bryan/hartman-server
1
0
Fork 0
Code Issues Pull Requests Releases Wiki Activity

Who even knows at this point

Browse Source
This commit is contained in:
Bryan Roessler
2024-07-30 13:42:48 -04:00
parent fe9b338324
commit 79e3676ed3
38 changed files with 465 additions and 746 deletions
Download Patch File Download Diff File Expand all files Collapse all files

44
workflow/apps/matlab/ezview/EZexpSel.m
View File

@@ -570,7 +570,7 @@ else
Exp(expN).Dexp(1).RFmd1pltN= RF1mp;
try medValList1{d+1}= Exp(expN).Dexp(1).scan(rf1scN).plate(1).CFout(medianIndx,5); nonZeroCnt;
catch, catcherror = 'Ln356',
catch, catcherror='Ln356',
end
end %~isempty(nonZeroIndx) && length(medianIndx) > (.15*384)
@@ -853,8 +853,8 @@ uu= horzcat(uu,vv);
for d=1:DMnum
medianIndxG=[];
NZrfIndxG=[];
minG = min(nonzeros(vv(:,d)));
maxG = max(nonzeros(vv(:,d)));
minG=min(nonzeros(vv(:,d)));
maxG=max(nonzeros(vv(:,d)));
RFmeanG= mean(nonzeros(vv(:,d)));
RFstdG= std(nonzeros(vv(:,d)));
NZrfIndxG= find(vv(:,d)); %find(nonzeros(vv(:,d))); WWRONG FOR A WHILE!
@@ -976,7 +976,7 @@ if expN==1
set(handles.listboxGnOrf,'string',Exp(1).Dexp(1).srtGnLst)
end
DNLaxes1= handles.DNLaxes1; %ZoneRelated
Exp(1).hzeroCLn(expLdCnt) = plot(DNLaxes1,zeroCLn,1:DMnum,'y');
Exp(1).hzeroCLn(expLdCnt)=plot(DNLaxes1,zeroCLn,1:DMnum,'y');
end
if expN==2
@@ -993,7 +993,7 @@ if expN==2
set(handles.listboxGnOrf,'string',Exp(2).Dexp(1).srtGnLst)
end
DNLaxes2= handles.DNLaxes2; %ZoneRelated
Exp(2).hzeroCLn(expLdCnt) = plot(DNLaxes2,zeroCLn,1:DMnum,'y');
Exp(2).hzeroCLn(expLdCnt)=plot(DNLaxes2,zeroCLn,1:DMnum,'y');
end
@@ -1011,7 +1011,7 @@ if expN==3
set(handles.listboxGnOrf,'string',Exp(3).Dexp(1).srtGnLst)
end
DNLaxes3= handles.DNLaxes3; %ZoneRelated
Exp(3).hzeroCLn(expLdCnt) = plot(DNLaxes3,zeroCLn,1:DMnum,'y');
Exp(3).hzeroCLn(expLdCnt)=plot(DNLaxes3,zeroCLn,1:DMnum,'y');
end
if Exp(4).interacPBsel==0 %if interaction "raw" don't show a center line
@@ -1126,11 +1126,11 @@ elseif expType==2 %Multiple Experiment from in one Folder extraction
%*************************************************
ww=pwd;
try EZmultiDayGui; catch ME
msg = ME.message, cd(ww); end %* %*
msg=ME.message, cd(ww); end %* %*
try EZmultiDay; catch ME
msg = ME.message, cd(ww); end %*
msg=ME.message, cd(ww); end %*
try EZmultiExLoad; catch ME
msg = ME.message, cd(ww); end %*
msg=ME.message, cd(ww); end %*
%*********************
elseif expType==3
Exp(expN).DexpType= 'multi';
@@ -1148,11 +1148,11 @@ elseif expType==3
%*************************************************
ww=pwd;
try EZmultiDayGui; catch ME
msg = ME.message,cd(ww); end %* %*
msg=ME.message,cd(ww); end %* %*
try EZmultiDay; catch ME
msg = ME.message, cd(ww); end %*
msg=ME.message, cd(ww); end %*
try EZmultiExLoad; catch ME
msg = ME.message, cd(ww); end %*
msg=ME.message, cd(ww); end %*
%*********************
else
disp('Cancel Load Exp')
@@ -1205,12 +1205,12 @@ end
%User Reference Input Dialog Box used in the multiExperiment Chrono setup
prompt = {'Enter GeneName to use as Reference:',...
prompt={'Enter GeneName to use as Reference:',...
'Enter Specifics Term if used to futher specify Reference '}
dlg_title = 'User Reference Input';
num_lines = 1;
def = {'RF1','None'};
answer = inputdlg(prompt,dlg_title,num_lines,def);
dlg_title='User Reference Input';
num_lines=1;
def={'RF1','None'};
answer=inputdlg(prompt,dlg_title,num_lines,def);
rfGene= cell2mat(answer(1));
if ~strcmpi(rfGene,'RF1')|| ~strcmpi(rfGene,'RF2'), usrRefFg=1; end
rfSpec= answer(2); %if strcmpi(answer(2),'None'), rfSpec= ''; end
@@ -1220,12 +1220,12 @@ end
%+++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
%First user input prototype code
if ~exist('RF1scanN','var') && ~exist('RF2scanN','var') %change || &&
prompt = {'Enter Masterplate Number(s) of Your Reference GeneName spots:',...
prompt={'Enter Masterplate Number(s) of Your Reference GeneName spots:',...
'Enter GeneName of Your Reference:'};
dlg_title = 'User Reference Input';
num_lines = 1;
def = {'Ref MP(s)','USRrefGeneName'};
answer = inputdlg(prompt,dlg_title,num_lines,def);
dlg_title='User Reference Input';
num_lines=1;
def={'Ref MP(s)','USRrefGeneName'};
answer=inputdlg(prompt,dlg_title,num_lines,def);
rfMPstr= cell2mat(answer(1));
rfMPcomas=strfind((cell2mat(answer(1))),',');
n=0;