EASYconsole2.m rewrite
This commit is contained in:
690
workflow/templates/easy/EASYconsole2.m
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690
workflow/templates/easy/EASYconsole2.m
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%% MAIN WORKING FUNCTION: EASYconsole.m %%
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%This is a 2023a Expoorted App so that it can be edited in the unfortunate
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%new Matlab versions. Created by using the Matlab porting utility in 2023.
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% EASYconsole is a function designed to have a variable number of inputs and
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% outputs
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% These were defined globally in the parent script
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% global ExpOutmat
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% global ExpPath
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% global fhconsole
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% global resDir
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% global wCodeDir
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% global ImParMat
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% global openExpfile
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% global openExppath
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% global newExpfile
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% global newExppath
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% global SWnewExp
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% global matDir
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% global scan
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function varargout = EASYconsole(varargin)
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% initialize global variables for function EASYconsole
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global ExpOutmat
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global ExpPath
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global fhconsole
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global resDir
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global wCodeDir
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global ImParMat
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% changing directory to wCodeDir
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returnHome
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%% GUI INTERFACE DESIGN %%
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% beginning of GUI formation & design, see help GUI or help GUIDE in
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% command window for more information
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gui_Singleton = 1;
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gui_State = struct('gui_Name', mfilename, ...
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'gui_Singleton', gui_Singleton, ...
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'gui_OpeningFcn', @EASYconsole_OpeningFcn, ...
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'gui_OutputFcn', @EASYconsole_OutputFcn, ...
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'gui_LayoutFcn', [] , ...
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'gui_Callback', []);
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if nargin && ischar(varargin{1})
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gui_State.gui_Callback = str2func(varargin{1});
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end
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if nargout
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[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
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else
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gui_mainfcn(gui_State, varargin{:});
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end
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end
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% Try to enter WCodeDir
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function returnHome
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global wCodeDir
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try
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cd(wCodeDir)
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catch
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msgbox('Failed to enter selected default directory so starting search at root.');
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if ispc
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cd(fullfile('C:\'));
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elseif (isunix | ismac)
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cd(fullfile('/mnt/data'));
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else
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msgbox('Unknown platform')
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end
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end
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end
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% GUI
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% Easyconcole_OpeningFcn executes just before the EASYconsole GUI is made visible.
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% This function has no output args, see OutputFcn.
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% hObject--handle to figure
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% eventdata reserved - to be defined in a future version of MATLAB
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% handles--structure with handles and user data (see GUIDATA)
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% varargin--input arguments to EASYconsole (see VARARGIN)
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function EASYconsole_OpeningFcn(hObject, ~, handles, varargin)
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global ExpOutmat
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global ExpPath
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global fhconsole
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global resDir
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global wCodeDir
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global ImParMat
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% Choose default command line output for EASYconsole
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handles.output = hObject;
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% Update handles structure
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guidata(hObject, handles);
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%Figure header, Toolbar, etc. Setup
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fhconsole=gcf;
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set(fhconsole,'Toolbar','none');
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fhconsole=gcf;
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if exist('resDir','var')&&~isempty(resDir)
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set(fhconsole,'Name',strcat('EASYconsole- ',char(resDir)));
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else
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set(fhconsole,'Name','EASYconsole -Exp. Analysis NOT selected.')
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end
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end
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%% EASYconsole OUTPUT FUNCTION %%
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% Outputs from this function are returned to the command line.
