Pause EZview work for now

workflow/.old/apps/matlab/ExpFrontend.m

@@ -0,0 +1,212 @@
+% FrontEnd utility to copy source result sheet into Exp_ folders of
+% StudiesQHTCP/StudyName/Exp1(2,3,4). This allow the automation of path
+% capture to the StudiesDataArchieve.txt study log.
+% Select, copy and Capture Study Exp_ details to study log
+
+%Exp meta data collection 
+
+% Set path variables
+wCodeDir=pwd;
+Wstudy=fullfile('../', wCodeDir);
+studyDate=datetime('now');
+
+%Load results file meta data  into workspace
+try 
+    ExpLabel= strcat('Exp',wCodeDir(end))
+    questdlg('\fontsize{20} Select the !!Results File','File Selection','OK', struct('Default','OK','Interpreter','tex'));
+    [resFile,resPath]= uigetfile('*.txt')
+    copyfile((fullfile(resPath,resFile)),fullfile(wCodeDir))
+    resDate= char(regexp(resFile, '(\d\d\_\d\d\d\d)|( \d\d\_\d\d\d\d|\d\d\d\d\d\d)','match'))
+    cd ..
+
+    if ispc
+        lastSep=max(strfind(Wstudy,'\'))
+        studyName=Wstudy((lastSep+1):end)
+    else
+        lastSep=max(strfind(Wstudy,'/'))
+        studyName=Wstudy((lastSep+1):end)
+    end
+
+    % Build the study info array
+    S.sDate(1)= {studyDate};
+    S.sName(1)= {studyName}
+    S.sPath(1)= {Wstudy}
+    S.ELabel(1)= {ExpLabel}
+    S.EresDate(1)= {resDate}
+    S.EresFile(1)= {resFile}
+    S.EresPath(1)= {resPath}
+    
+    cd ..
+
+    fid = fopen('StudiesDataArchive.txt','a');  
+    fprintf(fid,'StudyDate\tStudyName\tStudyPath\tExpNum\tExpDate\tExpPath\tResultFile\n');
+    fprintf(fid, '%s\t %s\t %s\t %s\t %s\t %s\t %s \n',S.sDate{1},S.sName{1},S.sPath{1},S.ELabel{1},S.EresDate{1},S.EresPath{1},S.EresFile{1});
+    fclose(fid);
+    fclose('all');
+
+catch
+    cd(wCodeDir)
+    disp('Error: Unable to Execute ExpFrontend.m')
+end
+
+cd(wCodeDir)
+
+%*************************************************************************************
+%*************************************************************************************
+%#####################################################################################
+%Improved storage ammenable for database use
+%FrontEnd utility to copy source result sheet into Exp_ folders of
+%StudiesQHTCP/StudyName/Exp1(2,3,4). This allow the automation of path
+%capture to the StudiesDataArchieve.txt study log.
+%Select, copy and Capture Study Exp_ details to study log
+studyDateNow= studyDate  %preserve the 'Now' date 
+nowNumFNm= strcat((int2str(now)),'.mat') % from previous section incase the /StudyName doesn't have a standard date 
+%capture the /StudiesQHTCP directory for storing log data
+cd ../..
+logPath= pwd  %is /.../Exp_
+cd(wCodeDir)
+%Try to load an existing data set from previous Frontend calls
+try  %end ~ln121
+  load(fullfile(logPath,'.studyLog.mat')) %load(fullfile('../../','studyLog.mat'))
+catch  %If no studyLog.mat found [Initial First Entry]
+    ExpLabel= strcat('Exp',wCodeDir(end))
+    resDate= char(regexp(resFile, '(\d\d\_\d\d\d\d)|( \d\d\_\d\d\d\d|\d\d\d\d\d\d)','match'))
+    cd .. %move up to current study folder from ../Exp_ folder; 
+    %Study meta data collection
+    Wstudy= pwd %Capture the specific current Study directory
+    try %try to extract study date from folder name
+     studyDate= char(regexp(Wstudy, '(\d\d\_\d\d\d\d)|( \d\d\_\d\d\d\d|\d\d\d\d\d\d)| \d\d\d\d\d\d)','match'))
+     S.sDate(1)= {studyDate};
+    catch %if unsuccessful, accept the current date and convert to a 6 char string
+     studyDate= yyyymmdd(studyDateNow);
+     studyDate= (int2str(studyDate))
+     studyDate= studyDate(3:8)
+    end
+   %Capture StudyName
+   if ispc
+    lastSep=max(strfind(Wstudy,'\'))
+    studyName= Wstudy((lastSep+1):end)
+   else
+    lastSep=max(strfind(Wstudy,'/'))
+    studyName= Wstudy((lastSep+1):end)
+    
+   end
+  %Put current First data entry into Structure of Save to StudyLog.mat file
+   S.sDate(1)= {studyDate};
+   S.sName(1)= {studyName}
+   S.sPath(1)= {Wstudy}
+   S.ELabel(1)= {ExpLabel}
+   S.EresDate(1)= {resDate}
+   S.EresFile(1)= {resFile}
+   S.EresPath(1)= {resPath}
+   
+ cd(wCodeDir)
+
+logFiletxt= fullfile(logPath,'StudiesDataArchive4DB.txt') %relative .txt path 
