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QHTCP debugging

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Bryan Roessler
2024-08-04 22:50:01 -04:00
parent 68dea8ecb4
commit a44f7f143f
1 changed files with 19 additions and 20 deletions
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workflow/qhtcp-workflow
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@@ -1307,24 +1307,24 @@ qhtcp() {
# Replacing ExpFrontend.m # Replacing ExpFrontend.m
choose_easy_results_dir # choose_easy_results_dir
# Create studies archive file if missing # # Create studies archive file if missing
if ! [[ -d $STUDIES_ARCHIVE_FILE ]]; then # if ! [[ -d $STUDIES_ARCHIVE_FILE ]]; then
header=(StudyDate tStudyName StudyPath ExpNum ExpDate ExpPath ResultFile) # header=(StudyDate tStudyName StudyPath ExpNum ExpDate ExpPath ResultFile)
printf "%s\t" "${header[@]}" > "$STUDIES_ARCHIVE_FILE" # printf "%s\t" "${header[@]}" > "$STUDIES_ARCHIVE_FILE"
fi # fi
# TODO Add them all to StudiesDataArchive? # # TODO Add them all to StudiesDataArchive?
# Probably better to always add and remove dupes later since each invocation "counts"? # # Probably better to always add and remove dupes later since each invocation "counts"?
for f in "${EASY_RESULTS_FILES[@]}"; do # for f in "${EASY_RESULTS_FILES[@]}"; do
for s in "${STUDIES_NUMS[@]}"; do # for s in "${STUDIES_NUMS[@]}"; do
# Trying to match old ExpFrontend formatting # # Trying to match old ExpFrontend formatting
printf "%s\t" \ # printf "%s\t" \
"${DATE//_/}" "$PROJECT_NAME" "$QHTCP_PROJECT_DIR" "Exp$s" \ # "${DATE//_/}" "$PROJECT_NAME" "$QHTCP_PROJECT_DIR" "Exp$s" \
"$PROJECT_DATE" "$PROJECT_SCANS_DIR" "$EASY_RESULTS_DIR" "${f##*/}" \ # "$PROJECT_DATE" "$PROJECT_SCANS_DIR" "$EASY_RESULTS_DIR" "${f##*/}" \
>> "$STUDIES_ARCHIVE_FILE" # >> "$STUDIES_ARCHIVE_FILE"
done # done
done # done
# Run R interactions script on all studies # Run R interactions script on all studies
for s in "${STUDIES_NUMS[@]}"; do for s in "${STUDIES_NUMS[@]}"; do
@@ -1998,13 +1998,12 @@ get_studies() {
if ! ((YES)); then if ! ((YES)); then
for ((i=1; i<2; i++)); do for ((i=1; i<2; i++)); do
cat <<-EOF cat <<-EOF
"Next entry suggestion: $next_study_entry" Next entry suggestion: "$next_study_entry"
"Would you like to: Would you like to:
* (a)dd the suggested entry * (a)dd the suggested entry
* (e)dit the StudyInfo.csv file manually in nano * (e)dit the StudyInfo.csv file manually in nano
* (c)ontinue?" * (c)ontinue?"
EOF EOF
read -r -p "(c): " response read -r -p "(c): " response
echo "" echo ""