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function varargout = EASYconsole_OutputFcn(~, ~, handles)
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% varargout--cell array for returning output args (see VARARGOUT);
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% hObject--handle to figure
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% eventdata reserved - to be defined in a future version of MATLAB
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% handles--structure with handles and user data (see GUIDATA)
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% Get default command line output from handles structure
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varargout{1} = handles.output;
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end
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%% CONSOLE BUTTON INTERFACES %%
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% File Button Interface
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function FileMenu_Callback(~, ~, ~)
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global wCodeDir
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cd(wCodeDir)
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end
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% Load Experiment Button Interface
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function LoadExp_Callback(~, ~, ~)
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global wCodeDir
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cd(wCodeDir)
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end
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% New Experiment Button Interface
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function NewExpDat_Callback(~, ~, ~)
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global newExpfile
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global newExppath
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global SWnewExp
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global ExpOutmat
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global ExpPath
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global matDir
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global resDir
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global wCodeDir
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global fhconsole
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global scan
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%% RESULTS DIRECTORY CREATION %%
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try
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% put all users on same working directory
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cd(wCodeDir)
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wcode=pwd;
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if ispc
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try
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% first attempt to begin search at current working directory
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cd(fullfile('C:\'));
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catch
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% if first attempt fails, throw message box and begin the search at the PC's C drive
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msgbox('Failure to find selected default Directory so starting Load search at the C Drive .');
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%cd(fullfile('C:\'));
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wcode
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end
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end
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if isunix
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try
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name = getenv('USER');
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if isequal(name,'jwrodger')
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cd('/mnt/data/ExpJobs')
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else
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%could provide other contingency options here if desireable for other users
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%if fails, just go to EASY code folder per JH
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cd(wcode) %JH has argued strongly to send user to code directory
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end
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catch
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msgbox('Failure to find selected default Directory so start Load search at root.');
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cd(fullfile('/'));
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end
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end
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if ismac
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cd(wcode) %JH has argued strongly to send user to code directory
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end
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% CREATE NEW EXPERIMENT %
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questdlg('\fontsize{20} NAME the file and NAVIGATE to the directory with the image folders.','File Creation','OK', struct('Default','OK','Interpreter','tex'));
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[newExpfile,newExppath] = uiputfile(' .mat');
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SWnewExp=1;
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cd (wcode)
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newExpfilePref= strrep(newExpfile,'.mat','');
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resDirName=strcat('Results',datestr(now,29),newExpfilePref);
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% creation of the Results file
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if ~exist(fullfile(newExppath,resDirName,'matResults'))
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mkdir (fullfile(newExppath,resDirName,'matResults'));
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end
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% assigning paths to global variables
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resDir= fullfile(newExppath,resDirName);
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matDir= fullfile(newExppath,resDirName,'matResults');
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ExpOutmat=fullfile(matDir,strcat(datestr(now,29),newExpfile));
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ExpPath= fullfile(newExppath);
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%***Added for 'parfor global' to preallocate 'scan' structure 20-0123*****
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nlist=dir(fullfile(ExpPath,'*'));
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nnn=0;
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for n=1:size(nlist,1)
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if (~isempty(str2num(nlist(n).name)))
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nnn=nnn+1;
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PnumLst(nnn)= (str2num(nlist(n).name));
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sl(nnn,1)={(nlist(n).name)};
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end
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end
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scanSize= size(sl,1);
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scanMax= max(str2double(sl));
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clear scan;
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scan(scanMax)= struct(); %[]; %changed for parfor global 20_0118
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%*************************************************************************
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save(ExpOutmat,'scan')
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% create 'PrintResults' file
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if ~exist(fullfile(ExpPath,resDirName,'PrintResults'))
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mkdir(fullfile(ExpPath,resDirName,'PrintResults'));
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end
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% copy 'figs' file and place it in ExpPath Directory
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if ~exist(fullfile(ExpPath,resDirName,'figs'))
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copyfile((fullfile(wCodeDir,'figs')), (fullfile(ExpPath,resDirName,'figs')))
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end
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% create 'CFfigs' file
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if ~exist(fullfile(ExpPath,resDirName,'CFfigs'))
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mkdir(fullfile(ExpPath,resDirName,'CFfigs'));
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end
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% copy 'PTmats' file and place it in ExpPath Directory
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if ~exist(fullfile(ExpPath,resDirName,'PTmats'))
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copyfile((fullfile(wCodeDir,'PTmats')), (fullfile(ExpPath,resDirName,'PTmats')))
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end
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% create 'Fotos' file
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if ~exist(fullfile(ExpPath,resDirName,'Fotos'))
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mkdir(fullfile(ExpPath,resDirName,'Fotos'));
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clear sbdg % reduce possible retention of a previous job sdbg
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sbdg= cell(1,scanMax);
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save((fullfile(resDir,'Fotos','Nbdg')),'sbdg');
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end
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% create backup 'Fotos' file
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if ~exist(fullfile(ExpPath,resDirName,'Fotos','BkUp'))
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mkdir(fullfile(ExpPath,resDirName,'Fotos','BkUp'));
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end
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catch ME
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cd(wCodeDir)
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disp('Error Creating a New Experiment. Loc: EASYconsole.m Lines 106-197')
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end
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% set the title for fhconsole depending on existence
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if exist('resDir','var')&&~isempty(resDir)
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set(fhconsole,'Name',strcat('EASYconsole- ',char(resDir)))
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else
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set(fhconsole,'Name','EASYconsole -Exp. Analysis NOT selected.')
