EASYconsole.m: Linting

workflow/templates/easy/EASYconsole.m

@@ -51,7 +51,7 @@ function varargout = EASYconsole(varargin)
     % Reimplementing here for stand-alone mode
     % While the easySuffix directory exists, increment by one and try again
     if exist(easySuffix, 'dir')
-      oldSuffix=easySuffix
+      oldSuffix=easySuffix;
       while exist(easySuffix, 'dir')
         count=1;
         easySuffix=strcat(oldSuffix,'.', num2str(count));
@@ -70,10 +70,10 @@ function varargout = EASYconsole(varargin)
 
   % Helpful variables for running in workflow mode that I'll probably have to reimplement in matlab anyways for standalone mode
   if exist('EASY_DIR','env')
-    EASY_DIR=fullfile(get_env('EASY_DIR'))
+    EASY_DIR=fullfile(get_env('EASY_DIR'));
     if easyDir ~= EASY_DIR % sanity check
       disp("WARNING: EASY_DIR does not match this script's default EASY location");
-      easyDir=EASY_DIR
+      easyDir=EASY_DIR;
     end
     disp(strcat('Using EASY script directory: ', easyDir, ' from environment variable EASY_DIR'));
   else
@@ -91,7 +91,7 @@ function varargout = EASYconsole(varargin)
   else
     easyResultsDirName=strcat('Results_',todayStr,'_',easySuffix);
     easyResultsDir=fullfile(scansDir,easyResultsDirName);
-    scansDir=fullfile(parent_dir,'ExpJobs') % relative to easy script dir
+    scansDir=fullfile(parent_dir,'ExpJobs'); % relative to easy script dir
     disp(strcat('Using project prefix: ', PROJECT_PREFIX, ' from environment variable PROJECT_PREFIX'))
   end
 
@@ -155,7 +155,7 @@ function EASYconsole_OpeningFcn(hObject, ~, handles, varargin)
   global easyResultsDir
 
   % Choose default command line output for EASYconsole
-  handles.output = hObject;
+  handles.output=hObject;
 
   % Update handles structure
   guidata(hObject, handles);
@@ -184,7 +184,7 @@ end
 % handles--structure with handles and user data (see GUIDATA)
 function varargout = EASYconsole_OutputFcn(~, ~, handles) 
   % Get default command line output from handles structure
-  varargout{1} = handles.output;
+  varargout{1}=handles.output;
 end
 
 %% CONSOLE BUTTON INTERFACES %%
@@ -242,18 +242,18 @@ function NewExpDat_Callback(~, ~, ~)
 
     % create supporting dirs
     % this is also in the workflow script but here for standalone mode
-    dirs = {'PrintResults', 'CFfigs', 'Fotos', 'Fotos/BkUp'};
+    dirs={'PrintResults', 'CFfigs', 'Fotos', 'Fotos/BkUp'};
-    for i = 1:length(dirs)
+    for i=1:length(dirs)
-      d = dirs{i};
+      d=dirs{i};
       if ~exist(fullfile(easyResultsDir, d), 'dir')
         mkdir(fullfile(easyResultsDir, d));
       end
     end
 
     % templateDirs are stored in the easy template directory
-    templates = {'figs', 'PTmats'}
+    templates={'figs', 'PTmats'};
-    for i = 1:length(templates)
+    for i=1:length(templates)
-      d = dirs{i};
+      d=dirs{i};
       if ~exist(fullfile(easyResultsDir, d), 'dir')
         copyfile((fullfile(easyDir,d)), (fullfile(easyResultsDir,d)));
       end
@@ -290,11 +290,11 @@ function LoadDatFile_Callback(~, ~, ~)
     questdlg('\fontsize{20} Load file from ExpJobs/YourJob/YourResults/matResults','File Creation','OK', struct('Default','OK','Interpreter','tex'));
     [inputFile,inputPath]=uigetfile('.mat','Open Experiment folder and data storage .mat file name','MultiSelect','off');
     SWnewExp=0;
-    matDir=fullfile(inputPath)
+    matDir=fullfile(inputPath);
     matFile=fullfile(inputPath,inputFile);
     load(matFile);
-    easyResultsDir=fullfile(matDir,'..')
+    easyResultsDir=fullfile(matDir,'..');
-    scansDir=fullfile(matDir,'..', '..')
+    scansDir=fullfile(matDir,'..', '..');
 
     if isfolder(fullfile(matDir, '..','..','1')) % If Inovation Vrobot Then
       if exist(fullfile(easyResultsDir,'PTmats','NImParameters.mat'), 'file')
@@ -313,9 +313,9 @@ function LoadDatFile_Callback(~, ~, ~)
     mkdir(fullfile(matDir,'BkUp'));
 
     % Create supporting dirs
-    dirs = {'PrintResults', 'figs', 'CFfigs', 'PTmats', 'Fotos'}
+    dirs={'PrintResults', 'figs', 'CFfigs', 'PTmats', 'Fotos'}
-    for i = 1:length(dirs)
+    for i=1:length(dirs)
-      d = dirs{i}
+      d=dirs{i};
       if ~exist(fullfile(easyResultsDir, d), 'dir')
         mkdir(fullfile(easyResultsDir, d));
       end
@@ -341,7 +341,7 @@ end
 function runPlateMapPintool_Callback(~, ~, ~)
   try   
     NImapPT
-  catch ME
+  catch
     EASYconsole
   end
 end
@@ -357,7 +357,7 @@ end
 function runPlateImAnal_Callback(~, ~, ~)
   try   
     NImStartupOnly
-  catch ME
+  catch
     EASYconsole
   end
 end
@@ -366,7 +366,7 @@ function PlateCFit_Callback(~, ~, ~)
   % global matFile % TODO BCR not sure if needed
   try
     NCstart  
-  catch ME
+  catch
   end
 end
 
@@ -380,7 +380,7 @@ function runDMPexcel_Callback(~, ~, ~)
   try
     % DMPexcel2mat_2024winLinix %DMPexcel2mat_2023winLinix
     DMPexcel2mat % TODO Can't find above so using what I have available
-  catch ME
+  catch
     EASYconsole
   end
 end
@@ -402,7 +402,7 @@ function runOverlayPlots_Callback(~, ~, ~)
   try   
     DoverlayPlots2
     EASYconsole
-  catch ME
+  catch 
     EASYconsole
   end
 end
@@ -411,7 +411,7 @@ function runFotoStrip_Callback(~, ~, ~)
   try   
     F_NImStartup_CentCir
     EASYconsole
-  catch ME
+  catch
     EASYconsole
   end
 end
@@ -419,14 +419,14 @@ end
 function runDisplayFig_Callback(~, ~, ~)
   try 
     UfigDisplay 
-  catch ME
+  catch
     EASYconsole
   end
 end
 
 function runViewParameters_Callback(~, ~, ~)
   try
-  catch ME
+  catch
     EASYconsole
   end
 end
@@ -434,7 +434,7 @@ end
 function QkviewN_Callback(~, ~, ~)
   try 
     QkviewImages
-  catch ME
+  catch
     EASYconsole
   end
 end
@@ -443,7 +443,7 @@ function CFdisplay_Callback(~, ~, ~)
   try   
     NCsingleDisplay
     EASYconsole
-  catch ME
+  catch
     EASYconsole
   end
 end