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Mono Color

• 039c6c1388 Restore default aes colors Bryan Roessler 2024-09-30 01:48:50 -04:00
• 2f42357aa1 Simplify plot config format Bryan Roessler 2024-09-30 01:26:36 -04:00
• 5d25b3c3ef Add jittering to interaction plots Bryan Roessler 2024-09-29 18:36:55 -04:00
• c18f70a08a Refactor interaction plots to handle both reference and deletion scoring Bryan Roessler 2024-09-29 17:39:17 -04:00
• f005155d08 Improve interactions grids with gridExtra Bryan Roessler 2024-09-29 02:15:06 -04:00
• 376a299066 Use sd bars, not se, in plate analysis plots Bryan Roessler 2024-09-26 03:35:16 -04:00
• 51aa2589be Use precomputed se values with Bessel's correction Bryan Roessler 2024-09-26 02:52:09 -04:00
• fe9dfd9e38 Plot tweaks for before QC Bryan Roessler 2024-09-26 01:34:18 -04:00
• 6256127279 Break out aes mappings Bryan Roessler 2024-09-25 22:45:39 -04:00
• a45b977b0d Add theme_publication() to generate_and_save_plots() Bryan Roessler 2024-09-25 19:38:50 -04:00
• 453c834566 Copy original theme eactly and apply to plots Bryan Roessler 2024-09-25 19:24:29 -04:00
• 0d9f68537d Copy over more theme elements Bryan Roessler 2024-09-25 18:59:37 -04:00
• 4cab528772 Sort experiments for analysis Bryan Roessler 2024-09-25 18:48:56 -04:00
• 302110bb9b Switch from theme_gray() to theme_foundation() Bryan Roessler 2024-09-25 18:28:44 -04:00
• a4d08ad1a2 Use if_all Bryan Roessler 2024-09-25 16:59:52 -04:00
• cbe363e8ad Filter non-finite data for plate analysis plots Bryan Roessler 2024-09-25 16:54:58 -04:00
• 1661f913d8 Standardize output filenames Bryan Roessler 2024-09-25 15:15:48 -04:00
• b35966cb88 Enable QC plots for comparison Bryan Roessler 2024-09-25 14:04:32 -04:00
• 964c1528c3 Remove references to ranked df Bryan Roessler 2024-09-25 02:48:06 -04:00
• c42e13d09f Simplify y-limits Bryan Roessler 2024-09-25 02:33:52 -04:00
• 57ff7698a3 Fix Z_lm calculations Bryan Roessler 2024-09-25 02:28:46 -04:00
• ad6e10e67d Remove superfluous filter function Bryan Roessler 2024-09-25 02:12:06 -04:00
• fbbe351cbb Move ranks into rank_plots function Bryan Roessler 2024-09-25 01:57:14 -04:00
• 0836dc70d2 Improve NA filtering Bryan Roessler 2024-09-25 01:08:32 -04:00
• 94c477ca28 Fix bg data references Bryan Roessler 2024-09-24 23:09:46 -04:00
• 81174db065 Put bg_stats into its own df to be reused Bryan Roessler 2024-09-24 22:26:05 -04:00
• 4741996694 Align df handling closer to original script Bryan Roessler 2024-09-24 22:17:09 -04:00
• eaf75f8892 Preserve conc cols for later Bryan Roessler 2024-09-24 20:40:09 -04:00
• 89b32de29c Fix column naming derps Bryan Roessler 2024-09-24 20:14:20 -04:00
• fea56ac7a9 Revert to original column naming for Sum_Z_score Bryan Roessler 2024-09-24 20:10:09 -04:00
• 3c90c22a43 Replace deprecated cur_data() with pick() Bryan Roessler 2024-09-24 20:03:36 -04:00
• c7ad7246ee Redo interaction score groupings Bryan Roessler 2024-09-24 20:02:02 -04:00
