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d52903f8fa
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Before old plotting removal
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2024-09-04 02:03:23 -04:00 |
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111909914c
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Before calculate_interaction_scores() refactor
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2024-09-02 16:59:53 -04:00 |
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4311354325
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Fix l_outside to match l_within df logic
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2024-09-02 16:05:42 -04:00 |
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40395d26e7
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Use a single df for process_strains()
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2024-09-02 15:36:45 -04:00 |
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756075a7e5
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Remove existing columns before join
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2024-09-02 01:53:04 -04:00 |
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66062438b5
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Remove deprecated code and re-enable QC plots
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2024-09-01 22:54:54 -04:00 |
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65b273ffa1
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Set SM to 0 by default
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2024-09-01 22:53:33 -04:00 |
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d91a38004a
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Refactor out individual stats dataframes
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2024-09-01 22:38:59 -04:00 |
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e915e77504
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Refactor out calculate_bg_means
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2024-09-01 21:50:35 -04:00 |
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6fe47421df
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Fix placement of l_witin_2sd_k
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2024-09-01 19:58:40 -04:00 |
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fd03fbb205
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Add missing grouping var Gene
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2024-09-01 19:04:05 -04:00 |
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9627bcc69b
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Add missing grouping var Gene
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2024-09-01 19:03:39 -04:00 |
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3fbde2de24
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Fix stats_bg dataframe grouping
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2024-09-01 18:58:01 -04:00 |
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79175e7821
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Fix output dir usage
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2024-09-01 18:50:47 -04:00 |
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f1cc7b8404
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Left join summary stats df with input df
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2024-09-01 18:45:40 -04:00 |
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f4c9985e40
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Fix dataframe mutation order
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2024-09-01 17:54:08 -04:00 |
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e1f57ff7d7
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Add more informative output
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2024-09-01 17:33:40 -04:00 |
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c6c4870d46
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Skip empty QC plots
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2024-09-01 17:04:49 -04:00 |
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6b1428a384
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Add more output to main() to aid debug
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2024-09-01 16:44:57 -04:00 |
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403a7490eb
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Move plotting further down main() to work on df
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2024-09-01 16:31:04 -04:00 |
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ddb7a98e50
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Add helpful output to save_plots()
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2024-09-01 16:19:34 -04:00 |
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d61c7219d7
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Add horizontal legend support to plotly
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2024-09-01 16:16:07 -04:00 |
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1fa8fc1552
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Use as.factor(conc_num) for plots
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2024-09-01 15:40:29 -04:00 |
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a4de405b75
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Use as.factor(scan) for box plots
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2024-09-01 15:12:56 -04:00 |
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73a890cd36
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Make y conditional in generate_plot()
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2024-09-01 04:41:27 -04:00 |
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48311fda3b
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Add y var to stat_summary()
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2024-09-01 04:37:02 -04:00 |
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1bd3f9c4b4
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Add exception for delta_bg plot
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2024-09-01 04:35:02 -04:00 |
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77327c3986
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Add exception for delta_bg plot
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2024-09-01 04:13:14 -04:00 |
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62e7cf2b60
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Fix theme_grey() in theme_publication
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2024-09-01 03:37:02 -04:00 |
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9e2a2d16c5
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Replace sgd_genes function with vectorized approach
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2024-09-01 03:34:22 -04:00 |
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00984b5060
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Fix update_gene_names
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2024-09-01 03:28:28 -04:00 |
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a484a2b104
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Rollup for calculation_interaction_zscores refactor
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2024-09-01 03:18:42 -04:00 |
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05cd1a85d8
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Auto-commit: apps/r/calculate_interaction_zscores5.R
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2024-09-01 03:03:53 -04:00 |
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ed1e3cf756
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Auto-commit: apps/r/calculate_interaction_zscores5.R
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2024-09-01 02:31:49 -04:00 |
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9c48b25b42
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Auto-commit: apps/r/calculate_interaction_zscores5.R
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2024-09-01 02:05:15 -04:00 |
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814cec8ca2
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Auto-commit: apps/r/calculate_interaction_zscores5.R
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2024-08-31 16:40:01 -04:00 |
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8973a3f0a7
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Auto-commit: apps/r/calculate_interaction_zscores5.R
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2024-08-31 15:15:35 -04:00 |
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b139956df5
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Auto-commit: apps/r/calculate_interaction_zscores5.R
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2024-08-31 14:59:38 -04:00 |
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7b0b2c9bbd
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Auto-commit: apps/r/calculate_interaction_zscores5.R
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2024-08-31 12:32:05 -04:00 |
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d460f1e51d
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Auto-commit: apps/r/calculate_interaction_zscores5.R
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2024-08-31 03:45:12 -04:00 |
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d0d0836abd
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Initial (haha) interactions.R refactor
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2024-08-30 23:11:19 -04:00 |
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17521b817f
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Output interaction df in calculate_interaction_zscores.R
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2024-08-24 02:30:39 -04:00 |
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3cb6e89360
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Refine df filtering in calculate_interaction_zscores.R
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2024-08-24 00:12:56 -04:00 |
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dc5dea8bfc
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Add more output to calculate_interaction_zscores.R
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2024-08-23 22:43:41 -04:00 |
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b25dfb70b4
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Rollup before java debug
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2024-08-23 14:39:16 -04:00 |
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1502f6bf38
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Implement calculate_interaction_zscores.R
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2024-08-23 04:01:13 -04:00 |
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bcc8dba3e4
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Add new configuration file
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2024-08-22 04:20:40 -04:00 |
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a300484ceb
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interactions.R refactor
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2024-08-19 03:15:29 -04:00 |
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46f1e4d4d4
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Rollup before configuration integration
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2024-08-17 15:24:04 -04:00 |
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d1380f9c3b
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Rollup for java clustering
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2024-08-16 17:07:57 -04:00 |
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