218 lines
9.9 KiB
Matlab
Executable File
218 lines
9.9 KiB
Matlab
Executable File
%EZlstBoxExtCmp.m
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%Called by EZviewGui.m NOT by EZvDatatip.m and EZlstBoxExt.m
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%Provides Trace data storage for use by EZfigTrendOL.m
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RFcmpGFlg=0;
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if isequal(tempLB(4:6),'cmp')
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RFnum=str2double(tempLB(3));
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elseif isequal(tempLB(3:6),'cmpG')
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RFcmpGFlg=1;
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elseif isequal(tempLB(3:6),'cmpP')
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RFcmpGFlg=1; %I beleive handling will be the same as RFcmpG
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end
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Exp(expN).cLmdEven=0; %Added for Cummulative Median and Mean 'C' plot
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RFDMflg=0;
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if zoneSel==1,DexpN=(get(ghandles.DN1,'value')); end
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if zoneSel==2,DexpN=(get(ghandles.DN2,'value')); end
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if zoneSel==3,DexpN=(get(ghandles.DN3,'value')); end
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try
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p1=cell2mat(strfind(selGnOrf,'('));
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p2=cell2mat(strfind(selGnOrf,')'));
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dmNum=str2num(selGnOrf{1}(p1+1:p2-1));
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inDM=str2num(selGnOrf{1}(p1+1:p2-1));
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if (~isempty(dmNum)&& isnumeric(dmNum)),RFDMflg=1; end
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catch
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end
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if RFDMflg, Exp(zoneSel).Dexp(DexpN).pertSel=dmNum; end %pertSel=pert;
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sgdInfoOnly=get(handles.InfoToggle,'value');
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if sgdInfoOnly==1
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EZviewInfoBox
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else % Runs to end of EZlstBoxExt.m within this else condition
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% Plot Selected Gene/Orf Spot
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%try
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if RFcmpGFlg==0
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K=Exp(expN).Dexp(DexpN).RFcmpK(RFnum).dm(inDM).med; Ks=num2str(K);
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r=Exp(expN).Dexp(DexpN).RFcmpr(RFnum).dm(inDM).med; rs=num2str(r);
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l=Exp(expN).Dexp(DexpN).RFcmpL(RFnum).dm(inDM).med; Ls=num2str(l);
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Kl=K - Exp(expN).Dexp(DexpN).RFcmpK(RFnum).dm(inDM).std;
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Ku=K + Exp(expN).Dexp(DexpN).RFcmpK(RFnum).dm(inDM).std;
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rl=r - Exp(expN).Dexp(DexpN).RFcmpr(RFnum).dm(inDM).std;
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ru=r + Exp(expN).Dexp(DexpN).RFcmpr(RFnum).dm(inDM).std;
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lfast=l - Exp(expN).Dexp(DexpN).RFcmpL(RFnum).dm(inDM).std;
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lslow=l + Exp(expN).Dexp(DexpN).RFcmpL(RFnum).dm(inDM).std;
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elseif RFcmpGFlg==1
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K=Exp(expN).Dexp(DexpN).RFcmpGK.dm(inDM).med; Ks=num2str(K);
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r=Exp(expN).Dexp(DexpN).RFcmpGr.dm(inDM).med; rs=num2str(r);
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l=Exp(expN).Dexp(DexpN).RFcmpGL.dm(inDM).med; Ls=num2str(l);
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Kl=K - Exp(expN).Dexp(DexpN).RFcmpGK.dm(inDM).std;
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Ku=K + Exp(expN).Dexp(DexpN).RFcmpGK.dm(inDM).std;
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rl=r - Exp(expN).Dexp(DexpN).RFcmpGr.dm(inDM).std;
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ru=r + Exp(expN).Dexp(DexpN).RFcmpGr.dm(inDM).std;
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lfast=l - Exp(expN).Dexp(DexpN).RFcmpGL.dm(inDM).std;
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lslow=l + Exp(expN).Dexp(DexpN).RFcmpGL.dm(inDM).std;
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end