• 5f1331f9a5 Workaround bogus sd and se calculations Bryan Roessler 2024-09-18 22:14:53 -04:00
• 62e07f53fd More interaction df changes Bryan Roessler 2024-09-18 20:08:24 -04:00
• 1b7e5f6e5d Try simpler df joining Bryan Roessler 2024-09-18 17:49:01 -04:00
• d64d6d18cc Add correct lm smoothing colors Bryan Roessler 2024-09-18 16:35:18 -04:00
• 909e168e2d Skip Overlap coloring for unadjusted df Bryan Roessler 2024-09-18 16:01:42 -04:00
• b4875430f8 Fix rank column names Bryan Roessler 2024-09-18 15:42:09 -04:00
• 452d9e4162 Make rank a function in across() Bryan Roessler 2024-09-18 14:35:43 -04:00
• 9e8a7e9361 Remove memory limits Bryan Roessler 2024-09-18 14:29:37 -04:00
• 728449efb4 Cleanup plot inconsistincies Bryan Roessler 2024-09-18 14:26:41 -04:00
• b35551c3e2 Extend filter_data into process_data Bryan Roessler 2024-09-18 13:09:58 -04:00
• 977561b200 Simplify SD bands Bryan Roessler 2024-09-18 04:27:49 -04:00
• eb3ed1470c Use updated guide term Bryan Roessler 2024-09-18 03:40:00 -04:00
• 3251c8f879 Rework plotting code, add auto-grid layout Bryan Roessler 2024-09-18 03:34:16 -04:00
• 7bfe5c337e Switch from tooltip to text aes for more control Bryan Roessler 2024-09-18 02:29:11 -04:00
• d42dd71b97 Refactor interactive tooltips Bryan Roessler 2024-09-18 02:15:32 -04:00
• d6e057b618 Fix overlap conditions Bryan Roessler 2024-09-18 00:09:07 -04:00
• 0760013c85 Drop lm grouping Bryan Roessler 2024-09-17 23:54:32 -04:00
• 219dc15a45 Hardcode group vars to simplify Bryan Roessler 2024-09-17 23:30:32 -04:00
• fdcd97d7f1 Correctly group linear modeling Bryan Roessler 2024-09-17 23:25:58 -04:00
• 7d2473044e Improve output Bryan Roessler 2024-09-17 22:26:11 -04:00
• 4f9c2d3274 Fix column references Bryan Roessler 2024-09-17 21:54:31 -04:00
• 5d0d017a67 Cleanup output Bryan Roessler 2024-09-17 21:03:19 -04:00
• 24abf3c359 Improve df grouping Bryan Roessler 2024-09-17 20:11:39 -04:00
• 268d7decb5 Tidy up groupings Bryan Roessler 2024-09-17 18:54:44 -04:00
• eb1c04bbab Fix rank vars names Bryan Roessler 2024-09-17 16:56:12 -04:00
• 62cf10860a Break plate analysis out of main() Bryan Roessler 2024-09-17 16:15:35 -04:00
• 2ddba41950 Reformat rank plot configs Bryan Roessler 2024-09-17 15:06:27 -04:00
• 012c5e1d69 Add rectangles to avg zscore plot Bryan Roessler 2024-09-17 14:59:38 -04:00
• d565f7f95f Revert load_and_process_data Bryan Roessler 2024-09-17 14:41:29 -04:00
• f342e292c8 Refactor data loading and add more plotting elements Bryan Roessler 2024-09-17 14:35:39 -04:00
• a58c8db90d Simplify rank columns Bryan Roessler 2024-09-17 09:42:43 -04:00
• cdeaf6e6ba Tidy some code up and make more specific Bryan Roessler 2024-09-16 21:57:34 -04:00
• 3bc0b532b7 Fix plot config references Bryan Roessler 2024-09-16 21:18:59 -04:00
• 39331eacc2 Simplify and fix summary stats Bryan Roessler 2024-09-16 21:14:59 -04:00
• d5141d04c4 Refactor data filtering Bryan Roessler 2024-09-16 21:10:22 -04:00
