Complete EZview reformatting
This commit is contained in:
@@ -1,43 +1,37 @@
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%EZsingleExUserRF
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% EZsingleExUserRF
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global exp
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usrRefFg=0;
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prompt={'Enter GeneName to use as Reference:',...
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'Enter Specifics Term if used to futher specify Reference '}
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dlg_title='User Reference Input';
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num_lines=1;
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def={'RF1','None'};
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answer=inputdlg(prompt,dlg_title,num_lines,def);
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rfGene=cell2mat(answer(1));
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if ~strcmpi(rfGene,'RF1')|| ~strcmpi(rfGene,'RF2'), usrRefFg=1; end
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rfSpec=answer(2); %if strcmpi(answer(2),'None'), rfSpec=''; end
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rfGnSp=strcat(rfGene,rfSpec);
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if strcmpi(rfSpec,'None'), rfGnSp=strcat(rfGene,'-'); end
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usrRefFg=0;
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prompt={'Enter GeneName to use as Reference:',...
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'Enter Specifics Term if used to futher specify Reference '}
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dlg_title='User Reference Input';
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num_lines=1;
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def={'RF1','None'};
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answer=inputdlg(prompt,dlg_title,num_lines,def);
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rfGene= cell2mat(answer(1));
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if ~strcmpi(rfGene,'RF1')|| ~strcmpi(rfGene,'RF2'), usrRefFg=1; end
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rfSpec= answer(2); %if strcmpi(answer(2),'None'), rfSpec= ''; end
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rfGnSp= strcat(rfGene,rfSpec);
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if strcmpi(rfSpec,'None'), rfGnSp= strcat(rfGene,'-'); end
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%for n=1:size(matFile,2)
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% for n=1:size(matFile,2)
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n=1;
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%*********************************************************************
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EZmultiGeneRFsLst %**
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%*********************************************************
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EZdiagRFsSheet %**
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%********************
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EZmultiGeneRFsLst
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EZdiagRFsSheet
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Exp(expN).Dexp(n).RFrnames=rnames;
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Exp(expN).Dexp(n).RFdata= data;
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%*********************************************************
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Exp(expN).Dexp(n).RFdata=data;
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RFconfig=0;
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if sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmean'))&&...
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~isempty(Exp(expN).Dexp(n).RFmean)&&...
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sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmeanG'))&&...
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isempty(Exp(expN).Dexp(n).RFmeanG)
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RFconfig=1;
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if sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmean')) ...
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&& ~isempty(Exp(expN).Dexp(n).RFmean) ...
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&& sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmeanG')) ...
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&& isempty(Exp(expN).Dexp(n).RFmeanG)
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RFconfig=1;
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end
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if sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmean'))==0 ||...
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isempty(Exp(expN).Dexp(n).RFmean)&&...
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sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmeanG'))&&...
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~isempty(Exp(expN).Dexp(n).RFmeanG)
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RFconfig=2;
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if sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmean'))==0 ...
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|| isempty(Exp(expN).Dexp(n).RFmean) ...
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&& sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmeanG')) ...
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&& ~isempty(Exp(expN).Dexp(n).RFmeanG)
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RFconfig=2;
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end
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if sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmean'))&&...
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~isempty(Exp(expN).Dexp(n).RFmean)&&...
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@@ -45,88 +39,76 @@ if sum(ismember(fieldnames(Exp(expN).Dexp(n)),'RFmean'))&&...