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end
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end
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%% LOAD A PREVIOUS EXPERIMENT %%
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%*******LOAD Experiment Analysis directory/file structure
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function LoadDatFile_Callback(~, ~, ~)
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global openExpfile
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global openExppath
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global SWnewExp
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global ExpOutmat
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global ExpPath
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global matDir
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global resDir
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global wCodeDir
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global fhconsole
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global ImParMat
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try
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%cd(wCodeDir)
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%wcode=pwd;
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%cd ..
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%cd(wcode)
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% put all users on same working directory
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cd(wCodeDir)
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wcode=pwd;
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if ispc
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try
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% first attempt to begin search at current working directory
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cd(fullfile('C:\'));
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catch
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% if first attempt fails, throw message box and begin the search at the PC's C drive
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msgbox('Failure to find selected default Directory so starting Load search at the C Drive .');
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%cd(fullfile('C:\'));
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wcode
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end
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end
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if isunix
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try
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name = getenv('USER');
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if isequal(name,'jwrodger')
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cd('/mnt/data/ExpJobs')
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else
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%could provide other contingency options here if desireable for other users
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%if fails, just go to EASY code folder per JH
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cd(wcode) %JH has argued strongly to send user to code directory
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end
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catch
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msgbox('Failure to find selected default Directory so start Load search at root.');
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cd(fullfile('/'));
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end
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end
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if ismac
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cd(wcode) %JH has argued strongly to send user to code directory
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end
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%****************End
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%Navigation******************************************
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questdlg('\fontsize{20} Load file from ExpJobs/YourJob/YourResults/matResults','File Creation','OK', struct('Default','OK','Interpreter','tex'));
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[openExpfile,openExppath] = uigetfile('.mat','Open Experiment folder and data storage .mat file name','MultiSelect','off');
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SWnewExp=0;
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ExpOutmat= fullfile(openExppath,openExpfile);
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load(ExpOutmat);
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cd(openExppath)
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cd ..;
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resDir=pwd;
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cd ..;
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ExpPath=pwd;
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cd (wcode)
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ExpPath= fullfile(ExpPath);
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if isfolder(fullfile(openExppath, '..','..','1')) %If Inovation Vrobot Then
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if exist(fullfile(resDir,'PTmats','NImParameters.mat'))
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load(fullfile(resDir,'PTmats','NImParameters.mat'));
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else
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curDir=pwd;
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cd(wCodeDir)
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load NImParameters.mat
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cd(curDir)
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end
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else %If Epson 10Plate Scans Then>
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if exist(fullfile(resDir,'PTmats','ImParameters.mat'))
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load(fullfile(resDir,'PTmats','ImParameters.mat'));
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else
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curDir=pwd;
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cd(wCodeDir)
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load ImParameters.mat
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cd(curDir)
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end
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end
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matDir= fullfile(openExppath,'\');
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mkdir(fullfile(matDir,'BkUp'));
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% create supporting files
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if ~exist(fullfile(resDir,'PrintResults'))
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mkdir(fullfile(resDir,'PrintResults'));
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end
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if ~exist(fullfile(resDir,'figs'))
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mkdir(fullfile(resDir,'figs'));
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end
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if ~exist(fullfile(resDir,'CFfigs'))
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mkdir(fullfile(resDir,'CFfigs'));
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end
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if ~exist(fullfile(resDir,'PTmats'))
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mkdir(fullfile(resDir,'PTmats'));
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end
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if ~exist(fullfile(resDir,'Fotos'))
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mkdir(fullfile(resDir,'Fotos'));
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end
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catch
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cd(wCodeDir)
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end
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clear scan
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if exist('resDir','var')&&~isempty(resDir)
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fhconsole= gcf;
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set(fhconsole,'Name',strcat('EASYconsole- ',char(resDir)))
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else
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set(fhconsole,'Name','EASYconsole -Exp. Analysis NOT selected.')
