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Better handle missing aesthetics

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Bryan Roessler
2024-09-12 22:53:20 -04:00
parent d8c66a6f9a
commit 2f85b32a76
1 changed files with 14 additions and 6 deletions
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20
qhtcp-workflow/apps/r/calculate_interaction_zscores.R
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@@ -390,11 +390,19 @@ generate_and_save_plots <- function(output_dir, file_name, plot_configs, grid_la
# print(df %>% select(any_of(c("OrfRep", "Plate", "scan", "Col", "Row", "num", "OrfRep", "conc_num", "conc_num_factor", # print(df %>% select(any_of(c("OrfRep", "Plate", "scan", "Col", "Row", "num", "OrfRep", "conc_num", "conc_num_factor",
# "delta_bg_tolerance", "delta_bg", "Gene", "L", "K", "r", "AUC", "NG", "DB"))), n = 5) # "delta_bg_tolerance", "delta_bg", "Gene", "L", "K", "r", "AUC", "NG", "DB"))), n = 5)
# Define aes mapping based on the presence of y_var # Plots are testy about missing aesthetics, so handle them here
aes_mapping <- if (is.null(config$y_var)) { aes_mapping <- if (is.null(config$color_var)) {
aes(x = !!sym(config$x_var), color = as.factor(!!sym(config$color_var))) if (is.null(config$y_var)) {
aes(x = !!sym(config$x_var))
} else {
aes(x = !!sym(config$x_var), y = !!sym(config$y_var))
}
} else { } else {
aes(x = !!sym(config$x_var), y = !!sym(config$y_var), color = as.factor(!!sym(config$color_var))) if (is.null(config$y_var)) {
aes(x = !!sym(config$x_var), color = as.factor(!!sym(config$color_var)))
} else {
aes(x = !!sym(config$x_var), y = !!sym(config$y_var), color = as.factor(!!sym(config$color_var)))
}
} }
plot <- ggplot(df, aes_mapping) plot <- ggplot(df, aes_mapping)
@@ -929,7 +937,8 @@ main <- function() {
y_var = var, y_var = var,
plot_type = "box", plot_type = "box",
title = paste("Plate analysis by Drug Conc for", var, stage, "quality control"), title = paste("Plate analysis by Drug Conc for", var, stage, "quality control"),
error_bar = FALSE, color_var = "conc_num") error_bar = FALSE,
color_var = "conc_num")
plate_analysis_boxplots <- append(plate_analysis_boxplots, list(config)) plate_analysis_boxplots <- append(plate_analysis_boxplots, list(config))
} }
@@ -1193,7 +1202,6 @@ main <- function() {
) %>% ) %>%
ungroup() ungroup()
rank_plot_configs <- c( rank_plot_configs <- c(
generate_rank_plot_configs(zscores_interactions_filtered, "Rank_L", "Avg_Zscore_L", "L"), generate_rank_plot_configs(zscores_interactions_filtered, "Rank_L", "Avg_Zscore_L", "L"),
generate_rank_plot_configs(zscores_interactions_filtered, "Rank_K", "Avg_Zscore_K", "K") generate_rank_plot_configs(zscores_interactions_filtered, "Rank_K", "Avg_Zscore_K", "K")