+%Initialize the StudiesDataArchive.txt file with the First row of meta data
+
+%Print to a .txt spreadsheet the first set of data in the logFiletxt file
+fid = fopen(logFiletxt,'w');
+fprintf(fid,'StudyDate\tStudyName\tStudyPath\tExpNum\tExpDate\tExpPath\tResultFile\n');
+fprintf(fid, '%s\t %s\t %s\t %s\t %s\t %s\t %s \n',studyDate,studyName,Wstudy,ExpLabel,resDate,resPath,resFile);
+fclose(fid);
+%Save the first entry meta data into a permanent .mat files for future recall
+save(fullfile(logPath,'studyLog4DB.mat'), 'S')
+save(fullfile(logPath,'.studyLog.mat'), 'S')
+save(fullfile(logPath,'.nowNumFNm.mat'), 'S')
+
+
+
+end  %end for try  for the First entry only
+%++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+%++++++++END of FIRST ENTRY startup section++++++++++++++++++++++++++++++++
+%++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
+
+
+
+%Begin routine for all Entries After the Initial data entry**************** 
+ExpLabel= strcat('Exp',wCodeDir(end))
+resDate= char(regexp(resFile, '(\d\d\_\d\d\d\d)|( \d\d\_\d\d\d\d|\d\d\d\d\d\d)','match')) %Capture date from !!Results file
+
+cd .. %Move to the current study folder
+
+%Capture study meta dat
+Wstudy= pwd % Capture the path to the current study
+
+  %Attempt to extract study date from folder name and convert to a
+  %searchable numeric date
+   studyDate= char(regexp(Wstudy, '(\d\d\_\d\d\d\d)|( \d\d\_\d\d\d\d|\d\d\d\d\d\d)| \d\d\d\d\d\d)','match'))
+      if ~isempty(studyDate)  %If no date in folder name use current date and convert to 6char string
+       S.sDate(1)= {studyDate};
+       if isequal((str2num(studyDate(3))),'_') %Remove '_' so that date is a number for easy DB search
+           studyDate= strcat(studyDate(1:2),studyDate(4:6))
+       end
+      else
+       studyDate= yyyymmdd(studyDateNow);
+       studyDate= (int2str(studyDate)) 
+       studyDate= studyDate(3:8) 
+     end
+    
+if ispc
+    lastSep=max(strfind(Wstudy,'\'))
+    studyName= Wstudy((lastSep+1):end)
+else
+    lastSep=max(strfind(Wstudy,'/'))
+    studyName= Wstudy((lastSep+1):end)
+end
+
+%Put meta data into a structure for storage (studyLog.mat) and future
+%compare operations
+lastRow= length(S.sPath)
+
+%Compare these just obtained paths with those stored in the studyLog.mat
+%file and add a new row if the study or results sheet meta data is new or different
+cd ..  %Move the the /QHTPCstudies folder
+logtxt= 'StudiesDataArchive4DB.txt'
+logFiletxt= fullfile(logPath,logtxt) %
+try
+  matched=0;
+ for n= 1:(lastRow)
+    if strcmp(Wstudy,S.sPath(n)) && strcmp(resPath, S.EresPath(n)) && strcmp(ExpLabel, S.ELabel(n))
+        matched= 1;
+        break
+    end
+ end
+      
+    
+%Update the StudiesDataArchive.txt file with a new row of meta data
+if matched== 0 %if no match for this entry then add a line to the text archive file
+     fid = fopen(logFiletxt,'w');  
+      S.sDate(lastRow+1)= {studyDate};
+      S.sName(lastRow+1)= {studyName};
+      S.sPath(lastRow+1)= {Wstudy};
+      S.ELabel(lastRow+1)= {ExpLabel};
+      S.EresDate(lastRow+1)= {resDate};
+      S.EresFile(lastRow+1)= {resFile};
+      S.EresPath(lastRow+1)= {resPath};
+  for n= 1:(lastRow +1)
+   %Print to a .txt spreadsheet and Save update to .mat files
+    if n==1
+     fprintf(fid,'StudyDate\tStudyName\tStudyPath\tExpNum\tExpDate\tExpPath\tResultFile\n');
+    end
+    fprintf(fid, '%s\t %s\t %s\t %s\t %s\t %s\t %s \n',S.sDate{n},S.sName{n},S.sPath{n},S.ELabel{n},S.EresDate{n},S.EresPath{n},S.EresFile{n});
+  end
+
+  fclose(fid); %close DBase amenable study log file after data update
+ 
+ save((fullfile(logPath,'studyLog4DB.mat')), 'S') % path for  studyLog.mat
+ save((fullfile(logPath,'.studyLog.mat')), 'S')  %path backup studyLogBU.mat
+ save((fullfile(logPath,strcat('.',nowNumFNm))), 'S') 
+end 
+fclose('all');
+
+catch
+    cd(wCodeDir) %Return to the location of the frontend.m code (/studyName/Exp_)
+    fclose('all');
+    clear S %clear data structure variable 'S.'
+end
+
+cd(wCodeDir) %Return to the location of the frontend.m code (/studyName/Exp_)
+clear all %clear workspace variables
+
+

