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Cleanup main loop

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This commit is contained in:
Bryan Roessler
2024-08-04 21:20:35 -04:00
parent 6a03b3fc7a
commit 8ea6a10ecc
1 changed files with 4 additions and 2 deletions
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6
workflow/qhtcp-workflow
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@@ -363,6 +363,9 @@ interactive_header() {
echo "Example: SCANS_DIR=/path/to/scans OUT_DIR=/path/to/out ./qhtcp-workflow $*" echo "Example: SCANS_DIR=/path/to/scans OUT_DIR=/path/to/out ./qhtcp-workflow $*"
echo "" echo ""
underline=$(tput smul)
nounderline=$(tput rmul)
# Ask to make our custom R library the default # Ask to make our custom R library the default
if [[ -z $R_LIBS_USER || $R_LIBS_USER != "$HOME/R/$SCRIPT_NAME" ]]; then if [[ -z $R_LIBS_USER || $R_LIBS_USER != "$HOME/R/$SCRIPT_NAME" ]]; then
echo "This script uses a local R library at $HOME/R/$SCRIPT_NAME" echo "This script uses a local R library at $HOME/R/$SCRIPT_NAME"
@@ -381,7 +384,7 @@ interactive_header() {
fi fi
echo "" echo ""
echo "Available Modules:" echo "${underline}Available Modules${nounderline}"
# Determine if we need two columns # Determine if we need two columns
if [[ ${#ALL_MODULES[@]} -gt 8 ]]; then if [[ ${#ALL_MODULES[@]} -gt 8 ]]; then
# Calculate the number of elements in each column # Calculate the number of elements in each column
@@ -521,7 +524,6 @@ interactive_header() {
done done
fi fi
fi fi
echo ""
# Let user choose or add project(s) # Let user choose or add project(s)
if [[ ${#PROJECTS[@]} -eq 0 ]]; then if [[ ${#PROJECTS[@]} -eq 0 ]]; then