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Enable QC plots for comparison

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This commit is contained in:
Bryan Roessler
2024-09-25 14:04:32 -04:00
parent 964c1528c3
commit b35966cb88
1 changed files with 5 additions and 5 deletions
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10
qhtcp-workflow/apps/r/calculate_interaction_zscores.R
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@@ -1232,9 +1232,9 @@ main <- function() {
) )
# Generating quality control plots in parallel # Generating quality control plots in parallel
# furrr::future_map(plot_configs, function(config) { furrr::future_map(plot_configs, function(config) {
# generate_and_save_plots(config$out_dir, config$filename, config$plot_configs) generate_and_save_plots(config$out_dir, config$filename, config$plot_configs)
# }, .options = furrr_options(seed = TRUE)) }, .options = furrr_options(seed = TRUE))
# Process background strains # Process background strains
bg_strains <- c("YDL227C") bg_strains <- c("YDL227C")
@@ -1259,7 +1259,7 @@ main <- function() {
ss_bg <- calculate_summary_stats(df_bg, summary_vars, group_vars = c("OrfRep", "conc_num", "conc_num_factor")) ss_bg <- calculate_summary_stats(df_bg, summary_vars, group_vars = c("OrfRep", "conc_num", "conc_num_factor"))
summary_stats_bg <- ss_bg$summary_stats summary_stats_bg <- ss_bg$summary_stats
write.csv(summary_stats_bg, write.csv(summary_stats_bg,
file = file.path(out_dir, paste0("SummaryStats_BackgroundStrains_", strain, ".csv")), file = file.path(out_dir, paste0("summary_stats_background_strain_", strain, ".csv")),
row.names = FALSE) row.names = FALSE)
# Set the missing values to the highest theoretical value at each drug conc for L # Set the missing values to the highest theoretical value at each drug conc for L
@@ -1449,7 +1449,7 @@ main <- function() {
correlation_plot_configs <- generate_correlation_plot_configs(zscores_interactions_filtered) correlation_plot_configs <- generate_correlation_plot_configs(zscores_interactions_filtered)
generate_and_save_plots( generate_and_save_plots(
out_dir = out_dir, out_dir = out_dir,
filename = "Avg_Zscore_vs_lm_NA_rm", filename = "Correlation_CPPs",
plot_configs = correlation_plot_configs, plot_configs = correlation_plot_configs,
grid_layout = list(ncol = 2, nrow = 2)) grid_layout = list(ncol = 2, nrow = 2))
}) })