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try Kstr=Ks(1:5); catch, Kstr=Ks(1:length(Ks)); end
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try rstr=rs(1:5); catch, rstr=rs(1:length(rs)); end
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try Lstr=Ls(1:5); catch, Lstr=Ls(1:length(Ls)); end
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t=1:200;
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clear g;
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%try
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g=K ./ (1 + exp(-r.* (t - l )));
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gSlow=Kl ./ (1 + exp(-rl.* (t - lslow )));
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gFast=Ku ./ (1 + exp(-ru.* (t - lfast )));
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if K==0||r==0||l==0, g(1:200)=1;gSlow(1:200)=1;gFast(1:200)=1;end
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%tser=(scan(1,plateNum).plate(1).t0Series(:));
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%rawData=scan(1,plateNum).plate(1).intens(indx,:)/scan(1,plateNum).plate(1).Ag(indx);
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if zoneSel==1
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plotAxes=ghandles.Paxes1; OLaxes=ghandles.OLaxes1;
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Dlaxes=ghandles.Dlaxes1;Dkaxes=ghandles.Dkaxes1;Draxes=ghandles.Draxes1;
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Exp(1).traceN=Exp(1).traceN+1;
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traceN=Exp(1).traceN;
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end
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if zoneSel==2
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plotAxes=ghandles.Paxes2; OLaxes=ghandles.OLaxes2;Daxes=ghandles.Daxes2;
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Dlaxes=ghandles.Dlaxes2;Dkaxes=ghandles.Dkaxes2;Draxes=ghandles.Draxes2;
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Exp(2).traceN=Exp(2).traceN+1;
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traceN=Exp(2).traceN;
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end
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if zoneSel==3
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plotAxes=ghandles.Paxes3; OLaxes=ghandles.OLaxes3;Daxes=ghandles.Daxes3;
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Dlaxes=ghandles.Dlaxes3;Dkaxes=ghandles.Dkaxes3;Draxes=ghandles.Draxes3;
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Exp(3).traceN=Exp(3).traceN+1;
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traceN=Exp(3).traceN;
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end
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plot(plotAxes,t,g);hold (plotAxes,'on'); % plot(plotAxes,tser,rawData,'g*');
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plot(plotAxes,t,gSlow,'y'); plot(plotAxes,t,gFast,'r');hold (plotAxes,'off');
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% Store L R and K valves for Composite [C] plots
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Exp(expN).ll(traceN)=l; Exp(expN).rr(traceN)=r; Exp(expN).kk(traceN)=K;
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if RFcmpGFlg==0
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Exp(expN).lstd(traceN)=Exp(expN).Dexp(DexpN).RFcmpL(RFnum).dm(inDM).std;
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Exp(expN).kstd(traceN)=Exp(expN).Dexp(DexpN).RFcmpK(RFnum).dm(inDM).std;
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Exp(expN).rstd(traceN)=Exp(expN).Dexp(DexpN).RFcmpr(RFnum).dm(inDM).std;
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for dm=1:length(Exp(expN).Dexp(DexpN).DM.drug)
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Exp(expN).Trace(traceN).Dexp(DexpN).DM(dm).UsrLvals={Exp(expN).Dexp(DexpN).RFcmpL(RFnum).dm(dm).Lvals};
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Exp(expN).Trace(traceN).Dexp(DexpN).DM(dm).UsrKvals={Exp(expN).Dexp(DexpN).RFcmpK(RFnum).dm(dm).Kvals};
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Exp(expN).Trace(traceN).Dexp(DexpN).DM(dm).Usrrvals={Exp(expN).Dexp(DexpN).RFcmpr(RFnum).dm(dm).rvals};
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end
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Exp(expN).Trace(traceN).dmSel=inDM;
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Exp(expN).Trace(traceN).DexpN=DexpN;
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Exp(expN).Trace(traceN).UsrGLB=selGnOrf;
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elseif RFcmpGFlg==1
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Exp(expN).lstd(traceN)=Exp(expN).Dexp(DexpN).RFcmpGL.dm(inDM).std;
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Exp(expN).kstd(traceN)=Exp(expN).Dexp(DexpN).RFcmpGK.dm(inDM).std;
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Exp(expN).rstd(traceN)=Exp(expN).Dexp(DexpN).RFcmpGr.dm(inDM).std;
