bryan/hartman-server
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity

Gracefully handle empty var cols

Browse Source
This commit is contained in:
Bryan Roessler
2024-09-12 19:24:53 -04:00
parent 88a0429bca
commit 270cc8def5
1 changed files with 4 additions and 4 deletions
Download Patch File Download Diff File Expand all files Collapse all files

8
qhtcp-workflow/apps/r/calculate_interaction_zscores.R
View File

@@ -171,7 +171,7 @@ calculate_summary_stats <- function(df, variables, group_vars = c("OrfRep", "con
), .names = "{.fn}_{.col}")
)
print(summary_stats)
# print(summary_stats)
# Prevent .x and .y suffix issues by renaming columns
df_cleaned <- df %>%
@@ -224,10 +224,10 @@ calculate_interaction_scores <- function(df, max_conc, variables, group_vars = c
across(all_of(variables), list(
mean = ~mean(., na.rm = TRUE),
median = ~median(., na.rm = TRUE),
max = ~max(., na.rm = TRUE),
min = ~min(., na.rm = TRUE),
max = ~ifelse(all(is.na(.)), NA, max(., na.rm = TRUE)),
min = ~ifelse(all(is.na(.)), NA, min(., na.rm = TRUE)),
sd = ~sd(., na.rm = TRUE),
se = ~sd(., na.rm = TRUE) / sqrt(sum(!is.na(.)) - 1)
se = ~ifelse(sum(!is.na(.)) > 1, sd(., na.rm = TRUE) / sqrt(sum(!is.na(.)) - 1), NA)
), .names = "{.fn}_{.col}")
) %>%
ungroup()