• 9d23540157 Add cross-interaction linear model calculations Bryan Roessler 2024-09-16 20:43:37 -04:00
• 4fd3453bd6 Vectorized data filtering Bryan Roessler 2024-09-16 20:18:38 -04:00
• 200df19922 Refactor data filtering Bryan Roessler 2024-09-16 20:05:06 -04:00
• 15b6d3327c Don't coerce closure Bryan Roessler 2024-09-16 19:39:49 -04:00
• 36b5a3aa4e Hardcode variables for rank plots Bryan Roessler 2024-09-16 19:33:00 -04:00
• 9fe45ba73f Break apart rank plot code Bryan Roessler 2024-09-16 19:17:01 -04:00
• 91fc9ecfda Convert filter_data to dplyr Bryan Roessler 2024-09-16 17:32:22 -04:00
• 28c9fda051 Rename variables arugment Bryan Roessler 2024-09-16 15:48:12 -04:00
• 3f2d629371 Absorb finite filter Bryan Roessler 2024-09-16 15:33:25 -04:00
• 5c87ff8615 Restructure plot filtering Bryan Roessler 2024-09-16 15:21:41 -04:00
• 37743b1f5e Pull cur_column() from across() Bryan Roessler 2024-09-16 15:07:07 -04:00
• 4045b31543 Extend plot filtering Bryan Roessler 2024-09-16 15:04:15 -04:00
• b13f2df26b Refactor interaction plot configs Bryan Roessler 2024-09-16 14:19:52 -04:00
• e07baf7a37 Break out plot filtering Bryan Roessler 2024-09-16 13:55:00 -04:00
• 4f90330500 Simplify R Squared calculations Bryan Roessler 2024-09-16 12:27:24 -04:00
• 22236fef49 Separate adjustments from ranks Bryan Roessler 2024-09-16 12:21:40 -04:00
• 1dfb5d5084 Improve rank plot filtering and plot config generation Bryan Roessler 2024-09-15 21:58:19 -04:00
• 534c570335 Create rank plots by SD band Bryan Roessler 2024-09-15 21:07:50 -04:00
• e00df4be45 Refactor rank plots Bryan Roessler 2024-09-15 19:32:25 -04:00
• eb2e1ae7d6 Add some debug for rank plots Bryan Roessler 2024-09-15 18:37:42 -04:00
• f848a60871 Add interaction vars to ranks Bryan Roessler 2024-09-15 17:48:44 -04:00
• 549090b572 Correctly pass annotations as list of list Bryan Roessler 2024-09-15 17:37:19 -04:00
• 971fb80194 Remove existing df calls for single dplyr Bryan Roessler 2024-09-15 17:21:21 -04:00
• ba7f575be1 Begin main() refactor Bryan Roessler 2024-09-15 17:06:36 -04:00
• 5dfa2d1650 Explicitly filter data before plotting to silence ggplot Bryan Roessler 2024-09-15 14:32:48 -04:00
• 6c13182961 Simplify annotation code Bryan Roessler 2024-09-15 12:48:36 -04:00
• ee986fbd60 Use tooltips rather than text aes for interactive plotly Bryan Roessler 2024-09-15 12:28:52 -04:00
• 4f0c36fd66 Prevent interactive variable collision in generate_plot Bryan Roessler 2024-09-15 12:01:07 -04:00
• 767694b8ac Prevent interactive variable collision in generate_plot Bryan Roessler 2024-09-15 11:58:00 -04:00
• 8b0212d9b4 Prevent interactive variable collision Bryan Roessler 2024-09-15 11:53:10 -04:00
• 915885e2bf Refactor plot generation to support interactive plotly plots Bryan Roessler 2024-09-15 11:44:16 -04:00
• 4877c1413e Avoid get() in across_all Bryan Roessler 2024-09-15 11:05:55 -04:00
• 2531a739dd Add annotations Bryan Roessler 2024-09-15 10:59:27 -04:00