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Restructure R library loading

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Bryan Roessler
2024-08-02 19:08:45 -04:00
parent 1500eba574
commit 815c7615e7
1 changed files with 1 additions and 1 deletions
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workflow/qhtcp-workflow
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@@ -482,7 +482,7 @@ install_dependencies() {
# Install R packages # Install R packages
for d in "${depends_r[@]}"; do for d in "${depends_r[@]}"; do
debug "$RSCRIPT -e \"if (!require(\"$d\", quietly = TRUE)); install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")\"" debug "$RSCRIPT -e \"if (!require(\"$d\", quietly = TRUE)); install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")\""
"$RSCRIPT" -e "if (!require(\"$d\", quietly = TRUE)); install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")" "$RSCRIPT" -e "if (!require(\"$d\", quietly = TRUE)); {install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")}"
done done
# Install Bioc packages # Install Bioc packages