Organize old files
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240
workflow/.old/apps/matlab/ezview/TempBU/QkVexps.m
Executable file
240
workflow/.old/apps/matlab/ezview/TempBU/QkVexps.m
Executable file
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%Quickview of Exp Images one from each folder at selected timept
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function QkVexps %QkviewImages
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w=pwd;
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[Selfile, pathname]=uigetfile({'*.bmp';'*.tif';'*.*'},'Select timepoint file','MultiSelect','off');
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cd(pathname)
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flist=dir
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cd ..
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ExpFdr=pwd
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cd ..
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EstudyDir=pwd
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ExpList= dir;
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cd(w)
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day=[];
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Dpos=[];
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%Determine if Exps grouped into Day folders
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studyNum=1;
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dayIndx=0;
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studyIndx=0;
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for i=1:size(ExpList,1)
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if ~isequal(ExpList(i).name,'.DS_Store') %|| ~strfind(ExpList(i),'DS')
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Dpos=max(strfind(ExpList(i).name,'D'));
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if ~isempty(Dpos)
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tmpExpName=ExpList(i).name;
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if isempty(day)
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if isnumeric(str2double(tmpExpName((Dpos+1):end)))
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dayIndx=dayIndx+1;
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day(dayIndx)= str2double(tmpExpName((Dpos+1):end));
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daytx{dayIndx}= strcat('D',(tmpExpName((Dpos+1):end)));
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studyIndx=studyIndx+1;
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dayLst(dayIndx).study{studyIndx}= tmpExpName;
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end
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elseif sum(day==(str2double(tmpExpName((Dpos+1):end))))>0 %capture the experimentNames into studyLst sets
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studyIndx=studyIndx+1;
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dayLst(dayIndx).study{studyIndx}= tmpExpName;
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elseif sum(day==(str2double(tmpExpName((Dpos+1):end))))==0 %capture the daynumber as a number
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dayIndx=dayIndx+1;
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day(dayIndx)= str2num(tmpExpName((Dpos+1):end)); %if the daynumber is unique store in day vector
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daytx{dayIndx}= strcat('D',(tmpExpName((Dpos+1):end)));
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studyIndx=1;
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dayLst(dayIndx).study{studyIndx}= tmpExpName;
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end %if isempty(day)
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end %if ~isempty(Dpos)
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end %if ~isequal(ExpList(i),'.DS_Store')
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end %for i=1:size(ExpList,1)
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nonstdDdirFlg=0
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if length(day)==1
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nonstdDirFlg=1;
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else
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nonstdDirFlg=0;
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end
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if nonstdDirFlg==0
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cd(EstudyDir)
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%for i=1:size(ExpList,1)
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for i=1:length(dayLst)
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for j=1:length(dayLst(i).study)
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curDay= daytx(i)
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curExp= char(dayLst(i).study(j))
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curExpNumName= strcat('StudyExp',num2str(j));
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cd (fullfile(EstudyDir,curExp))
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curExpDir=pwd;
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plateDir=dir;
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for k=1:length(plateDir)
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if ~isequal(plateDir(k).name,'.DS_Store') %if .DS_Store Apple indiosyncratic fix
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if isnumeric(str2double(plateDir(k).name)) && ~isnan(str2double(plateDir(k).name)),
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curPlate= plateDir(k).name;
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cd (fullfile(curExpDir,curPlate))
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curPlateDir=pwd;
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%end
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try
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dotPos= strfind(Selfile,'.')
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tptx= (Selfile(1:dotPos-1));
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dstFileName= char(strcat('T',tptx,curDay,'_',curExp,'P',curPlate,'_',Selfile))
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curPlateName=strcat('Plate',curPlate)
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mkdir(fullfile(EstudyDir,'QkVstudySets',curExpNumName,curPlateName))
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copyfile(fullfile(curPlateDir,Selfile),fullfile(EstudyDir,'QkVstudySets',curExpNumName,curPlateName,dstFileName))
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catch
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end
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end %if isnumeric(str2double(plateDirNonstd(k).name)),
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end %if .DS_Store Apple indiosyncratic fix
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end %for k=1:length(plateDir)
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end %j=1:length(dayLst(i).study) for i=1:length(dayDirLst)
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end %i=1:length(dayLst) for i=1:size(ExpList,1)
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end %if nonstdDirFlg==0
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%****************************************************************************
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% Begin nonstandard Directory structure code
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%****************************************************************************
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if nonstdDirFlg==1
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cd(EstudyDir)
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cd ..
