bryan/hartman-server
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity

Clean up templates

Browse Source
This commit is contained in:
Bryan Roessler
2024-07-23 00:23:02 -04:00
parent 35ecad4174
commit 3bfc5fbad7
28 changed files with 21 additions and 16639 deletions
Download Patch File Download Diff File Expand all files Collapse all files

42
workflow/templates/qhtcp/Code/GTAtemplate.R
View File

@@ -1,27 +1,27 @@
#GTA (GoTermAveraging) Starting (Working Directory is /Code) All paths relative to /Code
#Your output may not be reproducible as org.Sc.sgd.db is uploaded from Bioconductor R library and changes
#Loops thru the number of experiments involved in study. JWR
Wstudy= getwd()
if (file.exists('../Exp1/ZScores/ZScores_Interaction.csv')){
inputFile <- '../Exp1/ZScores/ZScores_Interaction.csv'
expName= "Exp1"
dir.create("../GTAresults/Exp1")
}
if (file.exists('../Exp2/ZScores/ZScores_Interaction.csv')){
inputFile[2] <- '../Exp2/ZScores/ZScores_Interaction.csv'
expName[2]= "Exp2"
dir.create("../GTAresults/Exp2")
}
if (file.exists('../Exp3/ZScores/ZScores_Interaction.csv')){
inputFile[3] <- '../Exp3/ZScores/ZScores_Interaction.csv'
expName[3]= "Exp3"
dir.create("../GTAresults/Exp3")
}
if (file.exists('../Exp4/ZScores/ZScores_Interaction.csv')){
inputFile[4] <- '../Exp4/ZScores/ZScores_Interaction.csv'
expName[4]= "Exp4"
dir.create("../GTAresults/Exp4")
}
Wstudy= getwd()
if (file.exists('../Exp1/ZScores/ZScores_Interaction.csv')){
inputFile <- '../Exp1/ZScores/ZScores_Interaction.csv'
expName= "Exp1"
dir.create("../GTAresults/Exp1")
}
if (file.exists('../Exp2/ZScores/ZScores_Interaction.csv')){
inputFile[2] <- '../Exp2/ZScores/ZScores_Interaction.csv'
expName[2]= "Exp2"
dir.create("../GTAresults/Exp2")
}
if (file.exists('../Exp3/ZScores/ZScores_Interaction.csv')){
inputFile[3] <- '../Exp3/ZScores/ZScores_Interaction.csv'
expName[3]= "Exp3"
dir.create("../GTAresults/Exp3")
}
if (file.exists('../Exp4/ZScores/ZScores_Interaction.csv')){
inputFile[4] <- '../Exp4/ZScores/ZScores_Interaction.csv'
expName[4]= "Exp4"
dir.create("../GTAresults/Exp4")
}
outputPathGTA= "../GTAresults"
#dir.create(outPathGTA)