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DMPexcel2mat.m refactor

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Bryan Roessler
2024-07-27 01:14:44 -04:00
parent 2202b81777
commit 3b3ef5a2e2
1 changed files with 17 additions and 7 deletions
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24
workflow/templates/easy/DMPexcel2mat.m
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@@ -6,7 +6,7 @@ global drugMediaFile
global matDir global matDir
% If we already have mpdmFile, don't recreate % If we already have mpdmFile, don't recreate
if exist(mpdmFile, 'file') && ~isempty(mpdmFile) if (exist(mpdmFile, 'file') && ~isempty(mpdmFile))
disp(strcat('The Drug Media/MasterPlate Annotation File: ', mpdmFile, ' exists, skipping DMPexcel2mat.m')); disp(strcat('The Drug Media/MasterPlate Annotation File: ', mpdmFile, ' exists, skipping DMPexcel2mat.m'));
return return
end end
@@ -16,9 +16,11 @@ if ~exist(masterPlateFile, 'file') || isempty(masterPlateFile)
if exist(fullfile(matDir), 'dir') if exist(fullfile(matDir), 'dir')
% Try to find the masterPlateFile automatically (newest created first) % Try to find the masterPlateFile automatically (newest created first)
try try
files=dir(matDir) files=dir(matDir);
mpFiles={files(strncmp(files.name, 'MasterPlate_', 12)).name}; mpFiles={files(strncmp(files.name, 'MasterPlate_', 12)).name};
isempty(mpFiles) && throw(MException('MATLAB:dir', 'No MasterPlate_ files in the default MasterPlate directory')); if isempty(mpFiles)
throw(MException('MATLAB:dir', 'No MasterPlate_ files in the default MasterPlate directory'));
end
% this sorts by date (newest first) % this sorts by date (newest first)
[~, sortedIndices]=sort(datenum({files(strncmp(mpFiles.name, 'MasterPlate_', 12)).date}), 'descend'); [~, sortedIndices]=sort(datenum({files(strncmp(mpFiles.name, 'MasterPlate_', 12)).date}), 'descend');
sortedFiles=mpFiles(sortedIndices); sortedFiles=mpFiles(sortedIndices);
@@ -37,7 +39,9 @@ if ~exist(masterPlateFile, 'file') || isempty(masterPlateFile)
dirToScan=uigetdir(); dirToScan=uigetdir();
files=dir(dirToScan); files=dir(dirToScan);
mpFiles={files(strncmp(files.name, 'MasterPlate_', 12)).name}; mpFiles={files(strncmp(files.name, 'MasterPlate_', 12)).name};
isempty(mpFiles) && throw(MException('MATLAB:dir', 'No MasterPlate_ files in directory')) if isempty(mpFiles)
throw(MException('MATLAB:dir', 'No MasterPlate_ files in directory'))
end
% this sorts by date (newest first) % this sorts by date (newest first)
[~, sortedIndices]=sort(datenum({files(strncmp(mpFiles.name, 'MasterPlate_', 12)).date}), 'descend'); [~, sortedIndices]=sort(datenum({files(strncmp(mpFiles.name, 'MasterPlate_', 12)).date}), 'descend');
sortedFiles=mpFiles{sortedIndices}; sortedFiles=mpFiles{sortedIndices};
@@ -60,7 +64,9 @@ if ~exist(masterPlateFile, 'file') || isempty(masterPlateFile)
dirToScan=uigetdir(); dirToScan=uigetdir();
files=dir(dirToScan); files=dir(dirToScan);
mpFiles={files(strncmp(files.name, 'MasterPlate_', 12)).name}; mpFiles={files(strncmp(files.name, 'MasterPlate_', 12)).name};
isempty(mpFiles) && throw (MException('MATLAB:dir', 'No MasterPlate_ files in directory')) if isempty(mpFiles)
throw (MException('MATLAB:dir', 'No MasterPlate_ files in directory'));
end
% this sorts by date (newest first) % this sorts by date (newest first)
[~, sortedIndices]=sort(datenum({files(strncmp(mpFiles.name, 'MasterPlate_', 12)).date}), 'descend'); [~, sortedIndices]=sort(datenum({files(strncmp(mpFiles.name, 'MasterPlate_', 12)).date}), 'descend');
sortedFiles=mpFiles{sortedIndices}; sortedFiles=mpFiles{sortedIndices};
@@ -182,7 +188,9 @@ if ~exist(drugMediaFile, 'file') || isempty(drugMediaFile)
% Try to find the DrugMedia file automatically (newest created first) % Try to find the DrugMedia file automatically (newest created first)
files=dir(matDir) files=dir(matDir)
dmFiles={files(strncmp(files.name, 'DrugMedia_', 10)).name}; dmFiles={files(strncmp(files.name, 'DrugMedia_', 10)).name};
isempty(dmFiles) && throw (MException('MATLAB:dir', 'No DrugMedia_ files in directory')) if isempty(dmFiles)
throw (MException('MATLAB:dir', 'No DrugMedia_ files in directory'));
end
% this sorts by date (newest first) % this sorts by date (newest first)
[~, sortedIndices]=sort(datenum({files(strncmp(dmFiles.name, 'DrugMedia_', 10)).date}), 'descend'); [~, sortedIndices]=sort(datenum({files(strncmp(dmFiles.name, 'DrugMedia_', 10)).date}), 'descend');
sortedFiles=dmFiles{sortedIndices}; sortedFiles=dmFiles{sortedIndices};
@@ -204,7 +212,9 @@ if ~exist(drugMediaFile, 'file') || isempty(drugMediaFile)
dirToScan=uigetdir(); dirToScan=uigetdir();
files=dir(dirToScan) files=dir(dirToScan)
dmFiles={files(strncmp(files.name, 'DrugMedia_', 10)).name}; dmFiles={files(strncmp(files.name, 'DrugMedia_', 10)).name};
isempty(dmFiles) && throw (MException('MATLAB:dir', 'No DrugMedia_ files in directory')) if isempty(dmFiles)
throw (MException('MATLAB:dir', 'No DrugMedia_ files in directory'));
end
% this sorts by date (newest first) % this sorts by date (newest first)
[~, sortedIndices]=sort(datenum({files(strncmp(dmFiles.name, 'DrugMedia_', 10)).date}), 'descend'); [~, sortedIndices]=sort(datenum({files(strncmp(dmFiles.name, 'DrugMedia_', 10)).date}), 'descend');
sortedFiles=dmFiles{sortedIndices}; sortedFiles=dmFiles{sortedIndices};