) for plots
a4de405b75 Use as.factor(scan) for box plots
Compare 12 commits »
bryan pushed to master at bryan/hartman-server 2024-09-01 03:19:15 -04:00
a484a2b104 Rollup for calculation_interaction_zscores refactor
05cd1a85d8 Auto-commit: apps/r/calculate_interaction_zscores5.R
ed1e3cf756 Auto-commit: apps/r/calculate_interaction_zscores5.R
9c48b25b42 Auto-commit: apps/r/calculate_interaction_zscores5.R
814cec8ca2 Auto-commit: apps/r/calculate_interaction_zscores5.R
Compare 10 commits »