Relocate project dir and relax linter

qhtcp-workflow/.lintr

@@ -4,6 +4,6 @@ linters: linters_with_defaults(
   commented_code_linter = NULL,
   trailing_whitespace_linter(allow_empty_lines = TRUE),
   indentation_linter = NULL,
-  line_length_linter = line_length_linter(140)
+  line_length_linter = line_length_linter(145)
   )
 encoding: "UTF-8"

qhtcp-workflow/apps/r/calculate_interaction_zscores.R

@@ -24,13 +24,13 @@ base_size <- 14
 parse_arguments <- function() {
   args <- if (interactive()) {
     c(
-      "/home/bryan/documents/develop/scripts/hartmanlab/workflow/out/20240116_jhartman2_DoxoHLD/20240116_jhartman2_DoxoHLD",
-      "/home/bryan/documents/develop/scripts/hartmanlab/workflow/apps/r/SGD_features.tab",
-      "/home/bryan/documents/develop/scripts/hartmanlab/workflow/out/20240116_jhartman2_DoxoHLD/easy/20240116_jhartman2_DoxoHLD/results_std.txt",
-      "/home/bryan/documents/develop/scripts/hartmanlab/workflow/out/20240116_jhartman2_DoxoHLD/20240822_jhartman2_DoxoHLD/exp1",
+      "/home/bryan/documents/develop/hartmanlab/qhtcp-workflow/out/20240116_jhartman2_DoxoHLD/20240116_jhartman2_DoxoHLD",
+      "/home/bryan/documents/develop/hartmanlab/qhtcp-workflow/apps/r/SGD_features.tab",
+      "/home/bryan/documents/develop/hartmanlab/qhtcp-workflow/out/20240116_jhartman2_DoxoHLD/easy/20240116_jhartman2_DoxoHLD/results_std.txt",
+      "/home/bryan/documents/develop/hartmanlab/qhtcp-workflow/out/20240116_jhartman2_DoxoHLD/20240822_jhartman2_DoxoHLD/exp1",
       "Experiment 1: Doxo versus HLD",
       3,
-      "/home/bryan/documents/develop/scripts/hartmanlab/workflow/out/20240116_jhartman2_DoxoHLD/20240822_jhartman2_DoxoHLD/exp2",
+      "/home/bryan/documents/develop/hartmanlab/workflow/out/20240116_jhartman2_DoxoHLD/20240822_jhartman2_DoxoHLD/exp2",
       "Experiment 2: HLD versus Doxo",
       3
     )