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if strcmp(Exp(expN).DexpType,'chrono')
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for nn=1:length(Exp(expN).Dexp) %replaced dmSel with inDM for 'chrono' and RFcmpGFlg
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Exp(expN).Trace(traceN).Dexp(nn).DM(inDM).UsrLvals=Exp(expN).Dexp(nn).RFcmpGL.dm(inDM).Lvals;
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Exp(expN).Trace(traceN).Dexp(nn).DM(inDM).UsrKvals=Exp(expN).Dexp(nn).RFcmpGK.dm(inDM).Kvals;
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Exp(expN).Trace(traceN).Dexp(nn).DM(inDM).Usrrvals=Exp(expN).Dexp(nn).RFcmpGr.dm(inDM).rvals;
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end
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else
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for dm=1:length(Exp(expN).Dexp(DexpN).DM.drug)
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Exp(expN).Trace(traceN).Dexp(DexpN).DM(dm).UsrLvals=Exp(expN).Dexp(DexpN).RFcmpGL.dm(dm).Lvals;
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Exp(expN).Trace(traceN).Dexp(DexpN).DM(dm).UsrKvals=Exp(expN).Dexp(DexpN).RFcmpGK.dm(dm).Kvals;
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Exp(expN).Trace(traceN).Dexp(DexpN).DM(dm).Usrrvals=Exp(expN).Dexp(DexpN).RFcmpGr.dm(dm).rvals;
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end
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end
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Exp(expN).Trace(traceN).dmSel=inDM;
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Exp(expN).Trace(traceN).DexpN=DexpN;
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Exp(expN).Trace(traceN).UsrGLB=selGnOrf;
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end
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Exp(expN).lslow(traceN)=lslow; Exp(expN).lfast(traceN)=lfast;
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Exp(expN).lKl(traceN)=Kl; Exp(expN).Ku(traceN)=Ku;
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Exp(expN).lrl(traceN)=rl; Exp(expN).ru(traceN)=ru;
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try
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for i=1:length(Exp(zoneSel).hOL(:))
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set(Exp(zoneSel).hOL(i),'color',[0 0 1]);
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end
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catch
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end
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Exp(zoneSel).hOL(traceN)=plot(OLaxes,t,g);hold on;
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set(Exp(zoneSel).hOL(traceN),'color',[1 0 0])
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% Exp(zoneSel).hOLb(traceN)=plot(OLaxes,tser,rawData,'g*'); %No Raw Data, Ref Composite 17_1009
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% catch
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% catchissue='Ln68 EZlstBoxCmpExt'
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% end %trycatch
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% Get the DM agar description
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if expN==1,DMstr=char(get(handles.DM1,'string'));end
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if expN==2,DMstr=char(get(handles.DM2,'string'));end
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if expN==3,DMstr=char(get(handles.DM3,'string'));end
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if isequal(selGnOrf{1}(1:3),'RF1')|| isequal(selGnOrf{1}(1:3),'RF2')|| RFcmpGFlg==1
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gene={selGnOrf{1}(1:p2)};
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geneOrfstr=gene;
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grfgenestr=gene;
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else
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gene=MP(1,LBmp).genename{1,1}(indx); orf=MP(1,LBmp).orf{1,1}(indx);
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geneOrfstr=strcat(gene,'_',orf,'_','m',num2str(LBmp),'r',num2str(LBr),'c',num2str(LBc),'_',tPtStr);
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grfgenestr=strcat(gene,'_',orf,'_','m',num2str(LBmp),'r',num2str(LBr),'c',num2str(LBc));
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end
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%spec=MP(1,LBmp).specifics{1,1}(indx); %orfrep=MP(1,plateNum).orfRep{1,1}(indx);
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%tPtStr=strcat('T=', num2str(scan(1,plateNum).plate(1).t0Series(tPtSel)));
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graphStr=strcat(grfgenestr,'_','L=',Lstr,'_','r=',rstr,'_','K=',Kstr);
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spotDescrip=strcat(graphStr,'->',DMstr);
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xp=char(Exp(zoneSel).Dexp(DexpN).resDir);
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if ispc,
