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Set SM to 0 by default

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Bryan Roessler
2024-09-01 22:53:33 -04:00
parent d91a38004a
commit 65b273ffa1
1 changed files with 1 additions and 0 deletions
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workflow/apps/r/calculate_interaction_zscores5.R
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@@ -124,6 +124,7 @@ load_and_process_data <- function(easy_results_file, sd = 3) {
delta_bg_tolerance = mean(delta_bg, na.rm = TRUE) + (sd * sd(delta_bg, na.rm = TRUE)), delta_bg_tolerance = mean(delta_bg, na.rm = TRUE) + (sd * sd(delta_bg, na.rm = TRUE)),
NG = if_else(L == 0 & !is.na(L), 1, 0), NG = if_else(L == 0 & !is.na(L), 1, 0),
DB = if_else(delta_bg >= delta_bg_tolerance, 1, 0), DB = if_else(delta_bg >= delta_bg_tolerance, 1, 0),
SM = 0,
OrfRep = if_else(ORF == "YDL227C", "YDL227C", OrfRep), OrfRep = if_else(ORF == "YDL227C", "YDL227C", OrfRep),
conc_num = as.numeric(gsub("[^0-9\\.]", "", Conc)), conc_num = as.numeric(gsub("[^0-9\\.]", "", Conc)),
conc_num_factor = as.numeric(as.factor(conc_num)) - 1) conc_num_factor = as.numeric(as.factor(conc_num)) - 1)