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qhtcp-workflow/docs/Updating files/SGD readme files/go_terms.README

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+go_terms.tab		This file is TAB delimited and contains the GO terms and their definitions.
+
+NOTE: This file is NO LONGER periodically updated. Please see the Last Modified date on the Web display to find the file creation date on which the file was created.
+** For the most recent data, please use YeastMine.  The YeastMine template at https://yeastmine.yeastgenome.org/yeastmine/template.do?name=GO_Terms_Tab&scope=allwill retrieve the most recent data. **
+
+Columns the go_terms.tab is shown below.
+
+Columns are:			Contents:
+
+1) GOID (mandatory)		- the unique numerical identifer of the GO term
+2) GO_Term (mandatory)		- the name of the GO term
+3) GO_Aspect (mandatory)	- which ontology: P=Process, F=Function, C=Component
+4) GO_Term_Definition 		- the full definition of the GO term
+	(optional)
+
+
+For more information on the Gene Ontology (GO) project, see: 
+
+  http://www.geneontology.org/
+
+go_terms.README last updated Sept 14, 2023

qhtcp-workflow/docs/Updating files/_Updating_Notes_23_0329.txt

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+Updating files; see 'Updating Q-HTCP_SourceFiles'
+
+some of the updated files that were downloaded from the places sited have different extensions and these were changed to match the older file names (e.g., .tab instead of .tsv).
+
+I changed the ORF list files in the 'code' folder of StudiesQHTCP to match those in the REMc folder. The file names were slightly different. I updated the AllOrfs, KO_NoDamps, and DampsOnly files to be consistent with the SGD systematic names in the final genome edition. I think that 'ORFs_w_DAmP_list' has the same name as before. The other two were added, so there shouldn't be a conflict, but we may want to use those other files in some cases where they are needed but not being used.
+