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end
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end
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%% CALLBACKS %%
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% function Parameters_Callback(~, ~, ~)
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% global wCodeDir
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% cd(wCodeDir)
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% function CFparameters_Callback(~, ~, ~)
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% global wCodeDir
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% cd(wCodeDir)
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% function RunCF_Callback(~, ~, ~)
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% global wCodeDir
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% cd(wCodeDir)
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% try
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% CcurveFitStartup
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% catch ME
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% cd(wCodeDir)
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% end
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%
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% callback for the 'Run' in the dropdown menu
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function run_Callback(~, ~, ~)
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global wCodeDir
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try
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catch ME
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cd(wCodeDir)
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end
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end
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% function Dbase_Callback(~, ~, ~)
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% global wCodeDir
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% try
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% catch ME
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% cd(wCodeDir)
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% end
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% function runImAnal_Callback(~, ~, ~)
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% global wCodeDir
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% cd(wCodeDir)
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% try
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% ImStartup
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% catch ME
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% cd(wCodeDir)
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% EASYconsole
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% end
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function runPlateMapPintool_Callback(~, ~, ~)
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global wCodeDir
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cd(wCodeDir)
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try
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NImapPT
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catch ME
|
||||
cd(wCodeDir)
|
||||
EASYconsole
|
||||
end
|
||||
end
|
||||
|
||||
function NImCFcombo_Callback(~, ~, ~)
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global wCodeDir
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cd(wCodeDir)
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try
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par4Gbl_Main8c
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catch
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cd(wCodeDir)
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EASYconsole
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end
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||||
end
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||||
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function runPlateImAnal_Callback(~, ~, ~)
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global wCodeDir
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cd(wCodeDir)
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try
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NImStartupOnly
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catch ME
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cd(wCodeDir)
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||||
EASYconsole
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end
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||||
end
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||||
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% function runCF_Callback(~, ~, ~)
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% global wCodeDir
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% try
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% cd(wCodeDir)
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% CcurveFitStartup
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% catch ME
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% cd(wCodeDir)
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% end
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function PlateCFit_Callback(~, ~, ~)
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global wCodeDir
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global ExpOutmat
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try
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cd(wCodeDir)
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NCstart
|
||||
catch ME
|
||||
cd(wCodeDir)
|
||||
end
|
||||
end
|
||||
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||||
% function Gen_CF_GenORF_Callback(~, ~, ~)
|
||||
% global wCodeDir
|
||||
% try
|
||||
% DgenCFoutWnum
|
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% catch ME
|
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% cd(wCodeDir)
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||||
% EASYconsole
|
||||
% end
|
||||
|
||||
% function ImParams_Callback(~, ~, ~)
|
||||
% global wCodeDir
|
||||
% try
|
||||
% catch ME
|
||||
% cd(wCodeDir)
|
||||
% EASYconsole
|
||||
% end
|
||||
|
||||
|
||||
|
||||
%*************************
|
||||
% function createPTmap_Callback(~, ~, ~)
|
||||
% global wCodeDir
|
||||
% try
|
||||
% cd(wCodeDir)
|
||||
% ImapPT()
|
||||
% catch ME
|
||||
% cd(wCodeDir)
|
||||
% end
|
||||
%*************************
|
||||
function GenPrintouts_Callback(~, ~, ~)
|
||||
end
|
||||
%
|
||||
% function Gen_YXmaster_Callback(~, ~, ~)
|
||||
% global wCodeDir
|
||||
% try
|
||||
% Dgen_YXmasterFile
|
||||
% catch ME
|
||||
% cd(wCodeDir)
|
||||
% EASYconsole
|
||||
% end
|
||||
|
||||
% function Gen_CurveFitOut_Callback(~, ~, ~)
|
||||
% global wCodeDir
|
||||
% try
|
||||
% DgenLegCFout
|
||||
% catch ME
|
||||
% cd(wCodeDir)
|
||||
% EASYconsole
|
||||
% end
|
||||
|
||||
|
||||
% function Gen_CF_withNums_Callback(~, ~, ~)
|
||||
% global wCodeDir
|
||||
% try
|
||||
% DgenCFoutWnum
|
||||
% catch ME
|
||||
% cd(wCodeDir)
|
||||
% EASYconsole
|
||||
% end
|
||||
|
||||
|
||||
% function Gen_CF_withNumsOrfsGenes_Callback(~, ~, ~)
|
||||
% global wCodeDir
|
||||
% try
|
||||
% DgenCFoutWnumOrfgene
|
||||
% catch ME
|
||||
% cd(wCodeDir)
|
||||
% EASYconsole
|
||||
% end
|
||||
|
||||
% function Gen_CF_withNumsOrfsGenesPerts_Callback(~, ~, ~)
|
||||
% global wCodeDir
|
||||
% try
|
||||
% DgenCFoutWnumOrfgenePertsDev
|
||||
% catch ME
|
||||
% cd(wCodeDir)
|
||||
% EASYconsole
|
||||
% end
|
||||
|
||||
|
||||
% function zx_Callback(~, ~, ~)
|
||||
|
||||
|
||||
function uploadExcelMP2DB_Callback(~, ~, ~)
|
||||
end
|
||||
|
||||
% function uploadYXmaster2DB_Callback(~, ~, ~)
|
||||
|
||||
%
|
||||
% function Gen_CF4DB_Callback(~, ~, ~)
|
||||
%
|
||||
%
|
||||
% function Gen_CF4DB_Extras4Review_Callback(~, ~, ~)
|
||||
%
|
||||
%
|
||||
% function uploadCF2DB_Callback(~, ~, ~)
|
||||
|
||||
|
||||
% --------------------------------------------------------------------
|
||||
function runDMPexcel_Callback(~, ~, ~)
|
||||
global wCodeDir
|
||||
global ExpPath
|
||||
try
|
||||
DMPexcel2mat_2024winLinix %DMPexcel2mat_2023winLinix
|
||||
catch ME
|
||||
cd(wCodeDir)
|
||||
EASYconsole
|
||||
end
|
||||
end
|
||||
|
||||
% --------------------------------------------------------------------
|
||||
function runResults_DBcombo_Callback(~, ~, ~)
|
||||
global wCodeDir
|
||||
try
|
||||
DgenResults240430 %similar but semicolons removed to restore so cmdLine display info.
