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Remove semi-colons in Rscript depends

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Bryan Roessler
2024-08-02 22:01:02 -04:00
parent a24df512d5
commit f11d21ba33
1 changed files with 2 additions and 2 deletions
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workflow/qhtcp-workflow
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@@ -554,8 +554,8 @@ install_dependencies() {
# Install R packages # Install R packages
for d in "${depends_r[@]}"; do for d in "${depends_r[@]}"; do
debug "$RSCRIPT -e \"if (!require(\"$d\", quietly = TRUE)); {install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")}\"" debug "$RSCRIPT -e \"if (!require(\"$d\", quietly = TRUE)) {install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")}\""
"$RSCRIPT" -e "if (!require(\"$d\", quietly = TRUE)); {install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")}" "$RSCRIPT" -e "if (!require(\"$d\", quietly = TRUE)) {install.packages(\"$d\", dep=TRUE, repos=\"https://cloud.r-project.org\")}"
done done
# Install Bioc packages # Install Bioc packages