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studyDirNonstd=pwd;
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%mkdir(fullfile(studyDirNonstd,'QuikView'))
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dayDirLst=dir;
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for i=1:length(dayDirLst)
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if ~isequal(dayDirLst(i).name,'.DS_Store') %if .DS_Store Apple indiosyncratic fix
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if (strfind(dayDirLst(i).name,'Day')),
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curDay= dayDirLst(i).name;
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cd (fullfile(studyDirNonstd,curDay))
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%curStudyDaynonStd=pwd
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expDirNonstd=dir
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expNum=0;
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for j=1:length(expDirNonstd)
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if ~isequal(expDirNonstd(j).name,'.DS_Store') %if .DS_Store Apple indiosyncratic fix
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if (strfind(expDirNonstd(j).name,'D')),
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curExp= expDirNonstd(j).name;
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expNum=expNum+1;
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curExpNumName= strcat('StudyExp',num2str(expNum));
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cd (fullfile(studyDirNonstd,curDay,curExp))
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curExpDir=pwd;
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%end
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plateDirNonstd=dir;
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for k=1:length(plateDirNonstd)
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if ~isequal(plateDirNonstd(k).name,'.DS_Store') %if .DS_Store Apple indiosyncratic fix
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if isnumeric(str2double(plateDirNonstd(k).name)) && ~isnan(str2double(plateDirNonstd(k).name)),
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curPlate= plateDirNonstd(k).name;
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cd (fullfile(curExpDir,curPlate))
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curPlateDir=pwd;
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try
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dotPos= strfind(Selfile,'.')
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tptx= (Selfile(1:dotPos-1));
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dstFileName= strcat('T',tptx,curDay,'_',curExp,'P',curPlate,'_',Selfile)
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curPlateName=strcat('Plate',curPlate)
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mkdir(fullfile(studyDirNonstd,'QkVstudySets',curExpNumName,curPlateName))
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copyfile(fullfile(curPlateDir,Selfile),fullfile(studyDirNonstd,'QkVstudySets',curExpNumName,curPlateName,dstFileName))
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catch
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end
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end %if isnumeric(str2double(plateDirNonstd(k).name)),
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end %if (k) .DS_Store Apple indiosyncratic fix
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end %for k=1:length(plateDirNonstd)
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end%if (strfind(expDirNonstd(j).name,'D'))
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end %if (j).DS_Store Apple indiosyncratic fix
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end %for j=1:length(expDirNonstd)
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end %if (strfind(dayDirLst(i).name,'Day')),
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end %if (i).DS_Store Apple indiosyncratic fix
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end %for i=1:length(dayDirLst)
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end %if nonstdFlg
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cd(w)
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end
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%{
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nonstdDdirFlg=0
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if length(day)==1
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nonstdDirFlg=1;
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%mkdir(fullfile(ExpFdr,'QkVstudySets'))
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%Experiments are grouped together in subfolders by the day
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%What if experiment are run on approximately the same day
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%but differ by say a day or two???
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else
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nonstdDirFlg=0;
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%Experiments are all together in the standard way
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%What if experiment are run on approximately the same day
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%but differ by say a day or two???
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%The user will have to label experiments the same which are
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%to be grouped together even if not on the same day.
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end
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%+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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cd(w)
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m=1;
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for i=1:size(flist,1)
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if isequal(Selfile,flist(i).name)
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fnum=m
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break
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end
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m=m+1
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end
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%Select Image folders ++++++++++++++++++++++++
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d = dir(ExpFdr);
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Scname={};
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n=1;
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for i=1:size(d,1)
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if ~isempty(str2num(d(i).name))...
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||~isempty(strfind(d(i).name,'Scan'))
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Scname{n}=d(i).name
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n=n+1
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end
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end
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Srtnum=sort(str2double(Scname))
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clear Srtname
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for i=1:length(Srtnum)
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Srtname{i}=num2str(Srtnum(i));
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end
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%str = {Scname};
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[s,v] = listdlg('PromptString','Select a file:',...
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'SelectionMode','multiple',...
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'ListString',Srtname)
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%*********************************************************************
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%+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
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%++++++++++++++++++++++++++++++
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%Copy selected files to \QuikView Dir
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mkdir(fullfile(ExpFdr,'QuikView'))
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for j=1:size(s,2)
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srcDir= fullfile(ExpFdr,num2str(s(j)))
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%if Scan dir then must do something else to select '002' etc.
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try
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dstFileName= strcat(num2str(s(j)),'_',Selfile)
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copyfile(fullfile(srcDir,Selfile),fullfile(ExpFdr,'QuikView',dstFileName))
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catch
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sFileLst= dir(srcDir)
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selNumFile=sFileLst(fnum).name
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dstFileName= strcat(num2str(s(j)),'_',selNumFile)
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copyfile(fullfile(srcDir,selNumFile),fullfile(ExpFdr,'QuikView',dstFileName))
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end
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end
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cd(w)
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end
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%}
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