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Rollup for java clustering

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This commit is contained in:
Bryan Roessler
2024-08-16 17:07:57 -04:00
parent 38b3f66695
commit d1380f9c3b
6032 changed files with 23267 additions and 924 deletions
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28
workflow/apps/matlab/easy/DgenResults.m
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@@ -50,9 +50,6 @@ end
% localprojectScansDir=projectScansDir;
% end
% TODO this seems weird
drivePos=min(strfind(projectScansDir,'/'));
drive=projectScansDir(1:(drivePos-1));
% DBupload=fullfile(drive,'EZdbFiles','DBupLOADfiles');
resultsFilename=fullfile(printResultsDir, 'results_elr.txt');
@@ -106,7 +103,7 @@ for s=1:size(scan,2)
clear outCmat
outCmat=scan(s).plate(p).CFout;
%Print Time Point HEADER for each plate for newly added intensity data
% Print Time Point HEADER for each plate for newly added intensity data
if isequal(opt,'Res')||isequal(opt,'Both')
fprintf(fid, '\n');
ln=ln+1;
@@ -125,7 +122,7 @@ for s=1:size(scan,2)
fprintf(fid, '\triseTm\tK\tr\tl\tR-squared\tK-lower\tK-upper\tr-lower\tr-upper\tl-lower\tl-upper\tArea\tLastInten\tSplineMaxRateTm\tLastFitTm\t1stFitTm\tMedianBase\tFitBase\tMinTm\tThreshTm');
if size(outCmat,2)==27
fprintf(fid, '\ttc11Cut\ttc12Cut\ttc21Cut\ttc22Cut'); %'\tEarly1\tEarly2\tLate1\tLate2'); 17_0629 MinBaseIntens update for MedianBase label
fprintf(fid, '\ttc11Cut\ttc12Cut\ttc21Cut\ttc22Cut'); % '\tEarly1\tEarly2\tLate1\tLate2'); 17_0629 MinBaseIntens update for MedianBase label
end
fprintf(fid, '\tTotFitPts\tPostThreshFitPts\t1stBackgrd\tLstBackgrd\t1stMeanTotBackgrd\tLstMeanTotBackgrd');
end
@@ -152,9 +149,9 @@ for s=1:size(scan,2)
end
end
numBlkCol=(maxNumIntens - dataLength); %size(outTseries,1));
numBlkCol=(maxNumIntens - dataLength); % size(outTseries,1));
if isequal(opt,'Res')||isequal(opt,'Both')
for nn=1:numBlkCol %extend to col beyond longest rawDataSet
for nn=1:numBlkCol % extend to col beyond longest rawDataSet
fprintf(fid, '\t');
end
fprintf(fid,'\tOrfRep');
@@ -179,8 +176,8 @@ for s=1:size(scan,2)
if rSq<.97 && rSq>0, selcode=strcat(selcode,' rSqLo');end
if lval>(0.85*(max(outTseries))), selcode=strcat(selcode,' late');end
if isnan(outCmat(n,7))||isnan(outCmat(n,8))||isnan(outCmat(n,9))...
||isnan(outCmat(n,10))||isnan(outCmat(n,11))...
||isnan(outCmat(n,12)), selcode=strcat(selcode,' NaN');
|| isnan(outCmat(n,10))||isnan(outCmat(n,11))...
|| isnan(outCmat(n,12)), selcode=strcat(selcode,' NaN');
end
% RiseTime Calculation
@@ -318,7 +315,7 @@ for s=1:size(scan,2)
fprintf(fid,'%d\t',ln);
end
%DB Raw Intensities and Timepoints
% DB Raw Intensities and Timepoints
if isequal(opt,'DB')||isequal(opt,'Both')
fprintf(fid2, '\t%s\t%s',intensBlob,tmBlob );
% Masterplate sheet
@@ -339,11 +336,11 @@ for s=1:size(scan,2)
end
fprintf(fid2, '\n');
end
end %if ~isempty(outCmat)
end %c
end %r
end %p
end %s
end
end
end
end
end
if isequal(opt,'Res')||isequal(opt,'Both')
fclose(fid);
@@ -604,7 +601,6 @@ try
fprintf(fid,'%d\t',ln);
end
% Raw Intensities and Timepoints
if isequal(opt,'DB')||isequal(opt,'Both')
fprintf(fid2, '\t%s\t%s',intensBlob,tmBlob );