workflow/apps/matlab/ezview/EZexpSel.m

@@ -2,7 +2,7 @@
 global Expaa
 global Expbb
 global expType
-global usrExpJobsDir
+global scansDir
 global zonePB
 
 w=pwd;
@@ -90,7 +90,7 @@ if expType==1
   
   % Return without execution if user cancels or doesn't select a .mat file
   try 
-    if openExpfile==0 || scansDir==0
+    if matFile==0 || scansDir==0
       return
     end
   catch
@@ -100,14 +100,11 @@ if expType==1
     orfLstSel=get(handles.GeneOrfTog,'value')
   end
 
-
   Exp(expN).Dexp(1).srtGnLst={('CheckMP/MPDMfile')};
   Exp(expN).Dexp(1).srtOrfLst={('CheckMP/MPDMfile')};
   set(handles.listboxGnOrf,'value',1)  %Fix accomodation for bug in App Designer .. .wlapp converter 230906
   set(handles.listboxGnOrf,'string',cellstr([{'Failed To Load'}; {' '}]));
-
+  load(matFile);
-  ExpOutmat=fullfile(scansDir,openExpfile);
-  load(ExpOutmat);
   cd(scansDir)
   cd ..;
   resDir=pwd;
@@ -137,7 +134,6 @@ if expType==1
   load(fullfile(resDir,'Fotos','BGatTpts'))
   load(fullfile(resDir,'PTmats','NImParameters'))
   %Backup for cond. sothat failure to load is recovered back prev. ExpJob data 
-  %test in temp 
 
   Exp(expN).Dexp(1).temp.DM=DM;
   Exp(expN).Dexp(1).temp.MP=MP;

workflow/apps/matlab/ezview/EZinterAgingDev0.m

@@ -1,12 +1,13 @@
 %single gene L based interaction shift display
 function EZinterAgingDev0
   global Exp
+  global matFile
 
