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DMPexcel2mat.m refactor

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Bryan Roessler
2024-07-27 01:26:58 -04:00
parent 25a2641548
commit 5dc6021582
1 changed files with 6 additions and 7 deletions
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13
workflow/templates/easy/DMPexcel2mat.m
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@@ -90,8 +90,8 @@ end
% The input files should be csv, not xlsx % The input files should be csv, not xlsx
% This whole file could be much better and more portable % This whole file could be much better and more portable
if ispc if ispc
[num, txt, raw] = xlsread(masterPlateFile); %,'Yor1HitsMPsetFinal'); [num, txt, raw]=xlsread(masterPlateFile); %,'Yor1HitsMPsetFinal');
fields= {txt(2,1:15)}; %or 1:17 for later but dont wish to exceed and cause error ? if used fields={txt(2,1:15)}; %or 1:17 for later but dont wish to exceed and cause error ? if used
else else
clear MPtbl clear MPtbl
opts=detectImportOptions(masterPlateFile); opts=detectImportOptions(masterPlateFile);
@@ -186,7 +186,7 @@ if ~exist(drugMediaFile, 'file') || isempty(drugMediaFile)
disp(strcat('Using matching DrugMedia file: ', drugMediaFile, ', skipping directory selection')); disp(strcat('Using matching DrugMedia file: ', drugMediaFile, ', skipping directory selection'));
else else
% Try to find the DrugMedia file automatically (newest created first) % Try to find the DrugMedia file automatically (newest created first)
files=dir(matDir) files=dir(matDir);
dmFiles={files(strncmp(files.name, 'DrugMedia_', 10)).name}; dmFiles={files(strncmp(files.name, 'DrugMedia_', 10)).name};
if isempty(dmFiles) if isempty(dmFiles)
throw (MException('MATLAB:dir', 'No DrugMedia_ files in directory')); throw (MException('MATLAB:dir', 'No DrugMedia_ files in directory'));
@@ -210,7 +210,7 @@ if ~exist(drugMediaFile, 'file') || isempty(drugMediaFile)
questdlg('Select DrugMedia directory','Directory Selection','OK',... questdlg('Select DrugMedia directory','Directory Selection','OK',...
struct('Default','OK','Interpreter','tex')) struct('Default','OK','Interpreter','tex'))
dirToScan=uigetdir(); dirToScan=uigetdir();
files=dir(dirToScan) files=dir(dirToScan);
dmFiles={files(strncmp(files.name, 'DrugMedia_', 10)).name}; dmFiles={files(strncmp(files.name, 'DrugMedia_', 10)).name};
if isempty(dmFiles) if isempty(dmFiles)
throw (MException('MATLAB:dir', 'No DrugMedia_ files in directory')); throw (MException('MATLAB:dir', 'No DrugMedia_ files in directory'));
@@ -220,11 +220,10 @@ if ~exist(drugMediaFile, 'file') || isempty(drugMediaFile)
sortedFiles=dmFiles{sortedIndices}; sortedFiles=dmFiles{sortedIndices};
drugMediaFile=sortedFiles{1}; drugMediaFile=sortedFiles{1};
catch ME catch ME
h = msgbox(ME.message, 'Error', 'error'); h=msgbox(ME.message, 'Error', 'error');
uiwait(h); uiwait(h);
disp('Rerunning directory selection') disp('Rerunning directory selection');
% I don't know what else we'll need to do here % I don't know what else we'll need to do here
end
end end
end end
end end