|
||||
%Dgen241010qhtcp %par4global -convert 1x1cell of 384cells to be like previous 1x384 cells CFparameter
|
||||
catch ME
|
||||
disp('Error in DgenResults240430')
|
||||
cd(wCodeDir)
|
||||
EASYconsole
|
||||
end
|
||||
end
|
||||
% --------------------------------------------------------------------
|
||||
function Tools_Callback(~, ~, ~)
|
||||
end
|
||||
|
||||
% --------------------------------------------------------------------
|
||||
function runOverlayPlots_Callback(~, ~, ~)
|
||||
global wCodeDir
|
||||
cd(wCodeDir)
|
||||
try
|
||||
DoverlayPlots2
|
||||
cd(wCodeDir)
|
||||
EASYconsole
|
||||
catch ME
|
||||
cd(wCodeDir)
|
||||
EASYconsole
|
||||
end
|
||||
end
|
||||
|
||||
% --------------------------------------------------------------------
|
||||
function runFotoStrip_Callback(~, ~, ~)
|
||||
global wCodeDir
|
||||
cd(wCodeDir)
|
||||
try
|
||||
F_NImStartup_CentCir
|
||||
cd(wCodeDir)
|
||||
EASYconsole
|
||||
catch ME
|
||||
cd(wCodeDir)
|
||||
EASYconsole
|
||||
end
|
||||
end
|
||||
|
||||
% --------------------------------------------------------------------
|
||||
function runDisplayFig_Callback(~, ~, ~)
|
||||
global wCodeDir
|
||||
cd(wCodeDir)
|
||||
try
|
||||
UfigDisplay
|
||||
catch ME
|
||||
cd(wCodeDir)
|
||||
EASYconsole
|
||||
end
|
||||
end
|
||||
|
||||
% --------------------------------------------------------------------
|
||||
function runViewParameters_Callback(~, ~, ~)
|
||||
global wCodeDir
|
||||
cd(wCodeDir)
|
||||
try
|
||||
|
||||
catch ME
|
||||
cd(wCodeDir)
|
||||
EASYconsole
|
||||
end
|
||||
end
|
||||
% --------------------------------------------------------------------
|
||||
function QkviewN_Callback(~, ~, ~)
|
||||
global wCodeDir
|
||||
cd(wCodeDir)
|
||||
try
|
||||
try
|
||||
cd fullfile(ExpPath)
|
||||
catch
|
||||
if ispc cd c:\
|
||||
else
|
||||
cd (fullfile('~'));
|
||||
end
|
||||
end
|
||||
QkviewImages
|
||||
catch ME
|
||||
cd(wCodeDir)
|
||||
EASYconsole
|
||||
end
|
||||
end
|
||||
|
||||
% --------------------------------------------------------------------
|
||||
function CFdisplay_Callback(~, ~, ~)
|
||||
global wCodeDir
|
||||
cd(wCodeDir)
|
||||
try
|
||||
NCsingleDisplay
|
||||
cd(wCodeDir)
|
||||
EASYconsole
|
||||
catch ME
|
||||
cd(wCodeDir)
|
||||
EASYconsole
|
||||
end
|
||||
end
|
||||
Reference in New Issue
Block a user