strcat to sprintf

workflow/templates/easy/par4Gbl_Main8c.m

@@ -7,6 +7,7 @@ global scansDir
 global matFile
 global fhconsole
 global easyResultsDir
+global printResultsDir
 global pointMapsResultsDir
 global fotosResultsDir
 global matDir
@@ -17,6 +18,7 @@ global numCols
 global scan
 global scanMax
 global tptLength
+global easyDir
 
 numRows=24; % for Single Vertical 
 numCols=16; % for Single Vertical 
@@ -34,10 +36,10 @@ Fflg=1;
 % fclose('all');  % close all open files
 
 % Unset some vars just in case they are already set
-clear('scanIntens','Scanfiles','pathname','tifFileLstP4')
+clear('scanIntens','Scanfiles','pathname','tifFileLstP4');
 
 try
-  clf(fhconsole,'reset')
+  clf(fhconsole,'reset');
 catch
 end
 
@@ -46,42 +48,32 @@ end
 % EASYconsole
 
 if exist(matFile, 'file')
-  bkUpMatFile=fullfile(matDir,'BkUp',matFile)
-  copyfile(matFile,(fullfile(matDir,'BkUp',matFile)))
+  bkUpMatFile=fullfile(matDir,'BkUp',matFile);
+  copyfile(matFile,bkUpMatFile);
 end
 
+% Reloacated from 'PTmats' to prevent potential overwrite when PTmats is
+% copied into new job when the PT template is about the same.  We also
+% now have a default template if one is not made. i.e., when the images
+% from the new experiment are too sketchy to make a good pintool
+% template. By moving it to 'Fotos' we avoid possible issues due to
+% copying the Nbdg.mat file along with the default template '.mat' files.
+% A copy of Ndbg.mat is placed also saved to the 'PTmats' directory
+% after each run to allow previous version of EASY to access data made
+% by EASY versions after 20_0819.
 try
-  load(fullfile(easyResultsDir,'Fotos','Nbdg')) %Modified to load from 'Fotos' 20_0819
+  load(fullfile(fotosResultsDir,'Nbdg')); %Modified to load from 'Fotos' 20_0819
 catch
-  % Reloacated from 'PTmats' to prevent potential overwrite when PTmats is
-  % copied into new job when the PT template is about the same.  We also
-  % now have a default template if one is not made. i.e., when the images
-  % from the new experiment are too sketchy to make a good pintool
-  % template. By moving it to 'Fotos' we avoid possible issues due to
-  % copying the Nbdg.mat file along with the default template '.mat' files.
-  % A copy of Ndbg.mat is placed also saved to the 'PTmats' directory
-  % after each run to allow previous version of EASY to access data made
-  % by EASY versions after 20_0819.
-  load(fullfile(easyResultsDir,'PTmats','Nbdg')) %Left in to accomodate loads of work before 20_0819
+  load(fullfile(pointMapsResultsDir,'Nbdg')); %Left in to accomodate loads of work before 20_0819
 end
 % Load Fotos stored data
-try
-  load(fullfile(easyResultsDir,'Fotos','Coordinates'))
-catch
-end
-try
-  load(fullfile(easyResultsDir,'Fotos','BGatTpts'))
-catch
-end
-try
-  load(fullfile(easyResultsDir,'Fotos','anlZones'))
-catch
-end
-% autoImCF
-try
-  load(fullfile(easyResultsDir,'PTmats','NCFparms'))    
-catch ME
-  load parameters   
+fotosToLoad = {'Coordinates', 'BGatTpts', 'anlZones', 'NCFparms'};
+for i = 1:length(fotosToLoad)
+  try
+    load(fullfile(fotosResultsDir, fotosToLoad{i}));
+  catch
+    load(fullfile(easyDir,'parameters'));
+  end
 end
 
 % Get Print Times
@@ -89,12 +81,12 @@ PrintTimes=[];
 scLst={};
 
 % Parameter Entry
-NImParamRadiusGui(scansDir) % Ncode 122111replaced removed  ,numOfPrtTimes)
+NImParamRadiusGui(scansDir); % Ncode 122111replaced removed  ,numOfPrtTimes)
 width=24;
 widthEx=width-1; % width extention from reference point
 dither=ImParMat(6);
 radius=ImParMat(10);
-NIcircle
+NIcircle;
 
 % Load Stuff
 lastPlateOnLastScan=1; % Ncode
@@ -118,7 +110,7 @@ else
 end
 
 SWgrowthArea=ImParMat(9);
-load(fullfile(pointMapsResultsDir,'NPTmapSearch'))
+load(fullfile(pointMapsResultsDir,'NPTmapSearch'));
 PTmapPos=detPos;
 selScanNumLst=[];
 Scanfiles=[];
@@ -157,10 +149,10 @@ selScanNumLst2=selScanNumLst; % function passthrough, passback to par4gbl_Main 2
 
 % Preallocation
 scCount=[];
-TmpexpScanIntens00=cell(1);  % cell(1,scanMax);
-TmpFexpScanSpots00=cell(1);  % cell(1,scanMax);
-TmpFexpScanBMtp00=cell(1);  % cell(1,scanMax);
-TmpanlZoneRefs00=cell(1);  % cell(1,scanMax);
+TmpexpScanIntens00=cell(1); % cell(1,scanMax);
+TmpFexpScanSpots00=cell(1); % cell(1,scanMax);
+TmpFexpScanBMtp00=cell(1); % cell(1,scanMax);
+TmpanlZoneRefs00=cell(1); % cell(1,scanMax);
 Tmpsbdg00=cell(1); 
 TmpexpScanIntens4=cell(1,numScans);
 TmpFexpScanSpots4=cell(1,numScans);
@@ -230,9 +222,9 @@ fileExt='.txt';
 filePrefix='FitResults_';
 for scanCnt=1:numScans
   selScan=p4L4{16,scanCnt}; % determine the actual scan in the scanCnt parfor distributed "id"
-  fileSuffix=strcat('Scan', num2str(selScan),'_Plate', num2str(1));
+  fileSuffix=sprintf('Scan%d_Plate%d', selScan, 1);
   fileNamePlate=[filePrefix fileSuffix fileExt];
-  fileName=fullfile(easyResultsDir,'PrintResults', fileNamePlate); % [outputDirectory fileNamePlate];
+  fileName=fullfile(printResultsDir, fileNamePlate); % [outputDirectory fileNamePlate];
 
   % This,fprint for loop,is an very old legacy feature which slows processing. Could be
   % removed but allows easy observation of how a run is progressing and can be
@@ -241,7 +233,7 @@ for scanCnt=1:numScans
 
   fid=fopen(fileName,'w');
   fprintf(fid, 'Num.\tAUC\tMSR\tK\tr\tl\tR-squared\tK-lower\tK-upper\tr-lower\tr-upper\tl-upper\tl-lower\tArea\tLastInten\tSpineMaxRateTimePt\tLastFitTimePt\n');
-  for n=1:384   % startCount:numCultures
+  for n=1:384 % startCount:numCultures
     fprintf(fid,'%d\t',n);
     fprintf(fid, '%.5f\t%.5f\t%.5f\t%.5f\t%.5f\t%.5f\t%.5f\t%.5f\t%.5f\t%.5f\t%.5f\t%.5f\t%.5f\t%.5f\t%.5f\t%.5f\n',...
     outCprint{14,scanCnt}(n,1),outCprint{14,scanCnt}(n,2),outCprint{14,scanCnt}(n,3),outCprint{14,scanCnt}(n,4),...