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~isempty(Exp(expN).Dexp(n).RFmeanG)
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RFconfig=3;
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end
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Exp(expN).RFconfig= RFconfig;
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Exp(expN).Dexp(n).RFconfig= RFconfig;
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%**********************************************
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Exp(expN).RFconfig=RFconfig;
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Exp(expN).Dexp(n).RFconfig=RFconfig;
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try msgBadGeneName, catch, end
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try
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Exp(expN).Dexp(n).resetHtmpTg =5; %Exp(expN).resetHtmpTg =5;
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if RFconfig==0,
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RFconfigMsg= 'No RF1 references in this Experiment Job'
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Exp(expN).Dexp(n).resetHtmpTg =3; %Exp(expN).resetHtmpTg =3;
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end
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Exp(expN).Dexp(n).resetHtmpTg =5; %Exp(expN).resetHtmpTg =5;
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if RFconfig==0,
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RFconfigMsg='No RF1 references in this Experiment Job'
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Exp(expN).Dexp(n).resetHtmpTg =3; %Exp(expN).resetHtmpTg =3;
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end
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catch
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end
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%***************************
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%*********************************************************************
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%end
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%###############################################################################
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%}
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%********Auto select Zone and load listboxGnOrf data**********
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% Auto select Zone and load listboxGnOrf data
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DexpN=1;
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zeroCLn= zeros(1,DMnum);
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Exp(expN).expLoadCnt= Exp(expN).expLoadCnt+1; expLdCnt= Exp(expN).expLoadCnt;
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zeroCLn=zeros(1,DMnum);
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Exp(expN).expLoadCnt=Exp(expN).expLoadCnt+1; expLdCnt=Exp(expN).expLoadCnt;
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if expN==1
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set(handles.zoneRad1,'value',1)
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set(handles.zoneRad2,'value',0)
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set(handles.zoneRad3,'value',0)
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orfLstSel=get(handles.GeneOrfTog,'value')
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set(handles.zoneRad1,'value',1)
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set(handles.zoneRad2,'value',0)
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set(handles.zoneRad3,'value',0)
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orfLstSel=get(handles.GeneOrfTog,'value')
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if orfLstSel==1
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set(handles.listboxGnOrf,'string',Exp(1).Dexp(1).srtOrfLst)
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set(handles.listboxGnOrf,'string',Exp(1).Dexp(1).srtOrfLst)
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else
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set(handles.listboxGnOrf,'string',Exp(1).Dexp(1).srtGnLst)
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set(handles.listboxGnOrf,'string',Exp(1).Dexp(1).srtGnLst)
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end
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DNLaxes1= handles.DNLaxes1;
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DNLaxes1=handles.DNLaxes1;
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Exp(1).hzeroCLn(expLdCnt)=plot(DNLaxes1,zeroCLn,1:DMnum,'y');
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end
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if expN==2
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set(handles.zoneRad1,'value',0)
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set(handles.zoneRad3,'value',0)
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set(handles.zoneRad2,'value',1)
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orfLstSel= get(handles.GeneOrfTog,'value');
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set(handles.zoneRad1,'value',0)
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set(handles.zoneRad3,'value',0)
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set(handles.zoneRad2,'value',1)
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orfLstSel=get(handles.GeneOrfTog,'value');
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if orfLstSel==1
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set(handles.listboxGnOrf,'string',Exp(2).Dexp(1).srtOrfLst)
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set(handles.listboxGnOrf,'string',Exp(2).Dexp(1).srtOrfLst)
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else
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set(handles.listboxGnOrf,'string',Exp(2).Dexp(1).srtGnLst)
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set(handles.listboxGnOrf,'string',Exp(2).Dexp(1).srtGnLst)
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end
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DNLaxes2= handles.DNLaxes2;
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DNLaxes2=handles.DNLaxes2;
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Exp(2).hzeroCLn(expLdCnt)=plot(DNLaxes2,zeroCLn,1:DMnum,'y');
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end
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if expN==3
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set(handles.zoneRad1,'value',0)
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set(handles.zoneRad2,'value',0)
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set(handles.zoneRad3,'value',1)
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orfLstSel=get(handles.GeneOrfTog,'value');
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set(handles.zoneRad1,'value',0)
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set(handles.zoneRad2,'value',0)
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set(handles.zoneRad3,'value',1)
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orfLstSel=get(handles.GeneOrfTog,'value');
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if orfLstSel==1
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set(handles.listboxGnOrf,'string',Exp(3).Dexp(1).srtOrfLst)
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set(handles.listboxGnOrf,'string',Exp(3).Dexp(1).srtOrfLst)
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else
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set(handles.listboxGnOrf,'string',Exp(3).Dexp(1).srtGnLst)
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set(handles.listboxGnOrf,'string',Exp(3).Dexp(1).srtGnLst)
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end
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DNLaxes3= handles.DNLaxes3;
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DNLaxes3=handles.DNLaxes3;
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Exp(3).hzeroCLn(expLdCnt)=plot(DNLaxes3,zeroCLn,1:DMnum,'y');
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end
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if Exp(4).interacPBsel==0 %if interaction "raw" don't show a center line
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if Exp(4).interacPBsel==0 % if interaction "raw" don't show a center line
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for i=1:Exp(expN).expLoadCnt,
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try
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set(Exp(expN).hzeroCLn(i),'visible','off');
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try
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set(Exp(expN).hzeroCLn(i),'visible','off');
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catch
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catchissue='Ln521'
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i
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end
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i
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end
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end
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end
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%***************************
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% HtMapTog 'string', 'Current user L/N' selection'
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Exp(expN).Dexp(DexpN).spotIndx= [];
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Exp(expN).Dexp(DexpN).spotIndx=[];
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if expN==1,
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Exp(1).htmapPBsel=0;
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set(handles.HtMapTog1,'string','L')
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@@ -143,5 +125,3 @@ if expN==3,
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EZhtMap
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end
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htMapTogPBfg=0;
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%*******************************************************************
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