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slashPos=strfind(char(Exp(zoneSel).Dexp(DexpN).resDir),'\');
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else
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slashPos=strfind(char(Exp(zoneSel).Dexp(DexpN).resDir),'/');
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end
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startPos=slashPos(length(slashPos)-1) +1;
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endPos=slashPos(length(slashPos)) -1;
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expStr={xp(startPos:endPos)}
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Exp(zoneSel).hOLname(traceN)=spotDescrip; %graphStr; %ghandles.Exp(zoneSel).hOLname(traceN)=graphStr;
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Exp(zoneSel).hOLexpNm(traceN)=expStr; %ghandles.Exp(expN).hOLexpNm(traceN)=expStr;
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Exp(zoneSel).hOLresDir(traceN)={Exp(zoneSel).Dexp(DexpN).resDir};
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%Exp(zoneSel).hOLplateNum(traceN)=plateNum;
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%traceData=vertcat(get(Exp(OLay).hOL(traceN),'XData'),get(ghandles.Exp(OLay).hOL(traceN),'YData'));
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if zoneSel==1,set(ghandles.GeneOrfLoc1,'string',geneOrfstr);end % Displays the value.
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if zoneSel==2,set(ghandles.GeneOrfLoc2,'string',geneOrfstr);end
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if zoneSel==3,set(ghandles.GeneOrfLoc3,'string',geneOrfstr);end
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if zoneSel==1,set(ghandles.graphStrLoc1,'string',spotDescrip);end %graphStr);end % Displays the value.
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if zoneSel==2,set(ghandles.graphStrLoc2,'string',spotDescrip);end %graphStr);end
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if zoneSel==3,set(ghandles.graphStrLoc3,'string',spotDescrip);end %graphStr);end
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% Write Spot and Exp Info to OLay title areas
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if zoneSel==1, %&& get(ghandles.rotPB1,'value')~=1
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if length(char(Exp(zoneSel).hOLname(traceN)))>40,set(ghandles.OLay1,'FontSize',8);end
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set(ghandles.OLay1,'string', Exp(zoneSel).hOLname(traceN));
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if length(char(Exp(zoneSel).hOLexpNm(traceN)))>40,set(ghandles.OLexp1,'FontSize',8);end
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set(ghandles.OLexp1,'string',Exp(zoneSel).hOLexpNm(traceN));
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end
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if zoneSel==2 %&& get(ghandles.rotPB2,'value') ~=1
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if length(char(Exp(zoneSel).hOLname(traceN)))>40,set(ghandles.OLay2,'FontSize',8);end
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set(ghandles.OLay2,'string', Exp(zoneSel).hOLname(traceN));
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if length(char(Exp(zoneSel).hOLexpNm(traceN)))>40,set(ghandles.OLexp2,'FontSize',8);end
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set(ghandles.OLexp2,'string',Exp(zoneSel).hOLexpNm(traceN));
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end
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if zoneSel==3 %&& get(ghandles.rotPB3,'value') ~=1
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if length(char(Exp(zoneSel).hOLname(traceN)))>40,set(ghandles.OLay3,'FontSize',8);end
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set(ghandles.OLay3,'string', Exp(OLay).hOLname(traceN));
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if length(char(Exp(zoneSel).hOLexpNm(traceN)))>40,set(ghandles.OLexp3,'FontSize',8);end
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set(ghandles.OLexp3,'string',Exp(OLay).hOLexpNm(traceN));
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end
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end
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% GraphicDestinationPerturbationComparison**15_0821
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lstBoxCmpFlg=1;
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EZdatatip=0;
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if strcmp((Exp(expN).DexpType),'single') || strcmp((Exp(expN).DexpType),'multi')
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EZdestComp
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elseif strcmp((Exp(expN).DexpType),'chrono')
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EZmDayTrend
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end
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