-  [openExpfile,scansDir]=uigetfile('.mat','Open Experiment folder and data storage .mat file name','MultiSelect','on'); 
+  [matFile,scansDir]=uigetfile('.mat','Open Experiment folder and data storage .mat file name','MultiSelect','on'); 
   AgMPDM=load(fullfile(scansDir,'MasterPlateFiles','MPDMmat.mat'));
 
-  for i=1:size(openExpfile,2)
+  for i=1:size(matFile,2)
-    ExpOutmat{i}=fullfile(scansDir,openExpfile{i});
+    ExpOutmat{i}=fullfile(scansDir,matFile{i});
     EScan{i}=load(ExpOutmat{1});
   end
 

workflow/apps/matlab/ezview/EZmultiDayGui.m

@@ -5,7 +5,7 @@ function EZmultiDayGui
   global exDlst
   global exFolder
   global expType
-  global usrExpJobsDir
+  global scansDir
 
   xPos=0.05;
   btnWid=0.10;

workflow/apps/matlab/ezview/EZmultiExLoad.m

@@ -28,7 +28,7 @@ for n=1:Exp(expN).DexpLength % size(matFile,2)
   set(handles.listboxGnOrf,'value',1)  %Fix accomodation for bug in App Designer .. .wlapp converter 230918
   set(handles.listboxGnOrf,'string',cellstr([{'Failed To Load'}; {' '}]));
   % try
-  ExpOutmat=matFile(n)   %fullfile(scansDir,openExpfile);
+  ExpOutmat=matFile(n)
   load(char(ExpOutmat));
   %cd(scansDir)
   %cd ..;

workflow/apps/matlab/ezview/EZvInitLoad.m

@@ -3,7 +3,8 @@ global Exp
 global Expaa
 global Expbb
 global userPars
-global usrExpJobsDir
+global scansDir
+global matFile
 global zonePB
 global mpdmFile
 global ghandles
@@ -147,7 +148,7 @@ try
   % directory in the uigetfile to load the experiment .mat file.
 
   try 
-    [openExpfile,scansDir]=uigetfile('.mat','Open Experiment folder and data storage .mat file name','MultiSelect','off')
+    [matFile,scansDir]=uigetfile('.mat','Open Experiment folder and data storage .mat file name','MultiSelect','off')
     load (fullfile(Exp(1).Dexp(1).ExpFoldr,'MasterPlateFiles','MPDMmat.mat'))
     for i=1:numExps
       Exp(i).Dexp(1).DM=DM;
@@ -804,13 +805,9 @@ catch ME  %Outer loop try around entire code subroutine
   Exp(1).Dexp(1).srtOrfLst=cellstr([{'Failed To Load'}; {' '}]);
   Exp(2).Dexp(1).srtOrfLst=cellstr([{'Failed To Load'}; {' '}]);
   Exp(3).Dexp(1).srtOrfLst=cellstr([{'Failed To Load'}; {' '}]);
-  %[openExpfile,scansDir]
+
-  if ~contains(openExpfile,'.mat')          
+  if ~contains(matFile,'.mat')
-    cd(scansDir)
+    ExpOutImFile=fullfile(matFile);
-    cd '..'
-    ExpPath=pwd;
-    cd(w)
-    ExpOutImFile=fullfile(scansDir,openExpfile);
     EZvImagesOnly
   end
 end

workflow/apps/matlab/ezview/EZviewGui.m

@@ -1892,14 +1892,13 @@ function HMapRange_Callback(hObject, eventdata, handles)
   % flip=upper(answer(2));
 end
 
-function SetExpJobsFolder_Callback(hObject, eventdata, handles)
+function setScansDir_Callback(hObject, eventdata, handles)
 % hObject    handle to SetExpJobsFolder (see GCBO)
 % eventdata  reserved - to be defined in a future version of MATLAB
 % handles    structure with handles and user data (see GUIDATA
-  if ~exist('usrExpJobsDir','var')
+  % if ~exist('scansDir','var')
-    selpath=uigetdir('default','Set /ExpJobs Folder')
+  scansDir=uigetdir('default','Set Project Scans Folder')
-    usrExpJobsDir=selpath;
+  % end
-  end
 end
 
 % Executes on button press in zonePB1.